data_7DC8
#
_model_server_result.job_id            KWGDsTTssQs5XO-09bhn1Q 
_model_server_result.datetime_utc      '2025-08-30 23:34:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7dc8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":301}' 
#
_entry.id    7DC8 
#
_exptl.entry_id    7DC8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7DC8 
_cell.length_a            103.043 
_cell.length_b            185.612 
_cell.length_c            152.085 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7DC8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        21 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? trimeric 3 author_defined_assembly 1 
? trimeric 3 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,G,H,I,J,K,L,S,T,U 1 1 
D,E,F,M,N,O,P,Q,R,V,W,X 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 H N N 
? 5 O N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 22 A CYS 23 1_555 A SG CYS 90 A CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
disulf ? disulf2 A SG CYS 138 A CYS 135 1_555 A SG CYS 197 A CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf3 B SG CYS 22 B CYS 22 1_555 B SG CYS 96 B CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf4 B SG CYS 149 B CYS 140 1_555 B SG CYS 205 B CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf5 C SG CYS 11 C CYS 121 1_555 C SG CYS 22 C CYS 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf6 C SG CYS 55 C CYS 165 1_555 C SG CYS 66 C CYS 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf7 D SG CYS 22 D CYS 23 1_555 D SG CYS 90 D CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf8 D SG CYS 138 D CYS 135 1_555 D SG CYS 197 D CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf9 E SG CYS 22 E CYS 22 1_555 E SG CYS 96 E CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
disulf ? disulf10 E SG CYS 149 E CYS 140 1_555 E SG CYS 205 E CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf11 F SG CYS 11 F CYS 121 1_555 F SG CYS 22 F CYS 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf12 F SG CYS 55 F CYS 165 1_555 F SG CYS 66 F CYS 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 70 n n 
PG O2G ATP sing 71 n n 
PG O3G ATP sing 72 n n 
PG O3B ATP sing 73 n n 
O2G HOG2 ATP sing 74 n n 
O3G HOG3 ATP sing 75 n n 
PB O1B ATP doub 76 n n 
PB O2B ATP sing 77 n n 
PB O3B ATP sing 78 n n 
PB O3A ATP sing 79 n n 
O2B HOB2 ATP sing 80 n n 
PA O1A ATP doub 81 n n 
PA O2A ATP sing 82 n n 
PA O3A ATP sing 83 n n 
PA O5' ATP sing 84 n n 
O2A HOA2 ATP sing 85 n n 
O5' C5' ATP sing 86 n n 
C5' C4' ATP sing 87 n n 
C5' "H5'1" ATP sing 88 n n 
C5' "H5'2" ATP sing 89 n n 
C4' O4' ATP sing 90 n n 
C4' C3' ATP sing 91 n n 
C4' H4' ATP sing 92 n n 
O4' C1' ATP sing 93 n n 
C3' O3' ATP sing 94 n n 
C3' C2' ATP sing 95 n n 
C3' H3' ATP sing 96 n n 
O3' HO3' ATP sing 97 n n 
C2' O2' ATP sing 98 n n 
C2' C1' ATP sing 99 n n 
C2' H2' ATP sing 100 n n 
O2' HO2' ATP sing 101 n n 
C1' N9 ATP sing 102 n n 
C1' H1' ATP sing 103 n n 
N9 C8 ATP sing 104 n y 
N9 C4 ATP sing 105 n y 
C8 N7 ATP doub 106 n y 
C8 H8 ATP sing 107 n n 
N7 C5 ATP sing 108 n y 
C5 C6 ATP sing 109 n y 
C5 C4 ATP doub 110 n y 
C6 N6 ATP sing 111 n n 
C6 N1 ATP doub 112 n y 
N6 HN61 ATP sing 113 n n 
N6 HN62 ATP sing 114 n n 
N1 C2 ATP sing 115 n y 
C2 N3 ATP doub 116 n y 
C2 H2 ATP sing 117 n n 
N3 C4 ATP sing 118 n y 
#
_atom_sites.entry_id                     7DC8 
_atom_sites.fract_transf_matrix[1][1]    0.009705 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005388 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006575 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 4 SO4 A 1 301 301 SO4 SO4 . 
H 5 ATP B 1 301 301 ATP ATP . 
I 4 SO4 B 1 302 302 SO4 SO4 . 
