data_7DDT # _model_server_result.job_id gIYp2Hs_FlAdGrE0b8hTAw _model_server_result.datetime_utc '2025-03-04 06:56:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ddt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 7DDT # _exptl.entry_id 7DDT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 69.085 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description IMIDAZOLE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7DDT _cell.length_a 115.36 _cell.length_b 115.36 _cell.length_c 35 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7DDT _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall 'P 31 2"' _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 94 A HIS 93 1_555 B FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc2 B FE HEM . A HEM 201 1_555 C N3 IMD . A IMD 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? # _chem_comp.formula 'C3 H5 N2 1' _chem_comp.formula_weight 69.085 _chem_comp.id IMD _chem_comp.mon_nstd_flag . _chem_comp.name IMIDAZOLE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 IMD sing 242 n y N1 C5 IMD sing 243 n y N1 HN1 IMD sing 244 n n C2 N3 IMD doub 245 n y C2 H2 IMD sing 246 n n N3 C4 IMD sing 247 n y N3 HN3 IMD sing 248 n n C4 C5 IMD doub 249 n y C4 H4 IMD sing 250 n n C5 H5 IMD sing 251 n n # _atom_sites.entry_id 7DDT _atom_sites.fract_transf_matrix[1][1] 0.008669 _atom_sites.fract_transf_matrix[1][2] 0.005005 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01001 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.028571 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 201 154 HEM HEM . C 3 IMD A 1 202 155 IMD IMD . D 4 SO4 A 1 203 1 SO4 SO4 . E 4 SO4 A 1 204 2 SO4 SO4 . F 4 SO4 A 1 205 3 SO4 SO4 . G 4 SO4 A 1 206 4 SO4 SO4 . H 4 SO4 A 1 207 5 SO4 SO4 . I 4 SO4 A 1 208 6 SO4 SO4 . J 4 SO4 A 1 209 7 SO4 SO4 . K 4 SO4 A 1 210 9 SO4 SO4 . L 4 SO4 A 1 211 10 SO4 SO4 . M 5 HOH A 1 301 47 HOH HOH . M 5 HOH A 2 302 56 HOH HOH . M 5 HOH A 3 303 72 HOH HOH . M 5 HOH A 4 304 46 HOH HOH . M 5 HOH A 5 305 74 HOH HOH . M 5 HOH A 6 306 65 HOH HOH . M 5 HOH A 7 307 29 HOH HOH . M 5 HOH A 8 308 55 HOH HOH . M 5 HOH A 9 309 73 HOH HOH . M 5 HOH A 10 310 35 HOH HOH . M 5 HOH A 11 311 60 HOH HOH . M 5 HOH A 12 312 66 HOH HOH . M 5 HOH A 13 313 54 HOH HOH . M 5 HOH A 14 314 71 HOH HOH . M 5 HOH A 15 315 41 HOH HOH . M 5 HOH A 16 316 67 HOH HOH . M 5 HOH A 17 317 14 HOH HOH . M 5 HOH A 18 318 68 HOH HOH . M 5 HOH A 19 319 62 HOH HOH . M 5 HOH A 20 320 5 HOH HOH . M 5 HOH A 21 321 52 HOH HOH . M 5 HOH A 22 322 63 HOH HOH . M 5 HOH A 23 323 40 HOH HOH . M 5 HOH A 24 324 37 HOH HOH . M 5 HOH A 25 325 28 HOH HOH . M 5 HOH A 26 326 70 HOH HOH . M 5 HOH A 27 327 69 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 IMD . . . C 3 -42.103 32.271 5.391 1 26.83 ? N1 IMD 202 A 1 HETATM 2 C C2 IMD . . . C 3 -43.296 32.879 5.251 1 20.21 ? C2 IMD 202 A 1 HETATM 3 N N3 IMD . . . C 3 -43.398 33.839 6.201 1 14.24 ? N3 IMD 202 A 1 HETATM 4 C C4 IMD . . . C 3 -42.282 33.852 6.942 1 14.18 ? C4 IMD 202 A 1 HETATM 5 C C5 IMD . . . C 3 -41.463 32.855 6.436 1 25.14 ? C5 IMD 202 A 1 HETATM 6 H HN1 IMD . . . C 3 -41.758 31.54 4.837 1 32.31 ? HN1 IMD 202 A 1 HETATM 7 H H2 IMD . . . C 3 -43.975 32.663 4.578 1 24.38 ? H2 IMD 202 A 1 HETATM 8 H H4 IMD . . . C 3 -42.085 34.448 7.694 1 17.14 ? H4 IMD 202 A 1 HETATM 9 H H5 IMD . . . C 3 -40.575 32.614 6.775 1 30.29 ? H5 IMD 202 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 243 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 9 #