data_7DCE # _model_server_result.job_id SMwrlucTlS-Svt89L9NcsA _model_server_result.datetime_utc '2024-11-09 01:56:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7dce # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 7DCE # _exptl.entry_id 7DCE _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 782.082 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DILINOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7DCE _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7DCE _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 25 B CYS 126 1_555 A SG CYS 84 B CYS 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 C SG CYS 21 H CYS 21 1_555 C SG CYS 92 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 C SG CYS 139 H CYS 139 1_555 C SG CYS 195 H CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 D SG CYS 24 L CYS 24 1_555 D SG CYS 89 L CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf5 D SG CYS 81 L CYS 81 1_555 D SG CYS 175 L CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf6 D SG CYS 138 L CYS 138 1_555 D SG CYS 198 L CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 C C PCA 1 H PCA 1 1_555 C N SER 2 H SER 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'C44 H80 N O8 P' _chem_comp.formula_weight 782.082 _chem_comp.id DLP _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DILINOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms DI-LINOLEOYL-3-SN-PHOSPHATIDYLCHOLINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 DLP sing 83 n n C1 O3P DLP sing 84 n n C1 HC11 DLP sing 85 n n C1 HC12 DLP sing 86 n n C2 C3 DLP sing 87 n n C2 O2 DLP sing 88 n n C2 HC2 DLP sing 89 n n C3 O3 DLP sing 90 n n C3 HC31 DLP sing 91 n n C3 HC32 DLP sing 92 n n C4 C5 DLP sing 93 n n C4 O4P DLP sing 94 n n C4 HC41 DLP sing 95 n n C4 HC42 DLP sing 96 n n C5 N DLP sing 97 n n C5 HC51 DLP sing 98 n n C5 HC52 DLP sing 99 n n C6 N DLP sing 100 n n C6 HC61 DLP sing 101 n n C6 HC62 DLP sing 102 n n C6 HC63 DLP sing 103 n n C7 N DLP sing 104 n n C7 HC71 DLP sing 105 n n C7 HC72 DLP sing 106 n n C7 HC73 DLP sing 107 n n C8 N DLP sing 108 n n C8 HC81 DLP sing 109 n n C8 HC82 DLP sing 110 n n C8 HC83 DLP sing 111 n n C11 C12 DLP sing 112 n n C11 O3 DLP sing 113 n n C11 O11 DLP doub 114 n n C12 C13 DLP sing 115 n n C12 H121 DLP sing 116 n n C12 H122 DLP sing 117 n n C13 C14 DLP sing 118 n n C13 H131 DLP sing 119 n n C13 H132 DLP sing 120 n n C14 C15 DLP sing 121 n n C14 H141 DLP sing 122 n n C14 H142 DLP sing 123 n n C15 C16 DLP sing 124 n n C15 H151 DLP sing 125 n n C15 H152 DLP sing 126 n n C16 C17 DLP sing 127 n n C16 H161 DLP sing 128 n n C16 H162 DLP sing 129 n n C17 C18 DLP sing 130 n n C17 H171 DLP sing 131 n n C17 H172 DLP sing 132 n n C18 C19 DLP sing 133 n n C18 H181 DLP sing 134 n n C18 H182 DLP sing 135 n n C19 C20 DLP doub 136 z n C19 H19 DLP sing 137 n n C20 C21 DLP sing 138 n n C20 H20 DLP sing 139 n n C21 C22 DLP sing 140 n n C21 H211 DLP sing 141 n n C21 H212 DLP sing 142 n n C22 C23 DLP doub 143 z n C22 H22 DLP sing 144 n n C23 C24 DLP sing 145 n n C23 H23 DLP sing 146 n n C24 C25 DLP sing 147 n n C24 H241 DLP sing 148 n n C24 H242 DLP sing 149 n n C25 C26 DLP sing 150 