data_7DDT
#
_model_server_result.job_id            9PsLPEYCj9I70YDkMiklaw 
_model_server_result.datetime_utc      '2024-10-19 14:35:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7ddt 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":201}' 
#
_entry.id    7DDT 
#
_exptl.entry_id    7DDT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            7DDT 
_cell.length_a            115.36 
_cell.length_b            115.36 
_cell.length_c            35 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7DDT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    'P 31 2"' 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 94 A HIS 93 1_555 B FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
metalc ? metalc2 B FE HEM . A HEM 201 1_555 C N3 IMD . A IMD 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 116 n n 
CHA C4D HEM doub 117 n n 
CHA HHA HEM sing 118 n n 
CHB C4A HEM sing 119 n n 
CHB C1B HEM doub 120 n n 
CHB HHB HEM sing 121 n n 
CHC C4B HEM sing 122 n n 
CHC C1C HEM doub 123 n n 
CHC HHC HEM sing 124 n n 
CHD C4C HEM doub 125 n n 
CHD C1D HEM sing 126 n n 
CHD HHD HEM sing 127 n n 
C1A C2A HEM doub 128 n y 
C1A NA HEM sing 129 n y 
C2A C3A HEM sing 130 n y 
C2A CAA HEM sing 131 n n 
C3A C4A HEM doub 132 n y 
C3A CMA HEM sing 133 n n 
C4A NA HEM sing 134 n y 
CMA HMA HEM sing 135 n n 
CMA HMAA HEM sing 136 n n 
CMA HMAB HEM sing 137 n n 
CAA CBA HEM sing 138 n n 
CAA HAA HEM sing 139 n n 
CAA HAAA HEM sing 140 n n 
CBA CGA HEM sing 141 n n 
CBA HBA HEM sing 142 n n 
CBA HBAA HEM sing 143 n n 
CGA O1A HEM doub 144 n n 
CGA O2A HEM sing 145 n n 
C1B C2B HEM sing 146 n n 
C1B NB HEM sing 147 n n 
C2B C3B HEM doub 148 n n 
C2B CMB HEM sing 149 n n 
C3B C4B HEM sing 150 n n 
C3B CAB HEM sing 151 n n 
C4B NB HEM doub 152 n n 
CMB HMB HEM sing 153 n n 
CMB HMBA HEM sing 154 n n 
CMB HMBB HEM sing 155 n n 
CAB CBB HEM doub 156 n n 
CAB HAB HEM sing 157 n n 
CBB HBB HEM sing 158 n n 
CBB HBBA HEM sing 159 n n 
C1C C2C HEM sing 160 n y 
C1C NC HEM sing 161 n y 
C2C C3C HEM doub 162 n y 
C2C CMC HEM sing 163 n n 
C3C C4C HEM sing 164 n y 
C3C CAC HEM sing 165 n n 
C4C NC HEM sing 166 n y 
CMC HMC HEM sing 167 n n 
CMC HMCA HEM sing 168 n n 
CMC HMCB HEM sing 169 n n 
CAC CBC HEM doub 170 n n 
CAC HAC HEM sing 171 n n 
CBC HBC HEM sing 172 n n 
CBC HBCA HEM sing 173 n n 
C1D C2D HEM sing 174 n n 
C1D ND HEM doub 175 n n 
C2D C3D HEM doub 176 n n 
C2D CMD HEM sing 177 n n 
C3D C4D HEM sing 178 n n 
C3D CAD HEM sing 179 n n 
C4D ND HEM sing 180 n n 
CMD HMD HEM sing 181 n n 
CMD HMDA HEM sing 182 n n 
CMD HMDB HEM sing 183 n n 
CAD CBD HEM sing 184 n n 
CAD HAD HEM sing 185 n n 
CAD HADA HEM sing 186 n n 
CBD CGD HEM sing 187 n n 
CBD HBD HEM sing 188 n n 
CBD HBDA HEM sing 189 n n 
CGD O1D HEM doub 190 n n 
CGD O2D HEM sing 191 n n 
O2A H2A HEM sing 192 n n 
O2D H2D HEM sing 193 n n 
FE NA HEM sing 194 n n 
FE NB HEM sing 195 n n 
FE NC HEM sing 196 n n 
FE ND HEM sing 197 n n 
#
_atom_sites.entry_id                     7DDT 
_atom_sites.fract_transf_matrix[1][1]    0.008669 
_atom_sites.fract_transf_matrix[1][2]    0.005005 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01001 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.028571 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEM A 1 201 154 HEM HEM . 
