data_7DBF
#
_model_server_result.job_id            w8xTsQE984yeY5OCpOWCrw 
_model_server_result.datetime_utc      '2024-11-15 05:51:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7dbf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":201}' 
#
_entry.id    7DBF 
#
_exptl.entry_id    7DBF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              65.409 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ZINC ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            7DBF 
_cell.length_a            119.117 
_cell.length_b            119.117 
_cell.length_c            39.453 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7DBF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        169 
_symmetry.space_group_name_Hall    'P 61' 
_symmetry.space_group_name_H-M     'P 61' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A ND1 HIS 56 A HIS 80 1_555 C ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? 
metalc ? metalc2 A SG CYS 86 A CYS 110 1_555 C ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? 
metalc ? metalc3 A SG CYS 89 A CYS 113 1_555 C ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? 
metalc ? metalc4 B ND1 HIS 56 D HIS 80 1_555 D ZN ZN . D ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? 
metalc ? metalc5 B SG CYS 86 D CYS 110 1_555 D ZN ZN . D ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? 
metalc ? metalc6 B SG CYS 89 D CYS 113 1_555 D ZN ZN . D ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? 
#
_chem_comp.formula           'Zn 2' 
_chem_comp.formula_weight    65.409 
_chem_comp.id                ZN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ZINC ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     7DBF 
_atom_sites.fract_transf_matrix[1][1]    0.008395 
_atom_sites.fract_transf_matrix[1][2]    0.004847 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009694 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.025347 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ZN A 1 201 2 ZN ZN . 
D 2 ZN D 1 201 1 ZN ZN . 
E 3 HOH A 1 301 32 HOH HOH . 
E 3 HOH A 2 302 53 HOH HOH . 
E 3 HOH A 3 303 3 HOH HOH . 
E 3 HOH A 4 304 54 HOH HOH . 
E 3 HOH A 5 305 34 HOH HOH . 
E 3 HOH A 6 306 56 HOH HOH . 
E 3 HOH A 7 307 129 HOH HOH . 
E 3 HOH A 8 308 29 HOH HOH . 
E 3 HOH A 9 309 36 HOH HOH . 
E 3 HOH A 10 310 84 HOH HOH . 
E 3 HOH A 11 311 44 HOH HOH . 
E 3 HOH A 12 312 103 HOH HOH . 
E 3 HOH A 13 313 55 HOH HOH . 
E 3 HOH A 14 314 122 HOH HOH . 
E 3 HOH A 15 315 15 HOH HOH . 
E 3 HOH A 16 316 12 HOH HOH . 
E 3 HOH A 17 317 35 HOH HOH . 
E 3 HOH A 18 318 146 HOH HOH . 
E 3 HOH A 19 319 39 HOH HOH . 
E 3 HOH A 20 320 97 HOH HOH . 
E 3 HOH A 21 321 98 HOH HOH . 
E 3 HOH A 22 322 125 HOH HOH . 
E 3 HOH A 23 323 37 HOH HOH . 
E 3 HOH A 24 324 107 HOH HOH . 
E 3 HOH A 25 325 87 HOH HOH . 
E 3 HOH A 26 326 18 HOH HOH . 
E 3 HOH A 27 327 80 HOH HOH . 
E 3 HOH A 28 328 6 HOH HOH . 
E 3 HOH A 29 329 110 HOH HOH . 
E 3 HOH A 30 330 11 HOH HOH . 
E 3 HOH A 31 331 101 HOH HOH . 
E 3 HOH A 32 332 70 HOH HOH . 
E 3 HOH A 33 333 78 HOH HOH . 
E 3 HOH A 34 334 152 HOH HOH . 
E 3 HOH A 35 335 21 HOH HOH . 
E 3 HOH A 36 336 126 HOH HOH . 
E 3 HOH A 37 337 17 HOH HOH . 
E 3 HOH A 38 338 24 HOH HOH . 
E 3 HOH A 39 339 74 HOH HOH . 
E 3 HOH A 40 340 16 HOH HOH . 
E 3 HOH A 41 341 155 HOH HOH . 
E 3 HOH A 42 342 109 HOH HOH . 
E 3 HOH A 43 343 59 HOH HOH . 
E 3 HOH A 44 344 145 HOH HOH . 
E 3 HOH A 45 345 81 HOH HOH . 
E 3 HOH A 46 346 150 HOH HOH . 
E 3 HOH A 47 347 46 HOH HOH . 
E 3 HOH A 48 348 51 HOH HOH . 
E 3 HOH A 49 349 72 HOH HOH . 
E 3 HOH A 50 350 142 HOH HOH . 
E 3 HOH A 51 351 143 HOH HOH . 
E 3 HOH A 52 352 7 HOH HOH . 
E 3 HOH A 53 353 50 HOH HOH . 
E 3 HOH A 54 354 47 HOH HOH . 
E 3 HOH A 55 355 49 HOH HOH . 
E 3 HOH A 56 356 134 HOH HOH . 
E 3 HOH A 57 357 132 HOH HOH . 
E 3 HOH A 58 358 124 HOH HOH . 
E 3 HOH A 59 359 137 HOH HOH . 
E 3 HOH A 60 360 136 HOH HOH . 
