data_7DCB # _model_server_result.job_id 1TePVvxTtfavAcbdNyNrGw _model_server_result.datetime_utc '2024-11-15 16:20:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7dcb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":202}' # _entry.id 7DCB # _exptl.entry_id 7DCB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 268.226 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description INOSINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7DCB _cell.length_a 117.98 _cell.length_b 117.98 _cell.length_c 37.736 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7DCB _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall 'P 61' _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND1 HIS 56 A HIS 80 1_555 C ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc2 A SG CYS 86 A CYS 110 1_555 C ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? metalc ? metalc3 A SG CYS 89 A CYS 113 1_555 C ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? metalc ? metalc4 B ND1 HIS 56 D HIS 80 1_555 E ZN ZN . D ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? metalc ? metalc5 B SG CYS 86 D CYS 110 1_555 E ZN ZN . D ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc6 B SG CYS 89 D CYS 113 1_555 E ZN ZN . D ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? # _chem_comp.formula 'C10 H12 N4 O5' _chem_comp.formula_weight 268.226 _chem_comp.id NOS _chem_comp.mon_nstd_flag . _chem_comp.name INOSINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 NOS sing 237 n n N1 C6 NOS sing 238 n n C2 N3 NOS doub 239 n n O6 C6 NOS doub 240 n n C6 C5 NOS sing 241 n n N3 C4 NOS sing 242 n n O2' C2' NOS sing 243 n n C5 C4 NOS doub 244 n y C5 N7 NOS sing 245 n y C4 N9 NOS sing 246 n y N7 C8 NOS doub 247 n y N9 C8 NOS sing 248 n y N9 C1' NOS sing 249 n n C1' C2' NOS sing 250 n n C1' O4' NOS sing 251 n n C2' C3' NOS sing 252 n n O4' C4' NOS sing 253 n n C3' O3' NOS sing 254 n n C3' C4' NOS sing 255 n n C4' C5' NOS sing 256 n n C5' O5' NOS sing 257 n n C2 H1 NOS sing 258 n n N1 H2 NOS sing 259 n n C8 H3 NOS sing 260 n n C5' H4 NOS sing 261 n n C5' H5 NOS sing 262 n n O5' H6 NOS sing 263 n n C4' H7 NOS sing 264 n n C1' H8 NOS sing 265 n n C2' H9 NOS sing 266 n n O2' H10 NOS sing 267 n n C3' H11 NOS sing 268 n n O3' H12 NOS sing 269 n n # _atom_sites.entry_id 7DCB _atom_sites.fract_transf_matrix[1][1] 0.008476 _atom_sites.fract_transf_matrix[1][2] 0.004894 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009787 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0265 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 201 2 ZN ZN . D 3 NOS A 1 202 1 NOS NOS . E 2 ZN D 1 201 1 ZN ZN . F 3 NOS D 1 202 2 NOS NOS . G 4 HOH A 1 301 127 HOH HOH . G 4 HOH A 2 302 97 HOH HOH . G 