data_7DDV # _model_server_result.job_id DvGtmCdNy0034OBiNp79kw _model_server_result.datetime_utc '2025-04-09 17:52:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ddv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 7DDV # _exptl.entry_id 7DDV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7DDV _cell.length_a 111.829 _cell.length_b 111.829 _cell.length_c 111.829 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7DDV _symmetry.cell_setting ? _symmetry.Int_Tables_number 207 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 4 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details 24-meric _pdbx_struct_assembly.oligomeric_count 24 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 5 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 6 'crystal symmetry operation' 6_555 z,-x,-y 0 0 1 -1 0 0 0 -1 0 0 0 0 7 'crystal symmetry operation' 7_555 -z,-x,y 0 0 -1 -1 0 0 0 1 0 0 0 0 8 'crystal symmetry operation' 8_555 -z,x,-y 0 0 -1 1 0 0 0 -1 0 0 0 0 9 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 10 'crystal symmetry operation' 10_555 -y,z,-x 0 -1 0 0 0 1 -1 0 0 0 0 0 11 'crystal symmetry operation' 11_555 y,-z,-x 0 1 0 0 0 -1 -1 0 0 0 0 0 12 'crystal symmetry operation' 12_555 -y,-z,x 0 -1 0 0 0 -1 1 0 0 0 0 0 13 'crystal symmetry operation' 13_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 14 'crystal symmetry operation' 14_555 -y,-x,-z 0 -1 0 -1 0 0 0 0 -1 0 0 0 15 'crystal symmetry operation' 15_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 16 'crystal symmetry operation' 16_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 17 'crystal symmetry operation' 17_555 x,z,-y 1 0 0 0 0 1 0 -1 0 0 0 0 18 'crystal symmetry operation' 18_555 -x,z,y -1 0 0 0 0 1 0 1 0 0 0 0 19 'crystal symmetry operation' 19_555 -x,-z,-y -1 0 0 0 0 -1 0 -1 0 0 0 0 20 'crystal symmetry operation' 20_555 x,-z,y 1 0 0 0 0 -1 0 1 0 0 0 0 21 'crystal symmetry operation' 21_555 z,y,-x 0 0 1 0 1 0 -1 0 0 0 0 0 22 'crystal symmetry operation' 22_555 z,-y,x 0 0 1 0 -1 0 1 0 0 0 0 0 23 'crystal symmetry operation' 23_555 -z,y,x 0 0 -1 0 1 0 1 0 0 0 0 0 24 'crystal symmetry operation' 24_555 -z,-y,-x 0 0 -1 0 -1 0 -1 0 0 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 53 A HIS 47 1_555 C MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? metalc ? metalc2 A NE2 HIS 79 A HIS 73 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc3 A NE2 HIS 80 A HIS 74 1_555 C MN MN . A MN 302 16_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? metalc ? metalc4 A OE1 GLU 83 A GLU 77 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc5 A NE2 HIS 158 A HIS 152 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc6 A NE2 HIS 182 A HIS 176 1_555 C MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc7 A NE2 HIS 183 A HIS 177 1_555 B MN MN . A MN 301 15_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc8 A OE1 GLU 186 A GLU 180 1_555 C MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc9 B MN MN . A MN 301 1_555 D N7 H3L . A H3L 303 16_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? metalc ? metalc10 B MN MN . A MN 301 1_555 H O HOH . A HOH 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc11 C MN MN . A MN 302 1_555 D N5 H3L . A H3L 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? metalc ? metalc12 