C 3 IMD A 1 202 155 IMD IMD . 
D 4 SO4 A 1 203 1 SO4 SO4 . 
E 4 SO4 A 1 204 2 SO4 SO4 . 
F 4 SO4 A 1 205 3 SO4 SO4 . 
G 4 SO4 A 1 206 4 SO4 SO4 . 
H 4 SO4 A 1 207 5 SO4 SO4 . 
I 4 SO4 A 1 208 6 SO4 SO4 . 
J 4 SO4 A 1 209 7 SO4 SO4 . 
K 4 SO4 A 1 210 9 SO4 SO4 . 
L 4 SO4 A 1 211 10 SO4 SO4 . 
M 5 HOH A 1 301 47 HOH HOH . 
M 5 HOH A 2 302 56 HOH HOH . 
M 5 HOH A 3 303 72 HOH HOH . 
M 5 HOH A 4 304 46 HOH HOH . 
M 5 HOH A 5 305 74 HOH HOH . 
M 5 HOH A 6 306 65 HOH HOH . 
M 5 HOH A 7 307 29 HOH HOH . 
M 5 HOH A 8 308 55 HOH HOH . 
M 5 HOH A 9 309 73 HOH HOH . 
M 5 HOH A 10 310 35 HOH HOH . 
M 5 HOH A 11 311 60 HOH HOH . 
M 5 HOH A 12 312 66 HOH HOH . 
M 5 HOH A 13 313 54 HOH HOH . 
M 5 HOH A 14 314 71 HOH HOH . 
M 5 HOH A 15 315 41 HOH HOH . 
M 5 HOH A 16 316 67 HOH HOH . 
M 5 HOH A 17 317 14 HOH HOH . 
M 5 HOH A 18 318 68 HOH HOH . 
M 5 HOH A 19 319 62 HOH HOH . 
M 5 HOH A 20 320 5 HOH HOH . 
M 5 HOH A 21 321 52 HOH HOH . 
M 5 HOH A 22 322 63 HOH HOH . 
M 5 HOH A 23 323 40 HOH HOH . 
M 5 HOH A 24 324 37 HOH HOH . 
M 5 HOH A 25 325 28 HOH HOH . 
M 5 HOH A 26 326 70 HOH HOH . 
M 5 HOH A 27 327 69 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . B 2 -46.986 32.118 5.857 1 22.07 ? CHA HEM 201 A 1 
HETATM 2 C CHB HEM . . . B 2 -45.145 35.113 2.658 1 28.98 ? CHB HEM 201 A 1 
HETATM 3 C CHC HEM . . . B 2 -43.982 38.23 6.176 1 15.77 ? CHC HEM 201 A 1 
HETATM 4 C CHD HEM . . . B 2 -45.262 34.881 9.339 1 11.19 ? CHD HEM 201 A 1 
HETATM 5 C C1A HEM . . . B 2 -46.628 32.658 4.66 1 19.83 ? C1A HEM 201 A 1 
HETATM 6 C C2A HEM . . . B 2 -46.851 32.074 3.352 1 20.54 ? C2A HEM 201 A 1 
HETATM 7 C C3A HEM . . . B 2 -46.322 32.915 2.458 1 23.59 ? C3A HEM 201 A 1 
HETATM 8 C C4A HEM . . . B 2 -45.771 34.034 3.193 1 19.76 ? C4A HEM 201 A 1 
HETATM 9 C CMA HEM . . . B 2 -46.318 32.752 0.908 1 24.24 ? CMA HEM 201 A 1 
HETATM 10 C CAA HEM . . . B 2 -47.581 30.746 3.045 1 15.71 ? CAA HEM 201 A 1 
HETATM 11 C CBA HEM . . . B 2 -48.761 30.443 4.008 1 42.05 ? CBA HEM 201 A 1 
HETATM 12 C CGA HEM . . . B 2 -50.014 31.323 3.922 1 34.47 ? CGA HEM 201 A 1 
HETATM 13 O O1A HEM . . . B 2 -49.971 32.411 3.291 1 27.7 ? O1A HEM 201 A 1 
HETATM 14 O O2A HEM . . . B 2 -51.082 30.952 4.495 1 22.41 ? O2A HEM 201 A 1 
HETATM 15 C C1B HEM . . . B 2 -44.689 36.214 3.347 1 26.39 ? C1B HEM 201 A 1 