n n C25 H251 DLP sing 151 n n C25 H252 DLP sing 152 n n C26 C27 DLP sing 153 n n C26 H261 DLP sing 154 n n C26 H262 DLP sing 155 n n C27 C28 DLP sing 156 n n C27 H271 DLP sing 157 n n C27 H272 DLP sing 158 n n C28 H281 DLP sing 159 n n C28 H282 DLP sing 160 n n C28 H283 DLP sing 161 n n C31 C32 DLP sing 162 n n C31 O2 DLP sing 163 n n C31 O31 DLP doub 164 n n C32 C33 DLP sing 165 n n C32 H321 DLP sing 166 n n C32 H322 DLP sing 167 n n C33 C34 DLP sing 168 n n C33 H331 DLP sing 169 n n C33 H332 DLP sing 170 n n C34 C35 DLP sing 171 n n C34 H341 DLP sing 172 n n C34 H342 DLP sing 173 n n C35 C36 DLP sing 174 n n C35 H351 DLP sing 175 n n C35 H352 DLP sing 176 n n C36 C37 DLP sing 177 n n C36 H361 DLP sing 178 n n C36 H362 DLP sing 179 n n C37 C38 DLP sing 180 n n C37 H371 DLP sing 181 n n C37 H372 DLP sing 182 n n C38 C39 DLP sing 183 n n C38 H381 DLP sing 184 n n C38 H382 DLP sing 185 n n C39 C40 DLP doub 186 z n C39 H39 DLP sing 187 n n C40 C41 DLP sing 188 n n C40 H40 DLP sing 189 n n C41 C42 DLP sing 190 n n C41 H411 DLP sing 191 n n C41 H412 DLP sing 192 n n C42 C43 DLP doub 193 z n C42 H42 DLP sing 194 n n C43 C44 DLP sing 195 n n C43 H43 DLP sing 196 n n C44 C45 DLP sing 197 n n C44 H441 DLP sing 198 n n C44 H442 DLP sing 199 n n C45 C46 DLP sing 200 n n C45 H451 DLP sing 201 n n C45 H452 DLP sing 202 n n C46 C47 DLP sing 203 n n C46 H461 DLP sing 204 n n C46 H462 DLP sing 205 n n C47 C48 DLP sing 206 n n C47 H471 DLP sing 207 n n C47 H472 DLP sing 208 n n C48 H481 DLP sing 209 n n C48 H482 DLP sing 210 n n C48 H483 DLP sing 211 n n O1P P DLP doub 212 n n O2P P DLP sing 213 n n O3P P DLP sing 214 n n O4P P DLP sing 215 n n # _atom_sites.entry_id 7DCE _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id E _pdbx_nonpoly_scheme.entity_id 5 _pdbx_nonpoly_scheme.mon_id DLP _pdbx_nonpoly_scheme.pdb_strand_id X _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 501 _pdbx_nonpoly_scheme.auth_seq_num 501 _pdbx_nonpoly_scheme.pdb_mon_id DLP _pdbx_nonpoly_scheme.auth_mon_id DLP _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DLP . . . E 5 101.466 88.079 104.864 1 85.82 ? C1 DLP 501 X 1 HETATM 2 C C2 DLP . . . E 5 102.379 88.289 103.678 1 85.82 ? C2 DLP 501 X 1 HETATM 3 C C3 DLP . . . E 5 102.101 87.353 102.523 1 85.82 ? C3 DLP 501 X 1 HETATM 4 C C4 DLP . . . E 5 98.793 89.586 108.069 1 85.82 ? C4 DLP 501 X 1 HETATM 5 C C5 DLP . . . E 5 97.418 89.726 107.464 1 85.82 ? C5 DLP 501 X 1 HETATM 6 C C6 DLP . . . E 5 96.341 89.564 109.672 1 85.82 ? C6 DLP 501 X 1 HETATM 7 C C7 DLP . . . E 5 95.009 90.132 107.73 1 85.82 ? C7 DLP 501 X 1 HETATM 8 C C8 DLP . . . E 5 96.594 91.733 108.622 1 85.82 ? C8 DLP 501 X 1 HETATM 9 C C11 DLP . . . E 5 101.604 85.055 102.149 1 85.82 ? C11 DLP 501 X 1 HETATM 10 C C12 DLP . . . E 5 101.235 85.6 100.789 1 85.82 ? C12 DLP 501 X 1 HETATM 11 C C13 DLP . . . E 5 100.987 84.532 99.769 1 85.82 ? C13 DLP 501 X 1 HETATM 12 C C14 DLP . . . E 5 100.405 85.073 98.472 1 85.82 ? C14 DLP 501 X 1 HETATM 13 C C15 DLP . . . E 5 101.388 85.817 97.599 1 85.82 ? C15 DLP 501 X 1 HETATM 14 C C16 DLP . . . E 5 100.759 86.493 96.404 1 85.82 ? C16 DLP 501 X 1 HETATM 15 C C17 DLP . . . E 5 101.556 