data_7DCW # _model_server_result.job_id myIXf8iQpL5CfKJ0fSGzOA _model_server_result.datetime_utc '2024-11-15 16:56:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7dcw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":202}' # _entry.id 7DCW # _exptl.entry_id 7DCW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 267.241 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ADENOSINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7DCW _cell.length_a 119.084 _cell.length_b 119.084 _cell.length_c 39.773 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7DCW _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall 'P 61' _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND1 HIS 56 A HIS 80 1_555 C ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? metalc ? metalc2 A SG CYS 86 A CYS 110 1_555 C ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? metalc ? metalc3 A SG CYS 89 A CYS 113 1_555 C ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc4 B ND1 HIS 56 D HIS 80 1_555 E ZN ZN . D ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? metalc ? metalc5 B SG CYS 86 D CYS 110 1_555 E ZN ZN . D ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc6 B SG CYS 89 D CYS 113 1_555 E ZN ZN . D ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? # _chem_comp.formula 'C10 H13 N5 O4' _chem_comp.formula_weight 267.241 _chem_comp.id ADN _chem_comp.mon_nstd_flag . _chem_comp.name ADENOSINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O5' C5' ADN sing 1 n n O5' HO5' ADN sing 2 n n C5' C4' ADN sing 3 n n C5' "H5'1" ADN sing 4 n n C5' "H5'2" ADN sing 5 n n C4' O4' ADN sing 6 n n C4' C3' ADN sing 7 n n C4' H4' ADN sing 8 n n O4' C1' ADN sing 9 n n C3' O3' ADN sing 10 n n C3' C2' ADN sing 11 n n C3' H3' ADN sing 12 n n O3' HO3' ADN sing 13 n n C2' O2' ADN sing 14 n n C2' C1' ADN sing 15 n n C2' H2' ADN sing 16 n n O2' HO2' ADN sing 17 n n C1' N9 ADN sing 18 n n C1' H1' ADN sing 19 n n N9 C8 ADN sing 20 n y N9 C4 ADN sing 21 n y C8 N7 ADN doub 22 n y C8 H8 ADN sing 23 n n N7 C5 ADN sing 24 n y C5 C6 ADN sing 25 n y C5 C4 ADN doub 26 n y C6 N6 ADN sing 27 n n C6 N1 ADN doub 28 n y N6 HN61 ADN sing 29 n n N6 HN62 ADN sing 30 n n N1 C2 ADN sing 31 n y C2 N3 ADN doub 32 n y C2 H2 ADN sing 33 n n N3 C4 ADN sing 34 n y # _atom_sites.entry_id 7DCW _atom_sites.fract_transf_matrix[1][1] 0.008397 _atom_sites.fract_transf_matrix[1][2] 0.004848 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009697 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025143 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 201 2 ZN ZN . D 3 ADN A 1 202 2 ADN ADN . E 2 ZN D 1 201 1 ZN ZN . F 3 ADN D 1 202 1 ADN ADN . G 4 HOH A 1 301 32 HOH HOH . G 4 HOH A 2 302 159 HOH HOH . G 4 HOH A 3 303 147 HOH HOH . G 4 HOH A 4 304 160 HOH HOH . G 4 HOH A 5 305 140 HOH HOH . G 4 HOH A 6 306 31 HOH HOH . G 4 HOH A 7 307 138 HOH HOH . G 4 HOH A 8 308 79 HOH HOH . G 4 HOH A 9 309 157 HOH HOH . G 4 HOH A 10 310 119 HOH HOH . G 4 HOH A 11 311 141 HOH HOH . G 4 HOH A 12 312 127 