HETATM 16 C C2B HEM . . . B 2 -44.114 37.37 2.705 1 10.48 ? C2B HEM 201 A 1 
HETATM 17 C C3B HEM . . . B 2 -43.797 38.243 3.638 1 10.8 ? C3B HEM 201 A 1 
HETATM 18 C C4B HEM . . . B 2 -44.135 37.66 4.929 1 22.89 ? C4B HEM 201 A 1 
HETATM 19 C CMB HEM . . . B 2 -43.962 37.517 1.177 1 23.06 ? CMB HEM 201 A 1 
HETATM 20 C CAB HEM . . . B 2 -43.131 39.606 3.397 1 17.39 ? CAB HEM 201 A 1 
HETATM 21 C CBB HEM . . . B 2 -42.193 39.725 2.437 1 21.58 ? CBB HEM 201 A 1 
HETATM 22 C C1C HEM . . . B 2 -44.165 37.541 7.351 1 19.35 ? C1C HEM 201 A 1 
HETATM 23 C C2C HEM . . . B 2 -43.684 37.93 8.685 1 27.21 ? C2C HEM 201 A 1 
HETATM 24 C C3C HEM . . . B 2 -44.068 36.971 9.534 1 20.9 ? C3C HEM 201 A 1 
HETATM 25 C C4C HEM . . . B 2 -44.754 35.982 8.766 1 10.13 ? C4C HEM 201 A 1 
HETATM 26 C CMC HEM . . . B 2 -42.888 39.213 9.041 1 19.09 ? CMC HEM 201 A 1 
HETATM 27 C CAC HEM . . . B 2 -43.857 36.822 11.059 1 14.53 ? CAC HEM 201 A 1 
HETATM 28 C CBC HEM . . . B 2 -43.148 37.713 11.74 1 13.04 ? CBC HEM 201 A 1 
HETATM 29 C C1D HEM . . . B 2 -45.814 33.857 8.651 1 16.68 ? C1D HEM 201 A 1 
HETATM 30 C C2D HEM . . . B 2 -46.265 32.658 9.29 1 9.99 ? C2D HEM 201 A 1 
HETATM 31 C C3D HEM . . . B 2 -46.765 31.867 8.361 1 9.9 ? C3D HEM 201 A 1 
HETATM 32 C C4D HEM . . . B 2 -46.608 32.561 7.087 1 24.3 ? C4D HEM 201 A 1 
HETATM 33 C CMD HEM . . . B 2 -46.143 32.418 10.806 1 20.86 ? CMD HEM 201 A 1 
HETATM 34 C CAD HEM . . . B 2 -47.319 30.462 8.625 1 17.22 ? CAD HEM 201 A 1 
HETATM 35 C CBD HEM . . . B 2 -46.128 29.518 8.408 1 19.8 ? CBD HEM 201 A 1 
HETATM 36 C CGD HEM . . . B 2 -46.48 28.173 8.977 1 43.51 ? CGD HEM 201 A 1 
HETATM 37 O O1D HEM . . . B 2 -45.629 27.228 8.988 1 40.71 ? O1D HEM 201 A 1 
HETATM 38 O O2D HEM . . . B 2 -47.653 28.095 9.429 1 36.22 ? O2D HEM 201 A 1 
HETATM 39 N NA HEM . . . B 2 -45.974 33.845 4.528 1 15.3 ? NA HEM 201 A 1 
HETATM 40 N NB HEM . . . B 2 -44.685 36.415 4.711 1 22.97 ? NB HEM 201 A 1 
HETATM 41 N NC HEM . . . B 2 -44.809 36.328 7.442 1 9.39 ? NC HEM 201 A 1 
HETATM 42 N ND HEM . . . B 2 -46.039 33.789 7.297 1 16.29 ? ND HEM 201 A 1 
HETATM 43 FE FE HEM . . . B 2 -45.367 35.048 5.991 1 10.42 ? FE HEM 201 A 1 
HETATM 44 H HHB HEM . . . B 2 -45.004 35.108 1.689 1 34.9 ? HHB HEM 201 A 1 
HETATM 45 H HHC HEM . . . B 2 -43.73 39.175 6.226 1 19.04 ? HHC HEM 201 A 1 
