data_7DDQ
#
_model_server_result.job_id            ZLNma9_1ZXkYK_QP3VrYyQ 
_model_server_result.datetime_utc      '2024-10-19 22:36:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7ddq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"CB","auth_seq_id":102}' 
#
_entry.id    7DDQ 
#
_exptl.entry_id    7DDQ 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              568.914 
_entity.id                          8 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            SPHEROIDENE 
_entity.pdbx_number_of_molecules    15 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7DDQ 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7DDQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    34-meric 
_pdbx_struct_assembly.oligomeric_count      34 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB,AC,BC,CC,DC,EC,FC,GC,HC,IC,JC,KC,LC,MC,NC,OC,PC,QC,RC 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 8 JA N N 
? 8 MA N N 
? 8 QA N N 
? 8 RA N N 
? 8 WA N N 
? 8 CB N N 
? 8 DB N N 
? 8 HB N N 
? 8 IB N N 
? 8 PB N N 
? 8 TB N N 
? 8 FC N N 
? 8 LC N N 
? 8 NC N N 
? 8 RC N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 BA NE2 HIS 191 L HIS 191 1_555 DC FE FE . M FE 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? 
metalc ? metalc2 BA NE2 HIS 231 L HIS 231 1_555 DC FE FE . M FE 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.562 ? 
metalc ? metalc3 CA NE2 HIS 220 M HIS 220 1_555 DC FE FE . M FE 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? 
metalc ? metalc4 CA OE1 GLU 235 M GLU 235 1_555 DC FE FE . M FE 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.55 ? 
metalc ? metalc5 CA OE2 GLU 235 M GLU 235 1_555 DC FE FE . M FE 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.706 ? 
metalc ? metalc6 CA NE2 HIS 267 M HIS 267 1_555 DC FE FE . M FE 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.511 ? 
#
_chem_comp.formula           'C41 H60 O' 
_chem_comp.formula_weight    568.914 
_chem_comp.id                SPO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              SPHEROIDENE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CM1 O1 SPO sing 714 n n 
CM1 HM11 SPO sing 715 n n 
CM1 HM12 SPO sing 716 n n 
CM1 HM13 SPO sing 717 n n 
O1 C1 SPO sing 718 n n 
C1 C2 SPO sing 719 n n 
C1 C3 SPO sing 720 n n 
C1 C4 SPO sing 721 n n 
C2 H21A SPO sing 722 n n 
C2 H22A SPO sing 723 n n 
C2 H23 SPO sing 724 n n 
C3 H31 SPO sing 725 n n 
C3 H32A SPO sing 726 n n 
C3 H33 SPO sing 727 n n 
C4 C5 SPO sing 728 n n 
C4 H41 SPO sing 729 n n 
C4 H42 SPO sing 730 n n 
C5 C6 SPO doub 731 e n 
C5 H5 SPO sing 732 n n 
C6 C7 SPO sing 733 n n 
C6 H6 SPO sing 734 n n 
C7 C8 SPO sing 735 n n 
C7 C9 SPO doub 736 e n 
C8 H81 SPO sing 737 n n 
C8 H82 SPO sing 738 n n 
C8 H83 SPO sing 739 n n 
C9 C10 SPO sing 740 n n 
C9 H9 SPO sing 741 n n 