E 3 HOH A 61 361 92 HOH HOH . 
E 3 HOH A 62 362 99 HOH HOH . 
E 3 HOH A 63 363 106 HOH HOH . 
E 3 HOH A 64 364 58 HOH HOH . 
E 3 HOH A 65 365 121 HOH HOH . 
E 3 HOH A 66 366 83 HOH HOH . 
F 3 HOH D 1 301 40 HOH HOH . 
F 3 HOH D 2 302 141 HOH HOH . 
F 3 HOH D 3 303 27 HOH HOH . 
F 3 HOH D 4 304 157 HOH HOH . 
F 3 HOH D 5 305 93 HOH HOH . 
F 3 HOH D 6 306 115 HOH HOH . 
F 3 HOH D 7 307 43 HOH HOH . 
F 3 HOH D 8 308 139 HOH HOH . 
F 3 HOH D 9 309 73 HOH HOH . 
F 3 HOH D 10 310 1 HOH HOH . 
F 3 HOH D 11 311 61 HOH HOH . 
F 3 HOH D 12 312 19 HOH HOH . 
F 3 HOH D 13 313 4 HOH HOH . 
F 3 HOH D 14 314 20 HOH HOH . 
F 3 HOH D 15 315 68 HOH HOH . 
F 3 HOH D 16 316 69 HOH HOH . 
F 3 HOH D 17 317 52 HOH HOH . 
F 3 HOH D 18 318 41 HOH HOH . 
F 3 HOH D 19 319 25 HOH HOH . 
F 3 HOH D 20 320 138 HOH HOH . 
F 3 HOH D 21 321 30 HOH HOH . 
F 3 HOH D 22 322 9 HOH HOH . 
F 3 HOH D 23 323 100 HOH HOH . 
F 3 HOH D 24 324 135 HOH HOH . 
F 3 HOH D 25 325 23 HOH HOH . 
F 3 HOH D 26 326 76 HOH HOH . 
F 3 HOH D 27 327 33 HOH HOH . 
F 3 HOH D 28 328 156 HOH HOH . 
F 3 HOH D 29 329 13 HOH HOH . 
F 3 HOH D 30 330 10 HOH HOH . 
F 3 HOH D 31 331 118 HOH HOH . 
F 3 HOH D 32 332 67 HOH HOH . 
F 3 HOH D 33 333 62 HOH HOH . 
F 3 HOH D 34 334 42 HOH HOH . 
F 3 HOH D 35 335 96 HOH HOH . 
F 3 HOH D 36 336 79 HOH HOH . 
F 3 HOH D 37 337 8 HOH HOH . 
F 3 HOH D 38 338 71 HOH HOH . 
F 3 HOH D 39 339 151 HOH HOH . 
F 3 HOH D 40 340 26 HOH HOH . 
F 3 HOH D 41 341 45 HOH HOH . 
F 3 HOH D 42 342 123 HOH HOH . 
F 3 HOH D 43 343 105 HOH HOH . 
F 3 HOH D 44 344 28 HOH HOH . 
F 3 HOH D 45 345 112 HOH HOH . 
F 3 HOH D 46 346 140 HOH HOH . 
F 3 HOH D 47 347 147 HOH HOH . 
F 3 HOH D 48 348 31 HOH HOH . 
F 3 HOH D 49 349 131 HOH HOH . 
F 3 HOH D 50 350 64 HOH HOH . 
F 3 HOH D 51 351 154 HOH HOH . 
F 3 HOH D 52 352 144 HOH HOH . 
F 3 HOH D 53 353 102 HOH HOH . 
F 3 HOH D 54 354 14 HOH HOH . 
F 3 HOH D 55 355 38 HOH HOH . 
F 3 HOH D 56 356 113 HOH HOH . 
F 3 HOH D 57 357 77 HOH HOH . 
F 3 HOH D 58 358 22 HOH HOH . 
F 3 HOH D 59 359 133 HOH HOH . 
F 3 HOH D 60 360 91 HOH HOH . 
F 3 HOH D 61 361 149 HOH HOH . 
F 3 HOH D 62 362 85 HOH HOH . 
F 3 HOH D 63 363 63 HOH HOH . 
F 3 HOH D 64 364 75 HOH HOH . 
F 3 HOH D 65 365 89 HOH HOH . 
F 3 HOH D 66 366 88 HOH HOH . 
F 3 HOH D 67 367 120 HOH HOH . 
F 3 HOH D 68 368 60 HOH HOH . 
F 3 HOH D 69 369 117 HOH HOH . 
F 3 HOH D 70 370 148 HOH HOH . 
F 3 HOH D 71 371 65 HOH HOH . 
F 3 HOH D 72 372 153 HOH HOH . 
F 3 HOH D 73 373 82 HOH HOH . 
F 3 HOH D 74 374 111 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           ZN 
_atom_site.label_atom_id         ZN 
_atom_site.label_comp_id         ZN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               35.941 
_atom_site.Cartn_y               -33.947 
_atom_site.Cartn_z               3.142 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        27.28 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          ZN 
_atom_site.auth_comp_id          ZN 
_atom_site.auth_seq_id           201 
_atom_site.auth_asym_id          D 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           278 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           1 
#