data_7DBT
#
_model_server_result.job_id            AK--nF-LEVLMuql_ZcQRHA 
_model_server_result.datetime_utc      '2024-11-28 14:48:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7dbt 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":302}' 
#
_entry.id    7DBT 
#
_exptl.entry_id    7DBT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              54.938 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MANGANESE (II) ION' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          92 
_cell.angle_gamma         90 
_cell.entry_id            7DBT 
_cell.length_a            48.4 
_cell.length_b            41.16 
_cell.length_c            79.768 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7DBT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,G 1 1 
B,E,F,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 33 A CYS 91 1_555 A SG CYS 39 A CYS 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? 
disulf ? disulf2 A SG CYS 88 A CYS 146 1_555 A SG CYS 167 A CYS 225 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? 
disulf ? disulf3 A SG CYS 118 A CYS 176 1_555 A SG CYS 142 A CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf4 B SG CYS 33 B CYS 91 1_555 B SG CYS 39 B CYS 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? 
disulf ? disulf5 B SG CYS 88 B CYS 146 1_555 B SG CYS 167 B CYS 225 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? 
disulf ? disulf6 B SG CYS 118 B CYS 176 1_555 B SG CYS 142 B CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
metalc ? metalc1 A OE1 GLU 14 A GLU 72 1_555 D MN MN . A MN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.588 ? 
metalc ? metalc2 A OE2 GLU 14 A GLU 72 1_555 D MN MN . A MN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? 
metalc ? metalc3 A O ALA 38 A ALA 96 1_555 C MN MN . A MN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? 
metalc ? metalc4 A OD1 ASP 40 A ASP 98 1_555 C MN MN . A MN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? 
metalc ? metalc5 A OE1 GLU 50 A GLU 108 1_555 D MN MN . A MN 1002 2_645 ? ? ? ? ? ? ? ? ? ? ? ? 1.859 ? 
metalc ? metalc6 A OE2 GLU 50 A GLU 108 1_555 D MN MN . A MN 1002 2_645 ? ? ? ? ? ? ? ? ? ? ? ? 2.644 ? 
metalc ? metalc7 A OD1 ASP 73 A ASP 131 1_555 C MN MN . A MN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? 
metalc ? metalc8 C MN MN . A MN 1001 1_555 G O HOH . A HOH 1109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? 
metalc ? metalc9 D MN MN . A MN 1002 1_555 G O HOH . A HOH 1133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? 
metalc ? metalc10 D MN MN . A MN 1002 1_555 G O HOH . A HOH 1144 2_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.602 ? 
metalc ? metalc11 B OE1 GLU 14 B GLU 72 1_555 F MN MN . B MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? 
metalc ? metalc12 B OE2 GLU 14 B GLU 72 1_555 F MN MN . B MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? 
metalc ? metalc13 B O ALA 38 B ALA 96 1_555 E MN MN . B MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.48 ? 
metalc ? metalc14 B OD1 ASP 40 B ASP 98 1_555 E MN MN . B MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.546 ? 
metalc ? metalc15 B OE1 GLU 50 B GLU 108 1_555 F MN MN . B MN 302 2_546 ? ? ? ? ? ? ? ? ? ? ? ? 1.798 ? 
metalc ? metalc16 B OE2 GLU 50 B GLU 108 1_555 F MN MN . B MN 302 2_546 ? ? ? ? ? ? ? ? ? ? ? ? 2.551 ? 
metalc ? metalc17 B OD1 ASP 73 B ASP 131 1_555 E MN MN . B MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? 
metalc ? metalc18 E MN MN . B MN 301 1_555 H O HOH . B HOH 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? 
metalc ? metalc19 F MN MN . B MN 302 1_555 H O HOH . B HOH 437 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? 
metalc ? metalc20 F MN MN . B MN 302 1_555 H O HOH . B HOH 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.528 ? 
#
_chem_comp.formula           'Mn 2' 
_chem_comp.formula_weight    54.938 
_chem_comp.id                MN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MANGANESE (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     7DBT 
_atom_sites.fract_transf_matrix[1][1]    0.020661 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000723 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.024295 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012544 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MN A 1 1001 1001 MN MN . 
D 2 MN A 1 1002 1002 MN MN . 
E 2 MN B 1 301 1003 MN MN . 
F 2 MN B 1 302 1004 MN MN . 
G 3 HOH A 1 1101 75 HOH HOH . 
G 3 HOH A 2 1102 11 HOH HOH . 
G 3 HOH A 3 1103 2 HOH HOH . 
G 3 HOH A 4 1104 43 HOH HOH . 
G 3 HOH A 5 1105 76 HOH HOH . 
G 3 HOH A 6 1106 3 HOH HOH . 
G 3 HOH A 7 1107 20 HOH HOH . 
G 3 HOH A 8 1108 14 HOH HOH . 
G 3 HOH A 9 1109 46 HOH HOH . 
G 3 HOH A 10 1110 53 HOH HOH . 
G 3 HOH A 11 1111 5 HOH HOH . 
G 3 HOH A 12 1112 10 HOH HOH . 
G 3 HOH A 13 1113 107 HOH HOH . 
G 3 HOH A 14 1114 61 HOH HOH . 
G 3 HOH A 15 1115 58 HOH HOH . 
G 3 HOH A 16 1116 78 HOH HOH . 
G 3 HOH A 17 1117 30 HOH HOH . 