C10 C11 SPO doub 742 e n 
C10 H10 SPO sing 743 n n 
C11 C12 SPO sing 744 n n 
C11 H11 SPO sing 745 n n 
C12 C13 SPO sing 746 n n 
C12 C14 SPO doub 747 e n 
C13 H131 SPO sing 748 n n 
C13 H132 SPO sing 749 n n 
C13 H133 SPO sing 750 n n 
C14 C15 SPO sing 751 n n 
C14 H14 SPO sing 752 n n 
C15 C16 SPO doub 753 e n 
C15 H15 SPO sing 754 n n 
C16 C17 SPO sing 755 n n 
C16 H16 SPO sing 756 n n 
C17 C18 SPO sing 757 n n 
C17 C19 SPO doub 758 z n 
C18 H181 SPO sing 759 n n 
C18 H182 SPO sing 760 n n 
C18 H183 SPO sing 761 n n 
C19 C20 SPO sing 762 n n 
C19 H19 SPO sing 763 n n 
C20 C21 SPO doub 764 e n 
C20 H20 SPO sing 765 n n 
C21 C22 SPO sing 766 n n 
C21 H21 SPO sing 767 n n 
C22 C23 SPO doub 768 e n 
C22 H22 SPO sing 769 n n 
C23 C24 SPO sing 770 n n 
C23 C25 SPO sing 771 n n 
C24 H241 SPO sing 772 n n 
C24 H242 SPO sing 773 n n 
C24 H243 SPO sing 774 n n 
C25 C26 SPO doub 775 e n 
C25 H25 SPO sing 776 n n 
C26 C27 SPO sing 777 n n 
C26 H26 SPO sing 778 n n 
C27 C28 SPO doub 779 e n 
C27 H27 SPO sing 780 n n 
C28 C29 SPO sing 781 n n 
C28 C30 SPO sing 782 n n 
C29 H291 SPO sing 783 n n 
C29 H292 SPO sing 784 n n 
C29 H293 SPO sing 785 n n 
C30 C31 SPO sing 786 n n 
C30 H301 SPO sing 787 n n 
C30 H302 SPO sing 788 n n 
C31 C32 SPO sing 789 n n 
C31 H311 SPO sing 790 n n 
C31 H312 SPO sing 791 n n 
C32 C33 SPO doub 792 e n 
C32 H32 SPO sing 793 n n 
C33 C34 SPO sing 794 n n 
C33 C35 SPO sing 795 n n 
C34 H341 SPO sing 796 n n 
C34 H342 SPO sing 797 n n 
C34 H343 SPO sing 798 n n 
C35 C36 SPO sing 799 n n 
C35 H351 SPO sing 800 n n 
C35 H352 SPO sing 801 n n 
C36 C37 SPO sing 802 n n 
C36 H361 SPO sing 803 n n 
C36 H362 SPO sing 804 n n 
C37 C38 SPO doub 805 n n 
C37 H37 SPO sing 806 n n 
C38 C39 SPO sing 807 n n 
C38 C40 SPO sing 808 n n 
C39 H391 SPO sing 809 n n 
C39 H392 SPO sing 810 n n 
C39 H393 SPO sing 811 n n 
C40 H401 SPO sing 812 n n 
C40 H402 SPO sing 813 n n 
C40 H403 SPO sing 814 n n 
#
_atom_sites.entry_id                     7DDQ 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
IA 7 BCL o 1 100 100 BCL BCL . 
JA 8 SPO N 1 201 201 SPO SPO . 
KA 7 BCL N 1 202 98 BCL BCL . 
LA 7 BCL t 1 101 100 BCL BCL . 
MA 8 SPO t 1 102 201 SPO SPO . 
NA 7 BCL t 1 103 98 BCL BCL . 
OA 7 BCL S 1 101 98 BCL BCL . 
PA 7 BCL r 1 101 100 BCL BCL . 
QA 8 SPO r 1 102 201 SPO SPO . 
RA 8 SPO r 1 103 199 SPO SPO . 
SA 7 BCL O 1 101 98 BCL BCL . 
TA 7 BCL a 1 101 100 BCL BCL . 
UA 9 U10 a 1 102 301 U10 U10 . 
VA 7 BCL e 1 100 100 BCL BCL . 
WA 8 SPO D 1 201 201 SPO SPO . 
XA 7 BCL D 1 202 98 BCL BCL . 
YA 7 BCL b 1 101 100 BCL BCL . 
ZA 7 BCL b 1 102 98 BCL BCL . 
AB 7 BCL A 1 101 98 BCL BCL . 
BB 7 BCL k 1 101 100 BCL BCL . 
CB 8 SPO k 1 102 201 SPO SPO . 
DB 8 SPO E 1 201 201 SPO SPO . 
EB 7 BCL E 1 202 98 BCL BCL . 
FB 7 BCL u 1 101 100 BCL BCL . 
GB 7 BCL u 1 102 98 BCL BCL . 
HB 8 SPO X 1 201 201 SPO SPO . 