HETATM 46 H HHD HEM . . . B 2 -45.232 34.815 10.317 1 13.55 ? HHD HEM 201 A 1 
HETATM 47 H HMA HEM . . . B 2 -47.215 32.937 0.558 1 29.21 ? HMA HEM 201 A 1 
HETATM 48 H HMAA HEM . . . B 2 -46.06 31.836 0.676 1 29.21 ? HMAA HEM 201 A 1 
HETATM 49 H HMAB HEM . . . B 2 -45.679 33.382 0.515 1 29.21 ? HMAB HEM 201 A 1 
HETATM 50 H HAA HEM . . . B 2 -46.94 30.021 3.111 1 18.98 ? HAA HEM 201 A 1 
HETATM 51 H HAAA HEM . . . B 2 -47.929 30.79 2.14 1 18.98 ? HAAA HEM 201 A 1 
HETATM 52 H HBA HEM . . . B 2 -48.42 30.518 4.913 1 50.58 ? HBA HEM 201 A 1 
HETATM 53 H HBAA HEM . . . B 2 -49.041 29.529 3.842 1 50.58 ? HBAA HEM 201 A 1 
HETATM 54 H HMB HEM . . . B 2 -44.729 37.12 0.736 1 27.8 ? HMB HEM 201 A 1 
HETATM 55 H HMBA HEM . . . B 2 -43.154 37.067 0.887 1 27.8 ? HMBA HEM 201 A 1 
HETATM 56 H HMBB HEM . . . B 2 -43.909 38.458 0.947 1 27.8 ? HMBB HEM 201 A 1 
HETATM 57 H HAB HEM . . . B 2 -43.382 40.367 3.926 1 20.99 ? HAB HEM 201 A 1 
HETATM 58 H HBB HEM . . . B 2 -41.767 40.582 2.277 1 26.02 ? HBB HEM 201 A 1 
HETATM 59 H HBBA HEM . . . B 2 -41.943 38.953 1.905 1 26.02 ? HBBA HEM 201 A 1 
HETATM 60 H HMC HEM . . . B 2 -43.011 39.875 8.342 1 23.03 ? HMC HEM 201 A 1 
HETATM 61 H HMCA HEM . . . B 2 -41.946 38.998 9.12 1 23.03 ? HMCA HEM 201 A 1 
HETATM 62 H HMCB HEM . . . B 2 -43.21 39.57 9.884 1 23.03 ? HMCB HEM 201 A 1 
HETATM 63 H HAC HEM . . . B 2 -44.245 36.074 11.519 1 17.56 ? HAC HEM 201 A 1 
HETATM 64 H HBC HEM . . . B 2 -43.024 37.606 12.696 1 15.77 ? HBC HEM 201 A 1 
HETATM 65 H HBCA HEM . . . B 2 -42.753 38.471 11.281 1 15.77 ? HBCA HEM 201 A 1 
HETATM 66 H HMD HEM . . . B 2 -46.58 31.572 11.04 1 25.15 ? HMD HEM 201 A 1 
HETATM 67 H HMDA HEM . . . B 2 -46.576 33.153 11.289 1 25.15 ? HMDA HEM 201 A 1 
HETATM 68 H HMDB HEM . . . B 2 -45.197 32.376 11.056 1 25.15 ? HMDB HEM 201 A 1 
HETATM 69 H HAD HEM . . . B 2 -48.035 30.256 8.004 1 20.79 ? HAD HEM 201 A 1 
HETATM 70 H HADA HEM . . . B 2 -47.648 30.391 9.535 1 20.79 ? HADA HEM 201 A 1 
HETATM 71 H HBD HEM . . . B 2 -45.345 29.869 8.858 1 23.89 ? HBD HEM 201 A 1 
HETATM 72 H HBDA HEM . . . B 2 -45.946 29.434 7.459 1 23.89 ? HBDA HEM 201 A 1 
HETATM 73 H HHA HEM . . . B 2 -47.574 31.334 5.831 1 26.61 ? HHA HEM 201 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           280 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           73 
#