data_7DDQ # _model_server_result.job_id 93S5oQLsLX8K4m4HprvFgQ _model_server_result.datetime_utc '2024-10-19 22:29:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ddq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"XB","auth_seq_id":304}' # _entry.id 7DDQ # _exptl.entry_id 7DDQ _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 863.343 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description UBIQUINONE-10 _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7DDQ _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7DDQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 34-meric _pdbx_struct_assembly.oligomeric_count 34 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB,AC,BC,CC,DC,EC,FC,GC,HC,IC,JC,KC,LC,MC,NC,OC,PC,QC,RC _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 9 UA N N ? 9 WB N N ? 9 XB N N ? 9 YB N N ? 9 EC N N ? 9 HC N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 BA NE2 HIS 191 L HIS 191 1_555 DC FE FE . M FE 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc2 BA NE2 HIS 231 L HIS 231 1_555 DC FE FE . M FE 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.562 ? metalc ? metalc3 CA NE2 HIS 220 M HIS 220 1_555 DC FE FE . M FE 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? metalc ? metalc4 CA OE1 GLU 235 M GLU 235 1_555 DC FE FE . M FE 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.55 ? metalc ? metalc5 CA OE2 GLU 235 M GLU 235 1_555 DC FE FE . M FE 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.706 ? metalc ? metalc6 CA NE2 HIS 267 M HIS 267 1_555 DC FE FE . M FE 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.511 ? # _chem_comp.formula 'C59 H90 O4' _chem_comp.formula_weight 863.343 _chem_comp.id U10 _chem_comp.mon_nstd_flag . _chem_comp.name UBIQUINONE-10 _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Coenzyme Q10' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 U10 sing 883 n n C1 C6 U10 doub 884 n n C1 C1M U10 sing 885 n n C2 C3 U10 sing 886 n n C2 O2 U10 doub 887 n n C3 C4 U10 doub 888 n n C3 O3 U10 sing 889 n n C4 C5 U10 sing 890 n n C4 O4 U10 sing 891 n n C5 C6 U10 sing 892 n n C5 O5 U10 doub 893 n n C6 C7 U10 sing 894 n n C1M H1M1 U10 sing 895 n n C1M H1M2 U10 sing 896 n n C1M H1M3 U10 sing 897 n n C3M O3 U10 sing 898 n n C3M H3M1 U10 sing 899 n n C3M H3M2 U10 sing 900 n n C3M H3M3 U10 sing 901 n n C4M O4 U10 sing 902 n n C4M H4M1 U10 sing 903 n n C4M H4M2 U10 sing 904 n n C4M H4M3 U10 sing 905 n n C7 C8 U10 sing 906 n n C7 H71 U10 sing 907 n n C7 H72 U10 sing 908 n n C8 C9 U10 doub 909 e n C8 H8 U10 sing 910 n n C9 C10 U10 sing 911 n n C9 C11 U10 sing 912 n n C10 H101 U10 sing 913 n n C10 H102 U10 sing 914 n n C10 H103 U10 sing 915 n n C11 C12 U10 sing 916 n n C11 H111 U10 sing 