IB 8 SPO s 1 201 201 SPO SPO . 
JB 7 BCL s 1 202 100 BCL BCL . 
KB 7 BCL R 1 101 98 BCL BCL . 
LB 7 BCL n 1 100 100 BCL BCL . 
MB 7 BCL K 1 101 98 BCL BCL . 
NB 7 BCL i 1 100 100 BCL BCL . 
OB 7 BCL G 1 101 98 BCL BCL . 
PB 8 SPO j 1 301 301 SPO SPO . 
QB 7 BCL j 1 302 100 BCL BCL . 
RB 7 BCL j 1 303 98 BCL BCL . 
SB 7 BCL I 1 101 98 BCL BCL . 
TB 8 SPO I 1 102 199 SPO SPO . 
UB 7 BCL L 1 301 852 BCL BCL . 
VB 10 BPH L 1 302 856 BPH BPH . 
WB 9 U10 L 1 303 902 U10 U10 . 
XB 9 U10 L 1 304 1002 U10 U10 . 
YB 9 U10 L 1 305 1102 U10 U10 . 
ZB 10 BPH L 1 306 2302 BPH BPH . 
AC 7 BCL M 1 401 854 BCL BCL . 
BC 7 BCL M 1 402 853 BCL BCL . 
CC 10 BPH M 1 403 855 BPH BPH . 
DC 11 FE M 1 404 857 FE FE . 
EC 9 U10 M 1 405 858 U10 U10 . 
FC 8 SPO M 1 406 2102 SPO SPO . 
GC 7 BCL M 1 407 2202 BCL BCL . 
HC 9 U10 M 1 408 2402 U10 U10 . 
IC 12 3PE H 1 301 2502 3PE PEH . 
JC 12 3PE H 1 302 301 3PE PEH . 
KC 7 BCL g 1 101 100 BCL BCL . 
LC 8 SPO g 1 102 201 SPO SPO . 
MC 7 BCL F 1 101 100 BCL BCL . 
NC 8 SPO F 1 102 201 SPO SPO . 
OC 7 BCL F 1 103 98 BCL BCL . 
PC 7 BCL d 1 101 100 BCL BCL . 
QC 12 3PE d 1 102 301 3PE PEH . 
RC 8 SPO B 1 101 199 SPO SPO . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CM1 SPO . . . CB 8 100.314 99.898 66.647 1 19.43 ? CM1 SPO 102 k 1 
HETATM 2 O O1 SPO . . . CB 8 100.146 100.639 67.832 1 19.43 ? O1 SPO 102 k 1 
HETATM 3 C C1 SPO . . . CB 8 98.81 100.989 68.1 1 19.43 ? C1 SPO 102 k 1 
HETATM 4 C C2 SPO . . . CB 8 99.325 102.302 67.47 1 19.43 ? C2 SPO 102 k 1 
HETATM 5 C C3 SPO . . . CB 8 99.188 100.372 69.471 1 19.43 ? C3 SPO 102 k 1 
HETATM 6 C C4 SPO . . . CB 8 98.245 102.033 69.098 1 19.43 ? C4 SPO 102 k 1 
HETATM 7 C C5 SPO . . . CB 8 96.706 102.108 68.948 1 19.43 ? C5 SPO 102 k 1 
HETATM 8 C C6 SPO . . . CB 8 95.954 101.26 68.236 1 19.43 ? C6 SPO 102 k 1 
HETATM 9 C C7 SPO . . . CB 8 94.452 101.614 68.287 1 19.43 ? C7 SPO 102 k 1 
HETATM 10 C C8 SPO . . . CB 8 93.563 101.114 69.44 1 19.43 ? C8 SPO 102 k 1 
HETATM 11 C C9 SPO . . . CB 8 93.992 102.392 67.306 1 19.43 ? C9 SPO 102 k 1 
HETATM 12 C C10 SPO . . . CB 8 92.551 102.92 67.09 1 19.43 ? C10 SPO 102 k 1 
HETATM 13 C C11 SPO . . . CB 8 91.933 103.699 67.968 1 19.43 ? C11 SPO 102 k 1 
HETATM 14 C C12 SPO . . . CB 8 90.516 104.247 67.677 1 19.43 ? C12 SPO 102 k 1 
HETATM 15 C C13 SPO . . . CB 8 89.257 103.75 68.418 1 19.43 ? C13 SPO 102 k 1 