4 HOH A 3 303 130 HOH HOH . G 4 HOH A 4 304 128 HOH HOH . G 4 HOH A 5 305 65 HOH HOH . G 4 HOH A 6 306 115 HOH HOH . G 4 HOH A 7 307 131 HOH HOH . G 4 HOH A 8 308 102 HOH HOH . G 4 HOH A 9 309 82 HOH HOH . G 4 HOH A 10 310 72 HOH HOH . G 4 HOH A 11 311 56 HOH HOH . G 4 HOH A 12 312 64 HOH HOH . G 4 HOH A 13 313 4 HOH HOH . G 4 HOH A 14 314 21 HOH HOH . G 4 HOH A 15 315 94 HOH HOH . G 4 HOH A 16 316 24 HOH HOH . G 4 HOH A 17 317 40 HOH HOH . G 4 HOH A 18 318 117 HOH HOH . G 4 HOH A 19 319 122 HOH HOH . G 4 HOH A 20 320 60 HOH HOH . G 4 HOH A 21 321 30 HOH HOH . G 4 HOH A 22 322 1 HOH HOH . G 4 HOH A 23 323 39 HOH HOH . G 4 HOH A 24 324 27 HOH HOH . G 4 HOH A 25 325 23 HOH HOH . G 4 HOH A 26 326 46 HOH HOH . G 4 HOH A 27 327 132 HOH HOH . G 4 HOH A 28 328 17 HOH HOH . G 4 HOH A 29 329 62 HOH HOH . G 4 HOH A 30 330 76 HOH HOH . G 4 HOH A 31 331 7 HOH HOH . G 4 HOH A 32 332 51 HOH HOH . G 4 HOH A 33 333 61 HOH HOH . G 4 HOH A 34 334 105 HOH HOH . G 4 HOH A 35 335 22 HOH HOH . G 4 HOH A 36 336 69 HOH HOH . G 4 HOH A 37 337 41 HOH HOH . G 4 HOH A 38 338 3 HOH HOH . G 4 HOH A 39 339 47 HOH HOH . G 4 HOH A 40 340 70 HOH HOH . G 4 HOH A 41 341 53 HOH HOH . G 4 HOH A 42 342 16 HOH HOH . G 4 HOH A 43 343 66 HOH HOH . G 4 HOH A 44 344 13 HOH HOH . G 4 HOH A 45 345 59 HOH HOH . G 4 HOH A 46 346 84 HOH HOH . G 4 HOH A 47 347 67 HOH HOH . G 4 HOH A 48 348 123 HOH HOH . G 4 HOH A 49 349 87 HOH HOH . G 4 HOH A 50 350 83 HOH HOH . G 4 HOH A 51 351 71 HOH HOH . G 4 HOH A 52 352 99 HOH HOH . G 4 HOH A 53 353 33 HOH HOH . G 4 HOH A 54 354 106 HOH HOH . G 4 HOH A 55 355 10 HOH HOH . G 4 HOH A 56 356 42 HOH HOH . G 4 HOH A 57 357 116 HOH HOH . G 4 HOH A 58 358 57 HOH HOH . G 4 HOH A 59 359 26 HOH HOH . G 4 HOH A 60 360 80 HOH HOH . G 4 HOH A 61 361 93 HOH HOH . G 4 HOH A 62 362 124 HOH HOH . G 4 HOH A 63 363 58 HOH HOH . G 4 HOH A 64 364 54 HOH HOH . G 4 HOH A 65 365 68 HOH HOH . G 4 HOH A 66 366 92 HOH HOH . G 4 HOH A 67 367 119 HOH HOH . G 4 HOH A 68 368 109 HOH HOH . G 4 HOH A 69 369 112 HOH HOH . G 4 HOH A 70 370 121 HOH HOH . G 4 HOH A 71 371 111 HOH HOH . G 4 HOH A 72 372 126 HOH HOH . G 4 HOH A 73 373 98 HOH HOH . H 4 HOH D 1 301 101 HOH HOH . H 4 HOH D 2 302 34 HOH HOH . H 4 HOH D 3 303 100 HOH HOH . H 4 HOH D 4 304 2 HOH HOH . H 4 HOH D 5 305 81 HOH HOH . H 4 HOH D 6 306 5 HOH HOH . H 4 HOH D 7 307 15 HOH HOH . H 4 HOH D 8 308 129 HOH HOH . H 4 HOH D 9 309 113 HOH HOH . H 4 HOH D 10 310 31 HOH HOH . H 4 HOH D 11 311 55 HOH HOH . H 4 HOH D 12 312 95 HOH HOH . H 4 HOH D 13 313 44 HOH HOH . H 4 HOH D 14 314 19 HOH HOH . H 4 HOH D 15 315 36 HOH HOH . H 4 HOH D 16 316 12 HOH HOH . H 4 HOH D 17 317 20 HOH HOH . H 4 HOH D 18 318 75 HOH HOH . H 4 HOH D 19 319 88 HOH HOH . H 4 HOH D 20 320 37 