data_7DCZ # _model_server_result.job_id ZfkYFhSprIAJ4u_uxCOiEQ _model_server_result.datetime_utc '2024-12-26 14:05:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7dcz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":405}' # _entry.id 7DCZ # _exptl.entry_id 7DCZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7DCZ _cell.length_a 101.958 _cell.length_b 101.958 _cell.length_c 171.653 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7DCZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 178 A CYS 155 1_555 A SG CYS 382 A CYS 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.971 ? disulf ? disulf2 A SG CYS 240 A CYS 217 1_555 A SG CYS 405 A CYS 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? disulf ? disulf3 A SG CYS 292 A CYS 269 1_555 A SG CYS 342 A CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 7DCZ _atom_sites.fract_transf_matrix[1][1] 0.009808 _atom_sites.fract_transf_matrix[1][2] 0.005663 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011325 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005826 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IOD A 1 401 101 IOD IOD . C 2 IOD A 1 402 102 IOD IOD . D 2 IOD A 1 403 103 IOD IOD . E 2 IOD A 1 404 104 IOD IOD . F 3 GOL A 1 405 1 GOL GOL . G 4 H3C A 1 406 1 H3C B40 . H 5 HOH A 1 501 74 HOH HOH . H 5 HOH A 2 502 30 HOH HOH . H 5 HOH A 3 503 60 HOH HOH . H 5 HOH A 4 504 41 HOH HOH . H 5 HOH A 5 505 119 HOH HOH . H 5 HOH A 6 506 135 HOH HOH . H 5 HOH A 7 507 57 HOH HOH . H 5 HOH A 8 508 32 HOH HOH . H 5 HOH A 9 509 121 HOH HOH . H 5 HOH A 10 510 5 HOH HOH . H 5 HOH A 11 511 21 HOH HOH . H 5 HOH A 12 512 125 HOH HOH . H 5 HOH A 13 513 117 HOH HOH . H 5 HOH A 14 514 27 HOH HOH . H 5 HOH A 15 515 128 HOH HOH . H 5 HOH A 16 516 75 HOH HOH . H 5 HOH A 17 517 99 HOH HOH . H 5 HOH A 18 518 2 HOH HOH . H 5 HOH A 19 519 28 HOH HOH . H 5 HOH A 20 520 25 HOH HOH . H 5 HOH A 21 521 108 HOH HOH . H 5 HOH A 22 522 88 HOH HOH . H 5 HOH A 23 523 43 HOH HOH . H 5 HOH A 24 524 61 HOH HOH . H 5 HOH A 25 525 42 HOH HOH . H 5 HOH A 26 526 151 HOH HOH . H 5 HOH A 27 527 52 HOH HOH . H 5 HOH A 28 528 70 HOH HOH . H 5 HOH A 29 529 110 HOH HOH . H 5 HOH A 30 530 107 HOH HOH . H 5 HOH A 31 531 139 HOH HOH . H 5 HOH A 32 532 18 HOH HOH . H 5 HOH A 33 533 150 HOH HOH . H 5 HOH A 34 534 53 HOH HOH . H 5 HOH A 35 535 73 HOH HOH . H 5 HOH A 36 536 58 HOH HOH . H 5 HOH A 37 537 35 HOH HOH . H 5 HOH A 38 538 102 HOH HOH . H 5 HOH A 39 539 124 HOH HOH . H 5 HOH A 40 540 40 HOH HOH . H 5 HOH A 41 541 44 HOH HOH . H 5 HOH A 42 542 152 HOH HOH . H 5 HOH A 43 543 63 HOH HOH . H 5 HOH A 44 544 22 HOH HOH . H 5 HOH A 45 545 47 HOH HOH . H 5 HOH A 46 546 12 HOH HOH . H 5 HOH A 47 547 78 HOH HOH . H 5 HOH A 48 548 46 HOH HOH . H 5 HOH A 49 549 90 HOH HOH . H 5 HOH A 50 550 134 HOH HOH . H 5 HOH A 51 551 24 HOH HOH . H 5 HOH A 52 552 98 HOH HOH . H 5 HOH A 53 553 38 HOH HOH . H 5 HOH A 54 554 92 HOH HOH . H 5 HOH A 55 555 72 HOH HOH . H 5 HOH A 56 556 120 HOH HOH . H 5 HOH A 57 557 33 HOH HOH . H 5 HOH A 58 558 85 HOH HOH . H 5 HOH A 59 559 51 HOH HOH . H 5 HOH A 60 560 116 HOH HOH . H 5 HOH A 61 561 157 HOH HOH . H 5 HOH A 62 562 142 HOH HOH . H 5 HOH A 63 563 1 HOH HOH . H 5 HOH A 64 564 37 HOH HOH . H 5 HOH A 65 565 69 HOH HOH . H 5 HOH A 66 566 34 HOH HOH . H 5 HOH A 67 567 8 HOH HOH . H 5 HOH A 68 568 9 HOH HOH . H 5 HOH A 69 569 143 HOH HOH . H 5 HOH A 70 570 144 