HETATM 16 C C14 SPO . . . CB 8 90.42 105.211 66.753 1 19.43 ? C14 SPO 102 k 1 
HETATM 17 C C15 SPO . . . CB 8 89.063 105.872 66.423 1 19.43 ? C15 SPO 102 k 1 
HETATM 18 C C16 SPO . . . CB 8 89.148 107.206 66.333 1 19.43 ? C16 SPO 102 k 1 
HETATM 19 C C17 SPO . . . CB 8 87.978 108.18 66.063 1 19.43 ? C17 SPO 102 k 1 
HETATM 20 C C18 SPO . . . CB 8 86.562 107.833 66.547 1 19.43 ? C18 SPO 102 k 1 
HETATM 21 C C19 SPO . . . CB 8 88.192 109.351 65.452 1 19.43 ? C19 SPO 102 k 1 
HETATM 22 C C20 SPO . . . CB 8 86.986 110.293 65.282 1 19.43 ? C20 SPO 102 k 1 
HETATM 23 C C21 SPO . . . CB 8 87.191 111.611 65.352 1 19.43 ? C21 SPO 102 k 1 
HETATM 24 C C22 SPO . . . CB 8 86.005 112.584 65.239 1 19.43 ? C22 SPO 102 k 1 
HETATM 25 C C23 SPO . . . CB 8 86.179 113.877 65.547 1 19.43 ? C23 SPO 102 k 1 
HETATM 26 C C24 SPO . . . CB 8 87.58 114.343 65.968 1 19.43 ? C24 SPO 102 k 1 
HETATM 27 C C25 SPO . . . CB 8 84.959 114.835 65.481 1 19.43 ? C25 SPO 102 k 1 
HETATM 28 C C26 SPO . . . CB 8 84.951 116.142 65.159 1 19.43 ? C26 SPO 102 k 1 
HETATM 29 C C27 SPO . . . CB 8 86.188 116.964 64.725 1 19.43 ? C27 SPO 102 k 1 
HETATM 30 C C28 SPO . . . CB 8 86.307 118.268 65.049 1 19.43 ? C28 SPO 102 k 1 
HETATM 31 C C29 SPO . . . CB 8 87.555 119.051 64.591 1 19.43 ? C29 SPO 102 k 1 
HETATM 32 C C30 SPO . . . CB 8 85.203 118.974 65.888 1 19.43 ? C30 SPO 102 k 1 
HETATM 33 C C31 SPO . . . CB 8 84.024 119.407 64.967 1 19.43 ? C31 SPO 102 k 1 
HETATM 34 C C32 SPO . . . CB 8 82.715 118.977 65.659 1 19.43 ? C32 SPO 102 k 1 
HETATM 35 C C33 SPO . . . CB 8 81.851 119.925 66.063 1 19.43 ? C33 SPO 102 k 1 
HETATM 36 C C34 SPO . . . CB 8 82.188 121.412 65.815 1 19.43 ? C34 SPO 102 k 1 
HETATM 37 C C35 SPO . . . CB 8 80.523 119.528 66.765 1 19.43 ? C35 SPO 102 k 1 
HETATM 38 C C36 SPO . . . CB 8 80.262 120.485 67.955 1 19.43 ? C36 SPO 102 k 1 
HETATM 39 C C37 SPO . . . CB 8 78.738 120.647 68.15 1 19.43 ? C37 SPO 102 k 1 
HETATM 40 C C38 SPO . . . CB 8 78.096 121.708 67.655 1 19.43 ? C38 SPO 102 k 1 
HETATM 41 C C39 SPO . . . CB 8 78.882 122.785 66.883 1 19.43 ? C39 SPO 102 k 1 
HETATM 42 C C40 SPO . . . CB 8 76.572 121.854 67.857 1 19.43 ? C40 SPO 102 k 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    38 
_model_server_stats.query_time_ms           331 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           42 
#