917 n n C11 H112 U10 sing 918 n n C12 C13 U10 sing 919 n n C12 H121 U10 sing 920 n n C12 H122 U10 sing 921 n n C13 C14 U10 doub 922 e n C13 H13 U10 sing 923 n n C14 C15 U10 sing 924 n n C14 C16 U10 sing 925 n n C15 H151 U10 sing 926 n n C15 H152 U10 sing 927 n n C15 H153 U10 sing 928 n n C16 C17 U10 sing 929 n n C16 H161 U10 sing 930 n n C16 H162 U10 sing 931 n n C17 C18 U10 sing 932 n n C17 H171 U10 sing 933 n n C17 H172 U10 sing 934 n n C18 C19 U10 doub 935 e n C18 H18 U10 sing 936 n n C19 C20 U10 sing 937 n n C19 C21 U10 sing 938 n n C20 H201 U10 sing 939 n n C20 H202 U10 sing 940 n n C20 H203 U10 sing 941 n n C21 C22 U10 sing 942 n n C21 H211 U10 sing 943 n n C21 H212 U10 sing 944 n n C22 C23 U10 sing 945 n n C22 H221 U10 sing 946 n n C22 H222 U10 sing 947 n n C23 C24 U10 doub 948 e n C23 H23 U10 sing 949 n n C24 C25 U10 sing 950 n n C24 C26 U10 sing 951 n n C25 H251 U10 sing 952 n n C25 H252 U10 sing 953 n n C25 H253 U10 sing 954 n n C26 C27 U10 sing 955 n n C26 H261 U10 sing 956 n n C26 H262 U10 sing 957 n n C27 C28 U10 sing 958 n n C27 H271 U10 sing 959 n n C27 H272 U10 sing 960 n n C28 C29 U10 doub 961 e n C28 H28 U10 sing 962 n n C29 C30 U10 sing 963 n n C29 C31 U10 sing 964 n n C30 H301 U10 sing 965 n n C30 H302 U10 sing 966 n n C30 H303 U10 sing 967 n n C31 C32 U10 sing 968 n n C31 H311 U10 sing 969 n n C31 H312 U10 sing 970 n n C32 C33 U10 sing 971 n n C32 H321 U10 sing 972 n n C32 H322 U10 sing 973 n n C33 C34 U10 doub 974 e n C33 H33 U10 sing 975 n n C34 C35 U10 sing 976 n n C34 C36 U10 sing 977 n n C35 H351 U10 sing 978 n n C35 H352 U10 sing 979 n n C35 H353 U10 sing 980 n n C36 C37 U10 sing 981 n n C36 H361 U10 sing 982 n n C36 H362 U10 sing 983 n n C37 C38 U10 sing 984 n n C37 H371 U10 sing 985 n n C37 H372 U10 sing 986 n n C38 C39 U10 doub 987 e n C38 H38 U10 sing 988 n n C39 C40 U10 sing 989 n n C39 C41 U10 sing 990 n n C40 H401 U10 sing 991 n n C40 H402 U10 sing 992 n n C40 H403 U10 sing 993 n n C41 C42 U10 sing 994 n n C41 H411 U10 sing 995 n n C41 H412 U10 sing 996 n n C42 C43 U10 sing 997 n n C42 H421 U10 sing 998 n n C42 H422 U10 sing 999 n n C43 C44 U10 doub 1000 e n C43 H43 U10 sing 1001 n n C44 C45 U10 sing 1002 n n C44 C46 U10 sing 1003 n n C45 H451 U10 sing 1004 n n C45 H452 U10 sing 1005 n n C45 H453 U10 sing 1006 n n C46 C47 U10 sing 1007 n n C46 H461 U10 sing 1008 n n C46 H462 U10 sing 1009 n n C47 C48 U10 sing 1010 n n C47 H471 U10 sing 1011 n n C47 H472 U10 sing 1012 n n C48 C49 U10 doub 1013 e n C48 H48 U10 sing 1014 n n C49 C50 U10 sing 1015 n n C49 C51 U10 sing 1016 n n C50 H501 U10 sing 1017 n n C50 H502 U10 sing 1018 n n C50 H503 U10 sing 1019 n n C51 C52 U10 sing 1020 n n C51 H511 U10 sing 1021 n n C51 H512 U10 sing 1022 n n C52 C53 U10 sing 1023 n