HOH HOH . G 4 HOH A 13 313 50 HOH HOH . G 4 HOH A 14 314 87 HOH HOH . G 4 HOH A 15 315 85 HOH HOH . G 4 HOH A 16 316 121 HOH HOH . G 4 HOH A 17 317 142 HOH HOH . G 4 HOH A 18 318 1 HOH HOH . G 4 HOH A 19 319 33 HOH HOH . G 4 HOH A 20 320 51 HOH HOH . G 4 HOH A 21 321 30 HOH HOH . G 4 HOH A 22 322 114 HOH HOH . G 4 HOH A 23 323 2 HOH HOH . G 4 HOH A 24 324 88 HOH HOH . G 4 HOH A 25 325 25 HOH HOH . G 4 HOH A 26 326 23 HOH HOH . G 4 HOH A 27 327 39 HOH HOH . G 4 HOH A 28 328 9 HOH HOH . G 4 HOH A 29 329 126 HOH HOH . G 4 HOH A 30 330 4 HOH HOH . G 4 HOH A 31 331 75 HOH HOH . G 4 HOH A 32 332 8 HOH HOH . G 4 HOH A 33 333 106 HOH HOH . G 4 HOH A 34 334 52 HOH HOH . G 4 HOH A 35 335 108 HOH HOH . G 4 HOH A 36 336 3 HOH HOH . G 4 HOH A 37 337 76 HOH HOH . G 4 HOH A 38 338 35 HOH HOH . G 4 HOH A 39 339 28 HOH HOH . G 4 HOH A 40 340 62 HOH HOH . G 4 HOH A 41 341 80 HOH HOH . G 4 HOH A 42 342 56 HOH HOH . G 4 HOH A 43 343 55 HOH HOH . G 4 HOH A 44 344 139 HOH HOH . G 4 HOH A 45 345 37 HOH HOH . G 4 HOH A 46 346 132 HOH HOH . G 4 HOH A 47 347 83 HOH HOH . G 4 HOH A 48 348 73 HOH HOH . G 4 HOH A 49 349 129 HOH HOH . G 4 HOH A 50 350 89 HOH HOH . G 4 HOH A 51 351 68 HOH HOH . G 4 HOH A 52 352 12 HOH HOH . G 4 HOH A 53 353 34 HOH HOH . G 4 HOH A 54 354 117 HOH HOH . G 4 HOH A 55 355 57 HOH HOH . G 4 HOH A 56 356 150 HOH HOH . G 4 HOH A 57 357 74 HOH HOH . G 4 HOH A 58 358 16 HOH HOH . G 4 HOH A 59 359 128 HOH HOH . G 4 HOH A 60 360 81 HOH HOH . G 4 HOH A 61 361 44 HOH HOH . G 4 HOH A 62 362 13 HOH HOH . G 4 HOH A 63 363 149 HOH HOH . G 4 HOH A 64 364 130 HOH HOH . G 4 HOH A 65 365 49 HOH HOH . G 4 HOH A 66 366 63 HOH HOH . G 4 HOH A 67 367 136 HOH HOH . G 4 HOH A 68 368 42 HOH HOH . G 4 HOH A 69 369 82 HOH HOH . G 4 HOH A 70 370 20 HOH HOH . G 4 HOH A 71 371 77 HOH HOH . G 4 HOH A 72 372 92 HOH HOH . G 4 HOH A 73 373 60 HOH HOH . G 4 HOH A 74 374 69 HOH HOH . G 4 HOH A 75 375 96 HOH HOH . G 4 HOH A 76 376 111 HOH HOH . G 4 HOH A 77 377 148 HOH HOH . G 4 HOH A 78 378 105 HOH HOH . G 4 HOH A 79 379 101 HOH HOH . G 4 HOH A 80 380 94 HOH HOH . H 4 HOH D 1 301 144 HOH HOH . H 4 HOH D 2 302 104 HOH HOH . H 4 HOH D 3 303 93 HOH HOH . H 4 HOH D 4 304 110 HOH HOH . H 4 HOH D 5 305 131 HOH HOH . H 4 HOH D 6 306 86 HOH HOH . H 4 HOH D 7 307 162 HOH HOH . H 4 HOH D 8 308 109 HOH HOH . H 4 HOH D 9 309 103 HOH HOH . H 4 HOH D 10 310 38 HOH HOH . H 4 HOH D 11 311 158 HOH HOH . H 4 HOH D 12 312 47 HOH HOH . H 4 HOH D 13 313 7 HOH HOH . H 4 HOH D 14 314 5 HOH HOH . H 4 HOH D 15 315 18 HOH HOH . H 4 HOH D 16 316 14 HOH HOH . H 4 HOH D 17 317 40 HOH HOH . H 4 HOH D 18 318 26 HOH HOH . H 4 HOH D 19 319 99 HOH HOH . H 4 HOH D 20 320 17 HOH HOH . H 4 HOH D 21 321 15 HOH HOH . H 4 HOH D 22 322 21 HOH HOH . H 4 HOH D 23 323 64 HOH HOH . H 4 HOH D 24 324 46 HOH HOH . H 4 HOH D 25 325 116 HOH HOH . H 4 HOH D 26 326 134 HOH HOH . H 4 HOH D 27 327 118 HOH HOH . H 4 HOH D 28 328 152 HOH HOH . H 4 HOH D 29 329 11 HOH HOH . H 4 HOH D 30 330 41 HOH HOH . H 4 HOH D 31 331 6 HOH HOH . H 4 HOH D 32 332 54 