J 4 SO4 B 1 303 303 SO4 SO4 . 
K 4 SO4 C 1 401 401 SO4 SO4 . 
L 4 SO4 C 1 402 402 SO4 SO4 . 
M 4 SO4 D 1 301 301 SO4 SO4 . 
N 4 SO4 D 1 302 302 SO4 SO4 . 
O 5 ATP E 1 301 301 ATP ATP . 
P 4 SO4 E 1 302 302 SO4 SO4 . 
Q 4 SO4 F 1 401 401 SO4 SO4 . 
R 4 SO4 F 1 402 402 SO4 SO4 . 
S 6 HOH A 1 401 401 HOH HOH . 
S 6 HOH A 2 402 402 HOH HOH . 
S 6 HOH A 3 403 403 HOH HOH . 
S 6 HOH A 4 404 404 HOH HOH . 
T 6 HOH B 1 401 401 HOH HOH . 
T 6 HOH B 2 402 402 HOH HOH . 
T 6 HOH B 3 403 403 HOH HOH . 
T 6 HOH B 4 404 404 HOH HOH . 
T 6 HOH B 5 405 405 HOH HOH . 
T 6 HOH B 6 406 406 HOH HOH . 
U 6 HOH C 1 501 501 HOH HOH . 
U 6 HOH C 2 502 502 HOH HOH . 
U 6 HOH C 3 503 503 HOH HOH . 
U 6 HOH C 4 504 504 HOH HOH . 
U 6 HOH C 5 505 505 HOH HOH . 
U 6 HOH C 6 506 506 HOH HOH . 
U 6 HOH C 7 507 507 HOH HOH . 
U 6 HOH C 8 508 508 HOH HOH . 
U 6 HOH C 9 509 509 HOH HOH . 
V 6 HOH D 1 401 401 HOH HOH . 
V 6 HOH D 2 402 402 HOH HOH . 
V 6 HOH D 3 403 403 HOH HOH . 
V 6 HOH D 4 404 404 HOH HOH . 
V 6 HOH D 5 405 405 HOH HOH . 
V 6 HOH D 6 406 406 HOH HOH . 
V 6 HOH D 7 407 407 HOH HOH . 
V 6 HOH D 8 408 408 HOH HOH . 
V 6 HOH D 9 409 409 HOH HOH . 
V 6 HOH D 10 410 410 HOH HOH . 
V 6 HOH D 11 411 411 HOH HOH . 
V 6 HOH D 12 412 412 HOH HOH . 
W 6 HOH E 1 401 401 HOH HOH . 
W 6 HOH E 2 402 402 HOH HOH . 
W 6 HOH E 3 403 403 HOH HOH . 
W 6 HOH E 4 404 404 HOH HOH . 
W 6 HOH E 5 405 405 HOH HOH . 
W 6 HOH E 6 406 406 HOH HOH . 
W 6 HOH E 7 407 407 HOH HOH . 
W 6 HOH E 8 408 408 HOH HOH . 
W 6 HOH E 9 409 409 HOH HOH . 
W 6 HOH E 10 410 410 HOH HOH . 
W 6 HOH E 11 411 411 HOH HOH . 
W 6 HOH E 12 412 412 HOH HOH . 
W 6 HOH E 13 413 413 HOH HOH . 
W 6 HOH E 14 414 414 HOH HOH . 
W 6 HOH E 15 415 415 HOH HOH . 
W 6 HOH E 16 416 416 HOH HOH . 
W 6 HOH E 17 417 417 HOH HOH . 
W 6 HOH E 18 418 418 HOH HOH . 
W 6 HOH E 19 419 419 HOH HOH . 
W 6 HOH E 20 420 420 HOH HOH . 
W 6 HOH E 21 421 421 HOH HOH . 
W 6 HOH E 22 422 422 HOH HOH . 
X 6 HOH F 1 501 501 HOH HOH . 
X 6 HOH F 2 502 502 HOH HOH . 
X 6 HOH F 3 503 503 HOH HOH . 
X 6 HOH F 4 504 504 HOH HOH . 
X 6 HOH F 5 505 505 HOH HOH . 
X 6 HOH F 6 506 506 HOH HOH . 
X 6 HOH F 7 507 507 HOH HOH . 
X 6 HOH F 8 508 508 HOH HOH . 
X 6 HOH F 9 509 509 HOH HOH . 