n C52 H521 U10 sing 1024 n n C52 H522 U10 sing 1025 n n C53 C54 U10 doub 1026 n n C53 H53 U10 sing 1027 n n C54 C55 U10 sing 1028 n n C54 C56 U10 sing 1029 n n C55 H551 U10 sing 1030 n n C55 H552 U10 sing 1031 n n C55 H553 U10 sing 1032 n n C56 H561 U10 sing 1033 n n C56 H562 U10 sing 1034 n n C56 H563 U10 sing 1035 n n # _atom_sites.entry_id 7DDQ _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code IA 7 BCL o 1 100 100 BCL BCL . JA 8 SPO N 1 201 201 SPO SPO . KA 7 BCL N 1 202 98 BCL BCL . LA 7 BCL t 1 101 100 BCL BCL . MA 8 SPO t 1 102 201 SPO SPO . NA 7 BCL t 1 103 98 BCL BCL . OA 7 BCL S 1 101 98 BCL BCL . PA 7 BCL r 1 101 100 BCL BCL . QA 8 SPO r 1 102 201 SPO SPO . RA 8 SPO r 1 103 199 SPO SPO . SA 7 BCL O 1 101 98 BCL BCL . TA 7 BCL a 1 101 100 BCL BCL . UA 9 U10 a 1 102 301 U10 U10 . VA 7 BCL e 1 100 100 BCL BCL . WA 8 SPO D 1 201 201 SPO SPO . XA 7 BCL D 1 202 98 BCL BCL . YA 7 BCL b 1 101 100 BCL BCL . ZA 7 BCL b 1 102 98 BCL BCL . AB 7 BCL A 1 101 98 BCL BCL . BB 7 BCL k 1 101 100 BCL BCL . CB 8 SPO k 1 102 201 SPO SPO . DB 8 SPO E 1 201 201 SPO SPO . EB 7 BCL E 1 202 98 BCL BCL . FB 7 BCL u 1 101 100 BCL BCL . GB 7 BCL u 1 102 98 BCL BCL . HB 8 SPO X 1 201 201 SPO SPO . IB 8 SPO s 1 201 201 SPO SPO . JB 7 BCL s 1 202 100 BCL BCL . KB 7 BCL R 1 101 98 BCL BCL . LB 7 BCL n 1 100 100 BCL BCL . MB 7 BCL K 1 101 98 BCL BCL . NB 7 BCL i 1 100 100 BCL BCL . OB 7 BCL G 1 101 98 BCL BCL . PB 8 SPO j 1 301 301 SPO SPO . QB 7 BCL j 1 302 100 BCL BCL . RB 7 BCL j 1 303 98 BCL BCL . SB 7 BCL I 1 101 98 BCL BCL . TB 8 SPO I 1 102 199 SPO SPO . UB 7 BCL L 1 301 852 BCL BCL . VB 10 BPH L 1 302 856 BPH BPH . WB 9 U10 L 1 303 902 U10 U10 . XB 9 U10 L 1 304 1002 U10 U10 . YB 9 U10 L 1 305 1102 U10 U10 . ZB 10 BPH L 1 306 2302 BPH BPH . AC 7 BCL M 1 401 854 BCL BCL . BC 7 BCL M 1 402 853 BCL BCL . CC 10 BPH M 1 403 855 BPH BPH . DC 11 FE M 1 404 857 FE FE . EC 9 U10 M 1 405 858 U10 U10 . FC 8 SPO M 1 406 2102 SPO SPO . GC 7 BCL M 1 407 2202 BCL BCL . HC 9 U10 M 1 408 2402 U10 U10 . IC 12 3PE H 1 301 2502 3PE PEH . JC 12 3PE H 1 302 301 3PE PEH . KC 7 BCL g 1 101 100 BCL BCL . LC 8 SPO g 1 102 201 SPO SPO . MC 7 BCL F 1 101 100 BCL BCL . NC 8 SPO F 1 102 201 SPO SPO . OC 7 BCL F 1 103 98 BCL BCL . PC 7 BCL d 1 101 100 BCL BCL . QC 12 3PE d 1 102 301 3PE PEH . RC 8 SPO B 1 101 199 SPO SPO . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 U10 . . . XB 9 104.895 95.795 102.285 1 16.76 ? C1 U10 304 L 1 HETATM 2 C C2 U10 . . . XB 9 104.871 95.835 100.903 1 16.76 ? C2 U10 304 L 1 HETATM 3 C C3 U10 . . . XB 9 104.319 96.939 100.248 1 16.76 ? C3 U10 304 L 1 HETATM 4 C C4 U10 . . . XB 9 103.781 97.992 100.993 1 16.76 ? C4 U10 304 L 1 HETATM 5 C C5 U10 . . . XB 9 103.813 97.946 102.376 1 16.76 ? C5 