G 3 HOH A 18 1118 15 HOH HOH . 
G 3 HOH A 19 1119 19 HOH HOH . 
G 3 HOH A 20 1120 68 HOH HOH . 
G 3 HOH A 21 1121 26 HOH HOH . 
G 3 HOH A 22 1122 39 HOH HOH . 
G 3 HOH A 23 1123 66 HOH HOH . 
G 3 HOH A 24 1124 34 HOH HOH . 
G 3 HOH A 25 1125 73 HOH HOH . 
G 3 HOH A 26 1126 17 HOH HOH . 
G 3 HOH A 27 1127 24 HOH HOH . 
G 3 HOH A 28 1128 104 HOH HOH . 
G 3 HOH A 29 1129 98 HOH HOH . 
G 3 HOH A 30 1130 108 HOH HOH . 
G 3 HOH A 31 1131 105 HOH HOH . 
G 3 HOH A 32 1132 65 HOH HOH . 
G 3 HOH A 33 1133 1 HOH HOH . 
G 3 HOH A 34 1134 18 HOH HOH . 
G 3 HOH A 35 1135 70 HOH HOH . 
G 3 HOH A 36 1136 99 HOH HOH . 
G 3 HOH A 37 1137 55 HOH HOH . 
G 3 HOH A 38 1138 106 HOH HOH . 
G 3 HOH A 39 1139 102 HOH HOH . 
G 3 HOH A 40 1140 77 HOH HOH . 
G 3 HOH A 41 1141 103 HOH HOH . 
G 3 HOH A 42 1142 71 HOH HOH . 
G 3 HOH A 43 1143 62 HOH HOH . 
G 3 HOH A 44 1144 6 HOH HOH . 
G 3 HOH A 45 1145 74 HOH HOH . 
G 3 HOH A 46 1146 23 HOH HOH . 
G 3 HOH A 47 1147 31 HOH HOH . 
G 3 HOH A 48 1148 97 HOH HOH . 
H 3 HOH B 1 401 49 HOH HOH . 
H 3 HOH B 2 402 48 HOH HOH . 
H 3 HOH B 3 403 57 HOH HOH . 
H 3 HOH B 4 404 88 HOH HOH . 
H 3 HOH B 5 405 13 HOH HOH . 
H 3 HOH B 6 406 47 HOH HOH . 
H 3 HOH B 7 407 21 HOH HOH . 
H 3 HOH B 8 408 37 HOH HOH . 
H 3 HOH B 9 409 42 HOH HOH . 
H 3 HOH B 10 410 32 HOH HOH . 
H 3 HOH B 11 411 8 HOH HOH . 
H 3 HOH B 12 412 83 HOH HOH . 
H 3 HOH B 13 413 9 HOH HOH . 
H 3 HOH B 14 414 40 HOH HOH . 
H 3 HOH B 15 415 33 HOH HOH . 
H 3 HOH B 16 416 22 HOH HOH . 
H 3 HOH B 17 417 69 HOH HOH . 
H 3 HOH B 18 418 45 HOH HOH . 
H 3 HOH B 19 419 12 HOH HOH . 
H 3 HOH B 20 420 93 HOH HOH . 
H 3 HOH B 21 421 81 HOH HOH . 
H 3 HOH B 22 422 35 HOH HOH . 
H 3 HOH B 23 423 79 HOH HOH . 
H 3 HOH B 24 424 84 HOH HOH . 
H 3 HOH B 25 425 44 HOH HOH . 
H 3 HOH B 26 426 28 HOH HOH . 
H 3 HOH B 27 427 16 HOH HOH . 
H 3 HOH B 28 428 59 HOH HOH . 
H 3 HOH B 29 429 38 HOH HOH . 
H 3 HOH B 30 430 92 HOH HOH . 
H 3 HOH B 31 431 100 HOH HOH . 
H 3 HOH B 32 432 63 HOH HOH . 
H 3 HOH B 33 433 27 HOH HOH . 
H 3 HOH B 34 434 90 HOH HOH . 
H 3 HOH B 35 435 91 HOH HOH . 
H 3 HOH B 36 436 54 HOH HOH . 
H 3 HOH B 37 437 64 HOH HOH . 
H 3 HOH B 38 438 96 HOH HOH . 
H 3 HOH B 39 439 67 HOH HOH . 
H 3 HOH B 40 440 36 HOH HOH . 
H 3 HOH B 41 441 60 HOH HOH . 
H 3 HOH B 42 442 86 HOH HOH . 
H 3 HOH B 43 443 85 HOH HOH . 
H 3 HOH B 44 444 82 HOH HOH . 
H 3 HOH B 45 445 29 HOH HOH . 
H 3 HOH B 46 446 95 HOH HOH . 
H 3 HOH B 47 447 56 HOH HOH . 
H 3 HOH B 48 448 101 HOH HOH . 
H 3 HOH B 49 449 80 HOH HOH . 
H 3 HOH B 50 450 94 HOH HOH . 
H 3 HOH B 51 451 72 HOH HOH . 
H 3 HOH B 52 452 87 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MN 
_atom_site.label_atom_id         MN 
_atom_site.label_comp_id         MN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         F 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               -1.104 
_atom_site.Cartn_y               4.117 
_atom_site.Cartn_z               40.298 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        21.38 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MN 
_atom_site.auth_comp_id          MN 
_atom_site.auth_seq_id           302 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           301 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           1 
#