86.36 95.113 1 85.82 ? C17 DLP 501 X 1 HETATM 16 C C18 DLP . . . E 5 100.766 86.635 93.87 1 85.82 ? C18 DLP 501 X 1 HETATM 17 C C19 DLP . . . E 5 101.603 86.677 92.629 1 85.82 ? C19 DLP 501 X 1 HETATM 18 C C20 DLP . . . E 5 101.461 85.88 91.585 1 85.82 ? C20 DLP 501 X 1 HETATM 19 C C21 DLP . . . E 5 102.266 85.935 90.323 1 85.82 ? C21 DLP 501 X 1 HETATM 20 C C22 DLP . . . E 5 103.057 84.688 90.075 1 85.82 ? C22 DLP 501 X 1 HETATM 21 C C23 DLP . . . E 5 102.56 83.504 89.77 1 85.82 ? C23 DLP 501 X 1 HETATM 22 C C24 DLP . . . E 5 101.238 83.229 89.125 1 85.82 ? C24 DLP 501 X 1 HETATM 23 C C25 DLP . . . E 5 101.297 83.284 87.631 1 85.82 ? C25 DLP 501 X 1 HETATM 24 C C26 DLP . . . E 5 102.412 82.447 87.028 1 85.82 ? C26 DLP 501 X 1 HETATM 25 C C27 DLP . . . E 5 102.274 80.966 87.28 1 85.82 ? C27 DLP 501 X 1 HETATM 26 C C28 DLP . . . E 5 103.429 80.145 86.758 1 85.82 ? C28 DLP 501 X 1 HETATM 27 C C31 DLP . . . E 5 102.937 89.983 102.086 1 85.82 ? C31 DLP 501 X 1 HETATM 28 C C32 DLP . . . E 5 102.129 90.742 101.078 1 85.82 ? C32 DLP 501 X 1 HETATM 29 C C33 DLP . . . E 5 102.87 91.006 99.807 1 85.82 ? C33 DLP 501 X 1 HETATM 30 C C34 DLP . . . E 5 102.071 90.586 98.589 1 85.82 ? C34 DLP 501 X 1 HETATM 31 C C35 DLP . . . E 5 102.631 91.044 97.266 1 85.82 ? C35 DLP 501 X 1 HETATM 32 C C36 DLP . . . E 5 101.746 90.696 96.097 1 85.82 ? C36 DLP 501 X 1 HETATM 33 C C37 DLP . . . E 5 102.239 91.185 94.743 1 85.82 ? C37 DLP 501 X 1 HETATM 34 C C38 DLP . . . E 5 101.359 90.758 93.613 1 85.82 ? C38 DLP 501 X 1 HETATM 35 C C39 DLP . . . E 5 101.851 91.168 92.262 1 85.82 ? C39 DLP 501 X 1 HETATM 36 C C40 DLP . . . E 5 101.248 90.82 91.14 1 85.82 ? C40 DLP 501 X 1 HETATM 37 C C41 DLP . . . E 5 101.752 91.071 89.757 1 85.82 ? C41 DLP 501 X 1 HETATM 38 C C42 DLP . . . E 5 102.193 89.801 89.104 1 85.82 ? C42 DLP 501 X 1 HETATM 39 C C43 DLP . . . E 5 102.987 89.698 88.058 1 85.82 ? C43 DLP 501 X 1 HETATM 40 C C44 DLP . . . E 5 103.545 88.399 87.57 1 85.82 ? C44 DLP 501 X 1 HETATM 41 C C45 DLP . . . E 5 104.188 88.492 86.225 1 85.82 ? C45 DLP 501 X 1 HETATM 42 C C46 DLP . . . E 5 103.366 87.844 85.127 1 85.82 ? C46 DLP 501 X 1 HETATM 43 C C47 DLP . . . E 5 104.035 86.674 84.46 1 85.82 ? C47 DLP 501 X 1 HETATM 44 C C48 DLP . . . E 5 103.1 85.877 83.587 1 85.82 ? C48 DLP 501 X 1 HETATM 45 N N DLP . . . E 5 96.342 90.288 108.372 1 85.82 ? N DLP 501 X 1 HETATM 46 O O2 DLP . . . E 5 102.24 89.649 103.183 1 85.82 ? O2 DLP 501 X 1 HETATM 47 O O3 DLP . . . E 5 101.945 86.005 103.022 1 85.82 ? O3 DLP 501 X 1 HETATM 48 O O11 DLP . . . E 5 101.601 83.885 102.427 1 85.82 ? O11 DLP 501 X 1 HETATM 49 O O31 DLP . . . E 5 104.097 89.703 101.947 1 85.82 ? O31 DLP 501 X 1 HETATM 50 O O1P DLP . . . E 5 101.087 87.33 107.827 1 85.82 ? O1P DLP 501 X 1 HETATM 51 O O2P DLP . . . E 5 101.851 89.771 108.323 1 85.82 ? O2P DLP 501 X 1 HETATM 52 O O3P DLP . . . E 5 101.999 88.809 106.003 1 85.82 ? O3P DLP 501 X 1 HETATM 53 O O4P DLP . . . E 5 99.75 89.299 107.013 1 85.82 ? O4P DLP 501 X 1 HETATM 54 P P DLP . . . E 5 101.214 88.767 107.403 1 85.82 ? P DLP 501 X 1 # _model_server_stats.io_time_ms 73 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 54 #