U10 304 L 1 HETATM 6 C C6 U10 . . . XB 9 104.374 96.849 103.019 1 16.76 ? C6 U10 304 L 1 HETATM 7 C C1M U10 . . . XB 9 105.5 94.613 102.984 1 16.76 ? C1M U10 304 L 1 HETATM 8 C C3M U10 . . . XB 9 103.857 96.429 98.063 1 16.76 ? C3M U10 304 L 1 HETATM 9 C C4M U10 . . . XB 9 102.377 99.283 99.663 1 16.76 ? C4M U10 304 L 1 HETATM 10 C C7 U10 . . . XB 9 104.58 96.872 104.506 1 16.76 ? C7 U10 304 L 1 HETATM 11 C C8 U10 . . . XB 9 103.344 96.371 105.203 1 16.76 ? C8 U10 304 L 1 HETATM 12 C C9 U10 . . . XB 9 103.269 94.992 105.699 1 16.76 ? C9 U10 304 L 1 HETATM 13 C C10 U10 . . . XB 9 102.485 93.953 104.955 1 16.76 ? C10 U10 304 L 1 HETATM 14 C C11 U10 . . . XB 9 103.964 94.62 106.983 1 16.76 ? C11 U10 304 L 1 HETATM 15 C C12 U10 . . . XB 9 104.927 93.474 106.714 1 16.76 ? C12 U10 304 L 1 HETATM 16 C C13 U10 . . . XB 9 105.473 92.958 108.025 1 16.76 ? C13 U10 304 L 1 HETATM 17 C C14 U10 . . . XB 9 105.223 91.576 108.468 1 16.76 ? C14 U10 304 L 1 HETATM 18 C C15 U10 . . . XB 9 104.274 90.704 107.707 1 16.76 ? C15 U10 304 L 1 HETATM 19 C C16 U10 . . . XB 9 105.911 91.05 109.704 1 16.76 ? C16 U10 304 L 1 HETATM 20 C C17 U10 . . . XB 9 106.611 89.724 109.446 1 16.76 ? C17 U10 304 L 1 HETATM 21 C C18 U10 . . . XB 9 108.097 89.932 109.325 1 16.76 ? C18 U10 304 L 1 HETATM 22 C C19 U10 . . . XB 9 108.968 89.517 110.426 1 16.76 ? C19 U10 304 L 1 HETATM 23 C C20 U10 . . . XB 9 108.418 89.562 111.818 1 16.76 ? C20 U10 304 L 1 HETATM 24 C C21 U10 . . . XB 9 110.392 89.068 110.188 1 16.76 ? C21 U10 304 L 1 HETATM 25 C C22 U10 . . . XB 9 110.72 87.987 111.208 1 16.76 ? C22 U10 304 L 1 HETATM 26 C C23 U10 . . . XB 9 112.115 87.447 111.023 1 16.76 ? C23 U10 304 L 1 HETATM 27 C C24 U10 . . . XB 9 112.285 86.001 110.827 1 16.76 ? C24 U10 304 L 1 HETATM 28 C C25 U10 . . . XB 9 111.258 85.271 110.008 1 16.76 ? C25 U10 304 L 1 HETATM 29 C C26 U10 . . . XB 9 113.472 85.276 111.425 1 16.76 ? C26 U10 304 L 1 HETATM 30 C C27 U10 . . . XB 9 113.605 83.857 110.879 1 16.76 ? C27 U10 304 L 1 HETATM 31 C C28 U10 . . . XB 9 112.88 82.885 111.774 1 16.76 ? C28 U10 304 L 1 HETATM 32 C C29 U10 . . . XB 9 112.666 81.493 111.346 1 16.76 ? C29 U10 304 L 1 HETATM 33 C C30 U10 . . . XB 9 113.507 80.389 111.912 1 16.76 ? C30 U10 304 L 1 HETATM 34 C C31 U10 . . . XB 9 111.578 81.167 110.352 1 16.76 ? C31 U10 304 L 1 HETATM 35 O O2 U10 . . . XB 9 105.375 94.902 100.282 1 16.76 ? O2 U10 304 L 1 HETATM 36 O O3 U10 . . . XB 9 104.574 97.122 99.06 1 16.76 ? O3 U10 304 L 1 HETATM 37 O O4 U10 . . . XB 9 103.518 99.078 100.472 1 16.76 ? O4 U10 304 L 1 HETATM 38 O O5 U10 . . . XB 9 103.098 98.727 103.004 1 16.76 ? O5 U10 304 L 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 261 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 38 #