HOH HOH . H 4 HOH D 33 333 71 HOH HOH . H 4 HOH D 34 334 124 HOH HOH . H 4 HOH D 35 335 133 HOH HOH . H 4 HOH D 36 336 112 HOH HOH . H 4 HOH D 37 337 58 HOH HOH . H 4 HOH D 38 338 102 HOH HOH . H 4 HOH D 39 339 70 HOH HOH . H 4 HOH D 40 340 84 HOH HOH . H 4 HOH D 41 341 125 HOH HOH . H 4 HOH D 42 342 48 HOH HOH . H 4 HOH D 43 343 29 HOH HOH . H 4 HOH D 44 344 10 HOH HOH . H 4 HOH D 45 345 107 HOH HOH . H 4 HOH D 46 346 22 HOH HOH . H 4 HOH D 47 347 27 HOH HOH . H 4 HOH D 48 348 100 HOH HOH . H 4 HOH D 49 349 72 HOH HOH . H 4 HOH D 50 350 113 HOH HOH . H 4 HOH D 51 351 36 HOH HOH . H 4 HOH D 52 352 59 HOH HOH . H 4 HOH D 53 353 66 HOH HOH . H 4 HOH D 54 354 123 HOH HOH . H 4 HOH D 55 355 61 HOH HOH . H 4 HOH D 56 356 137 HOH HOH . H 4 HOH D 57 357 67 HOH HOH . H 4 HOH D 58 358 156 HOH HOH . H 4 HOH D 59 359 122 HOH HOH . H 4 HOH D 60 360 91 HOH HOH . H 4 HOH D 61 361 19 HOH HOH . H 4 HOH D 62 362 153 HOH HOH . H 4 HOH D 63 363 135 HOH HOH . H 4 HOH D 64 364 90 HOH HOH . H 4 HOH D 65 365 146 HOH HOH . H 4 HOH D 66 366 95 HOH HOH . H 4 HOH D 67 367 98 HOH HOH . H 4 HOH D 68 368 161 HOH HOH . H 4 HOH D 69 369 97 HOH HOH . H 4 HOH D 70 370 143 HOH HOH . H 4 HOH D 71 371 115 HOH HOH . H 4 HOH D 72 372 45 HOH HOH . H 4 HOH D 73 373 155 HOH HOH . H 4 HOH D 74 374 65 HOH HOH . H 4 HOH D 75 375 78 HOH HOH . H 4 HOH D 76 376 151 HOH HOH . H 4 HOH D 77 377 53 HOH HOH . H 4 HOH D 78 378 145 HOH HOH . H 4 HOH D 79 379 120 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O5' ADN . . . F 3 -5.423 -49.659 -4.688 1 30.8 ? O5' ADN 202 D 1 HETATM 2 C C5' ADN . . . F 3 -4.604 -50.094 -5.757 1 24.91 ? C5' ADN 202 D 1 HETATM 3 C C4' ADN . . . F 3 -5.223 -49.804 -7.095 1 25.45 ? C4' ADN 202 D 1 HETATM 4 O O4' ADN . . . F 3 -6.344 -50.7 -7.339 1 27.24 ? O4' ADN 202 D 1 HETATM 5 C C3' ADN . . . F 3 -5.751 -48.384 -7.265 1 23.04 ? C3' ADN 202 D 1 HETATM 6 O O3' ADN . . . F 3 -5.333 -47.897 -8.522 1 24.12 ? O3' ADN 202 D 1 HETATM 7 C C2' ADN . . . F 3 -7.264 -48.572 -7.302 1 23.78 ? C2' ADN 202 D 1 HETATM 8 O O2' ADN . . . F 3 -7.981 -47.619 -8.065 1 24.71 ? O2' ADN 202 D 1 HETATM 9 C C1' ADN . . . F 3 -7.39 -49.96 -7.906 1 24.48 ? C1' ADN 202 D 1 HETATM 10 N N9 ADN . . . F 3 -8.689 -50.622 -7.696 1 22.44 ? N9 ADN 202 D 1 HETATM 11 C C8 ADN . . . F 3 -9.602 -50.895 -8.65 1 20.33 ? C8 ADN 202 D 1 HETATM 12 N N7 ADN . . . F 3 -10.633 -51.509 -8.066 1 17.5 ? N7 ADN 202 D 1 HETATM 13 C C5 ADN . . . F 3 -10.356 -51.625 -6.757 1 19.28 ? C5 ADN 202 D 1 HETATM 14 C C6 ADN . . . F 3 -11.095 -52.179 -5.729 1 17.7 ? C6 ADN 202 D 1 HETATM 15 N N6 ADN . . . F 3 -12.39 -52.828 -5.649 1 15.02 ? N6 ADN 202 D 1 HETATM 16 N N1 ADN . . . F 3 -10.632 -52.189 -4.502 1 18.36 ? N1 ADN 202 D 1 HETATM 17 C C2 ADN . . . F 3 -9.416 -51.646 -4.274 1 19.48 ? C2 ADN 202 D 1 HETATM 18 N N3 ADN . . . F 3 -8.679 -51.091 -5.279 1 18.57 ? N3 ADN 202 D 1 HETATM 19 C C4 ADN . . . F 3 -9.16 -51.085 -6.532 1 18.04 ? C4 ADN 202 D 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 19 _model_server_stats.element_count 19 #