X 6 HOH F 10 510 510 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . H 5 4.213 24.634 23.381 1 94.33 ? PG ATP 301 B 1 
HETATM 2 O O1G ATP . . . H 5 3.016 23.793 23.805 1 87.45 ? O1G ATP 301 B 1 
HETATM 3 O O2G ATP . . . H 5 5.392 24.51 24.341 1 82.06 ? O2G ATP 301 B 1 
HETATM 4 O O3G ATP . . . H 5 3.88 26.084 23.052 1 75.52 ? O3G ATP 301 B 1 
HETATM 5 P PB ATP . . . H 5 5.163 22.457 21.702 1 51.7 ? PB ATP 301 B 1 
HETATM 6 O O1B ATP . . . H 5 4.425 21.909 20.504 1 53.16 ? O1B ATP 301 B 1 
HETATM 7 O O2B ATP . . . H 5 5.275 21.657 22.973 1 61.76 ? O2B ATP 301 B 1 
HETATM 8 O O3B ATP . . . H 5 4.701 23.986 21.962 1 59.19 ? O3B ATP 301 B 1 
HETATM 9 P PA ATP . . . H 5 7.936 22.138 21.934 1 51.47 ? PA ATP 301 B 1 
HETATM 10 O O1A ATP . . . H 5 8.154 20.705 21.473 1 47.7 ? O1A ATP 301 B 1 
HETATM 11 O O2A ATP . . . H 5 7.935 22.506 23.395 1 58.02 ? O2A ATP 301 B 1 
HETATM 12 O O3A ATP . . . H 5 6.648 22.771 21.246 1 51.44 ? O3A ATP 301 B 1 
HETATM 13 O O5' ATP . . . H 5 9.03 23.068 21.22 1 46.08 ? O5' ATP 301 B 1 
HETATM 14 C C5' ATP . . . H 5 9.194 24.451 21.49 1 39.1 ? C5' ATP 301 B 1 
HETATM 15 C C4' ATP . . . H 5 10.206 24.965 20.467 1 47 ? C4' ATP 301 B 1 
HETATM 16 O O4' ATP . . . H 5 11.471 24.311 20.609 1 50.21 ? O4' ATP 301 B 1 
HETATM 17 C C3' ATP . . . H 5 9.814 24.741 19.017 1 40.3 ? C3' ATP 301 B 1 
HETATM 18 O O3' ATP . . . H 5 10.017 26.028 18.419 1 37.86 ? O3' ATP 301 B 1 
HETATM 19 C C2' ATP . . . H 5 10.796 23.718 18.459 1 39.9 ? C2' ATP 301 B 1 
HETATM 20 O O2' ATP . . . H 5 11.135 24.025 17.091 1 46.37 ? O2' ATP 301 B 1 
HETATM 21 C C1' ATP . . . H 5 12.006 23.89 19.357 1 37.96 ? C1' ATP 301 B 1 
HETATM 22 N N9 ATP . . . H 5 12.898 22.719 19.591 1 40.6 ? N9 ATP 301 B 1 
HETATM 23 C C8 ATP . . . H 5 12.636 21.527 20.175 1 43.57 ? C8 ATP 301 B 1 
HETATM 24 N N7 ATP . . . H 5 13.732 20.716 20.221 1 36.11 ? N7 ATP 301 B 1 
HETATM 25 C C5 ATP . . . H 5 14.725 21.42 19.676 1 40.1 ? C5 ATP 301 B 1 
HETATM 26 C C6 ATP . . . H 5 16.157 21.183 19.412 1 48.53 ? C6 ATP 301 B 1 
HETATM 27 N N6 ATP . . . H 5 16.754 20.008 19.77 1 49.68 ? N6 ATP 301 B 1 
HETATM 28 N N1 ATP . . . H 5 16.844 22.192 18.81 1 45.61 ? N1 ATP 301 B 1 
HETATM 29 C C2 ATP . . . H 5 16.258 23.354 18.458 1 42.98 ? C2 ATP 301 B 1 
HETATM 30 N N3 ATP . . . H 5 14.967 23.638 18.668 1 39.27 ? N3 ATP 301 B 1 
HETATM 31 C C4 ATP . . . H 5 14.178 22.725 19.267 1 40.75 ? C4 ATP 301 B 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    74 
_model_server_stats.query_time_ms           608 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           31 
#