data_7DDC # _model_server_result.job_id 2x-2SnKw77mqsNb50OQucQ _model_server_result.datetime_utc '2024-11-12 21:11:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ddc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 7DDC # _exptl.entry_id 7DDC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 463.493 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Tafenoquine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.861 _cell.angle_gamma 90 _cell.entry_id 7DDC _cell.length_a 112.294 _cell.length_b 54.675 _cell.length_c 44.79 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7DDC _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C24 H28 F3 N3 O3' _chem_comp.formula_weight 463.493 _chem_comp.id H3F _chem_comp.mon_nstd_flag . _chem_comp.name Tafenoquine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (4S)-N4-[2,6-dimethoxy-4-methyl-5-[3-(trifluoromethyl)phenoxy]quinolin-8-yl]pentane-1,4-diamine # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C01 C02 H3F sing 129 n n F31 C28 H3F sing 130 n n C03 C02 H3F doub 131 n y C03 C04 H3F sing 132 n y F30 C28 H3F sing 133 n n O32 C33 H3F sing 134 n n O32 C04 H3F sing 135 n n C02 C07 H3F sing 136 n y C25 C24 H3F doub 137 n y C25 C26 H3F sing 138 n y C28 C26 H3F sing 139 n n C28 F29 H3F sing 140 n n C24 C23 H3F sing 141 n y C04 N05 H3F doub 142 n y C26 C27 H3F doub 143 n y C23 C22 H3F doub 144 n y C27 C22 H3F sing 145 n y C22 O21 H3F sing 146 n n C07 C08 H3F doub 147 n y C07 C06 H3F sing 148 n y O21 C08 H3F sing 149 n n N05 C06 H3F sing 150 n y C08 C09 H3F sing 151 n y C06 C11 H3F doub 152 n y C09 O19 H3F sing 153 n n C09 C10 H3F doub 154 n y C11 C10 H3F sing 155 n y C11 N12 H3F sing 156 n n O19 C20 H3F sing 157 n n N12 C13 H3F sing 158 n n N18 C17 H3F sing 159 n n C13 C15 H3F sing 160 n n C13 C14 H3F sing 161 n n C15 C16 H3F sing 162 n n C17 C16 H3F sing 163 n n C01 H1 H3F sing 164 n n C01 H2 H3F sing 165 n n C01 H3 H3F sing 166 n n C03 H4 H3F sing 167 n n C10 H5 H3F sing 168 n n N12 H6 H3F sing 169 n n C13 H7 H3F sing 170 n n C14 H8 H3F sing 171 n n C14 H9 H3F sing 172 n n C14 H10 H3F sing 173 n n C15 H11 H3F sing 174 n n C15 H12 H3F sing 175 n n C16 H13 H3F sing 176 n n C16 H14 H3F sing 177 n n C17 H15 H3F sing 178 n n C17 H16 H3F sing 179 n n N18 H17 H3F sing 180 n n N18 H18 H3F sing 181 n n C20 H20 H3F sing 182 n n C20 H21 H3F sing 183 n n C20 H22 H3F sing 184 n n C23 H23 H3F sing 185 n n C24 H24 H3F sing 186 n n C25 H25 H3F sing 187 n n C27 H26 H3F sing 188 n n C33 H27 H3F sing 189 n n C33 H28 H3F sing 190 n n C33 H29 H3F sing 191 n n # _atom_sites.entry_id 7DDC _atom_sites.fract_transf_matrix[1][1] 0.008905 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001709 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01829 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022734 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 H3F A 1 401 310 H3F TQ . C 3 HOH A 1 501 371 HOH HOH . C 3 HOH A 2 502 362 HOH HOH . C 3 HOH A 3 503 408 HOH HOH . C 3 HOH A 4 504 370 HOH HOH . C 3 HOH A 5 505 404 HOH HOH . C 3 HOH A 6 506 393 HOH HOH . C 3 HOH A 7 507 406 HOH HOH . C 3 HOH A 8 508 390 HOH HOH . C 3 HOH A 9 509 378 HOH HOH . C 3 HOH A 10 510 401 HOH HOH . C 3 HOH A 11 511 409 HOH HOH . C 3 HOH A 12 512 383 HOH HOH . C 3 HOH A 13 513 394 HOH HOH . C 3 HOH A 14 514 356 HOH HOH . C 3 HOH A 15 515 359 HOH HOH . C 3 HOH A 16 516 400 HOH HOH . C 3 HOH A 17 517 384 HOH HOH . C 3 HOH A 18 518 352 HOH HOH . C 3 HOH A 19 519 373 HOH HOH . C 3 HOH A 20 520 398 HOH HOH . C 3 HOH A 21 521 387 HOH HOH . C 3 HOH A 22 522 350 HOH HOH . C 3 HOH A 23 523 358 HOH HOH . C 3 HOH A 24 524 365 HOH HOH . C 3 HOH A 25 525 376 HOH HOH . C 3 HOH A 26 526 379 HOH HOH . C 