HOH HOH . H 5 HOH A 71 571 91 HOH HOH . H 5 HOH A 72 572 77 HOH HOH . H 5 HOH A 73 573 105 HOH HOH . H 5 HOH A 74 574 100 HOH HOH . H 5 HOH A 75 575 156 HOH HOH . H 5 HOH A 76 576 3 HOH HOH . H 5 HOH A 77 577 137 HOH HOH . H 5 HOH A 78 578 17 HOH HOH . H 5 HOH A 79 579 11 HOH HOH . H 5 HOH A 80 580 68 HOH HOH . H 5 HOH A 81 581 148 HOH HOH . H 5 HOH A 82 582 96 HOH HOH . H 5 HOH A 83 583 55 HOH HOH . H 5 HOH A 84 584 89 HOH HOH . H 5 HOH A 85 585 19 HOH HOH . H 5 HOH A 86 586 39 HOH HOH . H 5 HOH A 87 587 48 HOH HOH . H 5 HOH A 88 588 79 HOH HOH . H 5 HOH A 89 589 130 HOH HOH . H 5 HOH A 90 590 141 HOH HOH . H 5 HOH A 91 591 94 HOH HOH . H 5 HOH A 92 592 64 HOH HOH . H 5 HOH A 93 593 10 HOH HOH . H 5 HOH A 94 594 67 HOH HOH . H 5 HOH A 95 595 106 HOH HOH . H 5 HOH A 96 596 160 HOH HOH . H 5 HOH A 97 597 115 HOH HOH . H 5 HOH A 98 598 76 HOH HOH . H 5 HOH A 99 599 82 HOH HOH . H 5 HOH A 100 600 133 HOH HOH . H 5 HOH A 101 601 29 HOH HOH . H 5 HOH A 102 602 122 HOH HOH . H 5 HOH A 103 603 23 HOH HOH . H 5 HOH A 104 604 87 HOH HOH . H 5 HOH A 105 605 15 HOH HOH . H 5 HOH A 106 606 86 HOH HOH . H 5 HOH A 107 607 126 HOH HOH . H 5 HOH A 108 608 59 HOH HOH . H 5 HOH A 109 609 62 HOH HOH . H 5 HOH A 110 610 95 HOH HOH . H 5 HOH A 111 611 7 HOH HOH . H 5 HOH A 112 612 93 HOH HOH . H 5 HOH A 113 613 118 HOH HOH . H 5 HOH A 114 614 114 HOH HOH . H 5 HOH A 115 615 65 HOH HOH . H 5 HOH A 116 616 104 HOH HOH . H 5 HOH A 117 617 16 HOH HOH . H 5 HOH A 118 618 26 HOH HOH . H 5 HOH A 119 619 83 HOH HOH . H 5 HOH A 120 620 31 HOH HOH . H 5 HOH A 121 621 54 HOH HOH . H 5 HOH A 122 622 129 HOH HOH . H 5 HOH A 123 623 84 HOH HOH . H 5 HOH A 124 624 158 HOH HOH . H 5 HOH A 125 625 103 HOH HOH . H 5 HOH A 126 626 131 HOH HOH . H 5 HOH A 127 627 112 HOH HOH . H 5 HOH A 128 628 56 HOH HOH . H 5 HOH A 129 629 149 HOH HOH . H 5 HOH A 130 630 123 HOH HOH . H 5 HOH A 131 631 20 HOH HOH . H 5 HOH A 132 632 66 HOH HOH . H 5 HOH A 133 633 109 HOH HOH . H 5 HOH A 134 634 80 HOH HOH . H 5 HOH A 135 635 13 HOH HOH . H 5 HOH A 136 636 36 HOH HOH . H 5 HOH A 137 637 45 HOH HOH . H 5 HOH A 138 638 81 HOH HOH . H 5 HOH A 139 639 140 HOH HOH . H 5 HOH A 140 640 6 HOH HOH . H 5 HOH A 141 641 71 HOH HOH . H 5 HOH A 142 642 132 HOH HOH . H 5 HOH A 143 643 147 HOH HOH . H 5 HOH A 144 644 153 HOH HOH . H 5 HOH A 145 645 4 HOH HOH . H 5 HOH A 146 646 155 HOH HOH . H 5 HOH A 147 647 14 HOH HOH . H 5 HOH A 148 648 101 HOH HOH . H 5 HOH A 149 649 113 HOH HOH . H 5 HOH A 150 650 145 HOH HOH . H 5 HOH A 151 651 127 HOH HOH . H 5 HOH A 152 652 50 HOH HOH . H 5 HOH A 153 653 138 HOH HOH . H 5 HOH A 154 654 97 HOH HOH . H 5 HOH A 155 655 49 HOH HOH . H 5 HOH A 156 656 111 HOH HOH . H 5 HOH A 157 657 136 HOH HOH . H 5 HOH A 158 658 159 HOH HOH . H 5 HOH A 159 659 154 HOH HOH . H 5 HOH A 160 660 161 HOH HOH . H 5 HOH A 161 661 146 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 3 34.337 23.002 -7.592 1 32.03 ? C1 GOL 405 A 1 HETATM 2 O O1 GOL . . . F 3 33.683 23.865 -6.686 1 30.94 ? O1 GOL 405 A 1 HETATM 3 C C2 GOL . . . F 3 35.703 22.631 -7.028 1 32.51 ? C2 GOL 405 A 1 HETATM 4 O O2 GOL . . . F 3 36.431 23.813 -6.788 1 32.93 ? O2 GOL 405 A 1 HETATM 5 C C3 GOL . . . F 3 36.451 21.74 -8.014 1 32.89 ? C3 GOL 405 A 1 HETATM 6 O O3 GOL . . . F 3 37.848 21.878 -7.85 1 32.89 ? O3 GOL 405 A 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 21 _model_server_stats.element_count 6 #