HOH HOH . H 4 HOH D 21 321 103 HOH HOH . H 4 HOH D 22 322 110 HOH HOH . H 4 HOH D 23 323 35 HOH HOH . H 4 HOH D 24 324 49 HOH HOH . H 4 HOH D 25 325 29 HOH HOH . H 4 HOH D 26 326 6 HOH HOH . H 4 HOH D 27 327 11 HOH HOH . H 4 HOH D 28 328 45 HOH HOH . H 4 HOH D 29 329 28 HOH HOH . H 4 HOH D 30 330 86 HOH HOH . H 4 HOH D 31 331 78 HOH HOH . H 4 HOH D 32 332 85 HOH HOH . H 4 HOH D 33 333 48 HOH HOH . H 4 HOH D 34 334 18 HOH HOH . H 4 HOH D 35 335 74 HOH HOH . H 4 HOH D 36 336 107 HOH HOH . H 4 HOH D 37 337 32 HOH HOH . H 4 HOH D 38 338 38 HOH HOH . H 4 HOH D 39 339 8 HOH HOH . H 4 HOH D 40 340 89 HOH HOH . H 4 HOH D 41 341 77 HOH HOH . H 4 HOH D 42 342 52 HOH HOH . H 4 HOH D 43 343 9 HOH HOH . H 4 HOH D 44 344 63 HOH HOH . H 4 HOH D 45 345 50 HOH HOH . H 4 HOH D 46 346 118 HOH HOH . H 4 HOH D 47 347 114 HOH HOH . H 4 HOH D 48 348 79 HOH HOH . H 4 HOH D 49 349 73 HOH HOH . H 4 HOH D 50 350 14 HOH HOH . H 4 HOH D 51 351 91 HOH HOH . H 4 HOH D 52 352 104 HOH HOH . H 4 HOH D 53 353 25 HOH HOH . H 4 HOH D 54 354 133 HOH HOH . H 4 HOH D 55 355 125 HOH HOH . H 4 HOH D 56 356 120 HOH HOH . H 4 HOH D 57 357 96 HOH HOH . H 4 HOH D 58 358 108 HOH HOH . H 4 HOH D 59 359 90 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N9 NOS . . . F 3 -38.706 -32.096 5.041 1 41.37 ? N9 NOS 202 D 1 HETATM 2 C C4 NOS . . . F 3 -38.909 -32.869 3.967 1 36.9 ? C4 NOS 202 D 1 HETATM 3 N N3 NOS . . . F 3 -39.204 -32.605 2.666 1 33.71 ? N3 NOS 202 D 1 HETATM 4 C C2 NOS . . . F 3 -39.369 -33.633 1.788 1 41.72 ? C2 NOS 202 D 1 HETATM 5 N N1 NOS . . . F 3 -39.228 -34.916 2.198 1 32.58 ? N1 NOS 202 D 1 HETATM 6 C C6 NOS . . . F 3 -38.932 -35.165 3.478 1 28.66 ? C6 NOS 202 D 1 HETATM 7 O O6 NOS . . . F 3 -38.857 -36.622 3.635 1 26.11 ? O6 NOS 202 D 1 HETATM 8 C C5 NOS . . . F 3 -38.772 -34.128 4.382 1 34.58 ? C5 NOS 202 D 1 HETATM 9 N N7 NOS . . . F 3 -38.481 -34.118 5.719 1 34.71 ? N7 NOS 202 D 1 HETATM 10 C C8 NOS . . . F 3 -38.432 -32.869 6.128 1 40.56 ? C8 NOS 202 D 1 HETATM 11 C C5' NOS . . . F 3 -40.484 -28.471 2.991 1 42.25 ? C5' NOS 202 D 1 HETATM 12 O O5' NOS . . . F 3 -39.943 -29.225 1.912 1 54.96 ? O5' NOS 202 D 1 HETATM 13 C C4' NOS . . . F 3 -39.766 -28.74 4.292 1 39.81 ? C4' NOS 202 D 1 HETATM 14 O O4' NOS . . . F 3 -39.954 -30.13 4.689 1 46.15 ? O4' NOS 202 D 1 HETATM 15 C C1' NOS . . . F 3 -38.72 -30.635 5.148 1 40.67 ? C1' NOS 202 D 1 HETATM 16 C C2' NOS . . . F 3 -37.679 -29.926 4.299 1 44.98 ? C2' NOS 202 D 1 HETATM 17 O O2' NOS . . . F 3 -36.381 -30.039 4.849 1 45.43 ? O2' NOS 202 D 1 HETATM 18 C C3' NOS . . . F 3 -38.249 -28.504 4.266 1 34.13 ? C3' NOS 202 D 1 HETATM 19 O O3' NOS . . . F 3 -37.867 -27.814 5.454 1 33.91 ? O3' NOS 202 D 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 19 #