3 HOH A 27 527 385 HOH HOH . C 3 HOH A 28 528 399 HOH HOH . C 3 HOH A 29 529 374 HOH HOH . C 3 HOH A 30 530 367 HOH HOH . C 3 HOH A 31 531 375 HOH HOH . C 3 HOH A 32 532 351 HOH HOH . C 3 HOH A 33 533 368 HOH HOH . C 3 HOH A 34 534 372 HOH HOH . C 3 HOH A 35 535 364 HOH HOH . C 3 HOH A 36 536 363 HOH HOH . C 3 HOH A 37 537 360 HOH HOH . C 3 HOH A 38 538 355 HOH HOH . C 3 HOH A 39 539 353 HOH HOH . C 3 HOH A 40 540 366 HOH HOH . C 3 HOH A 41 541 357 HOH HOH . C 3 HOH A 42 542 391 HOH HOH . C 3 HOH A 43 543 380 HOH HOH . C 3 HOH A 44 544 377 HOH HOH . C 3 HOH A 45 545 382 HOH HOH . C 3 HOH A 46 546 388 HOH HOH . C 3 HOH A 47 547 407 HOH HOH . C 3 HOH A 48 548 405 HOH HOH . C 3 HOH A 49 549 389 HOH HOH . C 3 HOH A 50 550 354 HOH HOH . C 3 HOH A 51 551 361 HOH HOH . C 3 HOH A 52 552 402 HOH HOH . C 3 HOH A 53 553 397 HOH HOH . C 3 HOH A 54 554 381 HOH HOH . C 3 HOH A 55 555 395 HOH HOH . C 3 HOH A 56 556 369 HOH HOH . C 3 HOH A 57 557 403 HOH HOH . C 3 HOH A 58 558 386 HOH HOH . C 3 HOH A 59 559 396 HOH HOH . C 3 HOH A 60 560 392 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 H3F . . . B 2 4.513 -0.924 20.438 1 95.27 ? C01 H3F 401 A 1 HETATM 2 C C02 H3F . . . B 2 5.714 -1.038 21.318 1 92.85 ? C02 H3F 401 A 1 HETATM 3 C C03 H3F . . . B 2 6.684 -2.03 20.927 1 74.83 ? C03 H3F 401 A 1 HETATM 4 C C04 H3F . . . B 2 7.894 -2.265 21.69 1 62.44 ? C04 H3F 401 A 1 HETATM 5 N N05 H3F . . . B 2 8.127 -1.515 22.821 1 75 ? N05 H3F 401 A 1 HETATM 6 C C06 H3F . . . B 2 7.14 -0.487 23.266 1 84.75 ? C06 H3F 401 A 1 HETATM 7 C C07 H3F . . . B 2 5.882 -0.179 22.546 1 89.92 ? C07 H3F 401 A 1 HETATM 8 C C08 H3F . . . B 2 4.904 0.919 23.149 1 90.26 ? C08 H3F 401 A 1 HETATM 9 C C09 H3F . . . B 2 5.314 1.59 24.321 1 83.05 ? C09 H3F 401 A 1 HETATM 10 C C10 H3F . . . B 2 6.583 1.235 24.97 1 85.17 ? C10 H3F 401 A 1 HETATM 11 C C11 H3F . . . B 2 7.49 0.256 24.511 1 85.32 ? C11 H3F 401 A 1 HETATM 12 N N12 H3F . . . B 2 8.68 -0.045 25.212 1 93.7 ? N12 H3F 401 A 1 HETATM 13 C C13 H3F . . . B 2 8.985 -1.275 26.02 1 91.73 ? C13 H3F 401 A 1 HETATM 14 C C14 H3F . . . B 2 9.299 -0.869 27.441 1 96.02 ? C14 H3F 401 A 1 HETATM 15 C C15 H3F . . . B 2 7.771 -2.433 26.032 1 82.79 ? C15 H3F 401 A 1 HETATM 16 C C16 H3F . . . B 2 7.953 -3.833 26.792 1 65.52 ? C16 H3F 401 A 1 HETATM 17 C C17 H3F . . . B 2 9.389 -4.462 26.787 1 66.22 ? C17 H3F 401 A 1 HETATM 18 N N18 H3F . . . B 2 9.6 -5.401 25.654 1 59.2 ? N18 H3F 401 A 1 HETATM 19 O O19 H3F . . . B 2 4.456 2.649 24.882 1 77.61 ? O19 H3F 401 A 1 HETATM 20 C C20 H3F . . . B 2 3.103 2.382 25.372 1 62.38 ? C20 H3F 401 A 1 HETATM 21 O O21 H3F . . . B 2 3.655 1.477 22.592 1 95.51 ? O21 H3F 401 A 1 HETATM 22 C C22 H3F . . . B 2 2.401 0.999 22.253 1 100.18 ? C22 H3F 401 A 1 HETATM 23 C C23 H3F . . . B 2 1.346 1.918 22.026 1 108.59 ? C23 H3F 401 A 1 HETATM 24 C C24 H3F . . . B 2 0.056 1.498 21.666 1 108.31 ? C24 H3F 401 A 1 HETATM 25 C C25 H3F . . . B 2 -0.196 0.155 21.505 1 106.65 ? C25 H3F 401 A 1 HETATM 26 C C26 H3F . . . B 2 0.873 -0.731 21.729 1 111.73 ? C26 H3F 401 A 1 HETATM 27 C C27 H3F . . . B 2 2.153 -0.339 22.092 1 100.5 ? C27 H3F 401 A 1 HETATM 28 C C28 H3F . . . B 2 0.625 -2.236 21.555 1 125.21 ? C28 H3F 401 A 1 HETATM 29 F F29 H3F . . . B 2 0.268 -2.829 22.722 1 133.41 ? F29 H3F 401 A 1 HETATM 30 F F30 H3F . . . B 2 1.673 -2.843 21.063 1 122.33 ? F30 H3F 401 A 1 HETATM 31 F F31 H3F . . . B 2 -0.395 -2.488 20.722 1 133.51 ? F31 H3F 401 A 1 HETATM 32 O O32 H3F . . . B 2 8.92 -3.322 21.225 1 48.31 ? O32 H3F 401 A 1 HETATM 33 C C33 H3F . . . B 2 8.687 -4.714 21.337 1 31.33 ? C33 H3F 401 A 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 342 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 33 #