C MN MN . A MN 302 1_555 D N3 H3L . A H3L 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7DDV _atom_sites.fract_transf_matrix[1][1] 0.008942 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008942 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008942 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 301 200 MN MN . C 2 MN A 1 302 201 MN MN . D 3 H3L A 1 303 202 H3L TSI . E 4 GOL A 1 304 203 GOL GOL . F 5 CL A 1 305 204 CL CL . G 5 CL A 1 306 205 CL CL . H 6 HOH A 1 401 304 HOH HOH . H 6 HOH A 2 402 301 HOH HOH . H 6 HOH A 3 403 230 HOH HOH . H 6 HOH A 4 404 293 HOH HOH . H 6 HOH A 5 405 261 HOH HOH . H 6 HOH A 6 406 231 HOH HOH . H 6 HOH A 7 407 320 HOH HOH . H 6 HOH A 8 408 252 HOH HOH . H 6 HOH A 9 409 264 HOH HOH . H 6 HOH A 10 410 285 HOH HOH . H 6 HOH A 11 411 218 HOH HOH . H 6 HOH A 12 412 310 HOH HOH . H 6 HOH A 13 413 311 HOH HOH . H 6 HOH A 14 414 250 HOH HOH . H 6 HOH A 15 415 289 HOH HOH . H 6 HOH A 16 416 280 HOH HOH . H 6 HOH A 17 417 207 HOH HOH . H 6 HOH A 18 418 229 HOH HOH . H 6 HOH A 19 419 296 HOH HOH . H 6 HOH A 20 420 257 HOH HOH . H 6 HOH A 21 421 206 HOH HOH . H 6 HOH A 22 422 226 HOH HOH . H 6 HOH A 23 423 208 HOH HOH . H 6 HOH A 24 424 287 HOH HOH . H 6 HOH A 25 425 247 HOH HOH . H 6 HOH A 26 426 209 HOH HOH . H 6 HOH A 27 427 281 HOH HOH . H 6 HOH A 28 428 237 HOH HOH . H 6 HOH A 29 429 274 HOH HOH . H 6 HOH A 30 430 297 HOH HOH . H 6 HOH A 31 431 243 HOH HOH . H 6 HOH A 32 432 212 HOH HOH . H 6 HOH A 33 433 216 HOH HOH . H 6 HOH A 34 434 256 HOH HOH . H 6 HOH A 35 435 244 HOH HOH . H 6 HOH A 36 436 255 HOH HOH . H 6 HOH A 37 437 219 HOH HOH . H 6 HOH A 38 438 224 HOH HOH . H 6 HOH A 39 439 211 HOH HOH . H 6 HOH A 40 440 210 HOH HOH . H 6 HOH A 41 441 232 HOH HOH . H 6 HOH A 42 442 283 HOH HOH . H 6 HOH A 43 443 223 HOH HOH . H 6 HOH A 44 444 319 HOH HOH . H 6 HOH A 45 445 298 HOH HOH . H 6 HOH A 46 446 220 HOH HOH . H 6 HOH A 47 447 221 HOH HOH . H 6 HOH A 48 448 265 HOH HOH . H 6 HOH A 49 449 222 HOH HOH . H 6 HOH A 50 450 262 HOH HOH . H 6 HOH A 51 451 326 HOH HOH . H 6 HOH A 52 452 321 HOH HOH . H 6 HOH A 53 453 258 HOH HOH . H 6 HOH A 54 454 259 HOH HOH . H 6 HOH A 55 455 253 HOH HOH . H 6 HOH A 56 456 286 HOH HOH . H 6 HOH A 57 457 228 HOH HOH . H 6 HOH A 58 458 275 HOH HOH . H 6 HOH A 59 459 276 HOH HOH . H 6 HOH A 60 460 248 HOH HOH . H 6 HOH A 61 461 291 HOH HOH . H 6 HOH A 62 462 239 HOH HOH . H 6 HOH A 63 463 215 HOH HOH . H 6 HOH A 64 464 277 HOH HOH . H 6 HOH A 65 465 314 HOH HOH . H 6 HOH A 66 466 241 HOH HOH . H 6 HOH A 67 467 214 HOH HOH . H 6 HOH A 68 468 217 HOH HOH . H 6 HOH A 69 469 282 HOH HOH . H 6 HOH A 70 470 263 HOH HOH . H 6 HOH A 71 471 302 HOH HOH . H 6 HOH A 72 472 322 HOH HOH . H 6 HOH A 73 473 292 HOH HOH . H 6 HOH A 74 474 325 HOH HOH . H 6 HOH A 75 475 245 HOH HOH . H 6 HOH A 76 476 238 HOH HOH . H 6 HOH A 77 477 288 HOH HOH . H 6 HOH A 78 478 312 HOH HOH . H 6 HOH A 79 479 235 HOH HOH . H 6 HOH A 80 480 240 HOH HOH . H 6 HOH A 81 481 267 HOH HOH . H 6 HOH A 82 482 271 HOH HOH . H 6 HOH A 83 483 324 HOH HOH . H 6 HOH A 84 484 236 HOH HOH . H 6 HOH A 85 485 227 HOH HOH . H 6 HOH A 86 486 234 HOH HOH . H 6 HOH A 87 487 313 HOH HOH . H 6 HOH A 88 488 225 HOH HOH . H 6 HOH A 89 489 305 HOH HOH . H 6 HOH A 90 490 315 HOH HOH . H 6 HOH A 91 491 307 HOH HOH . H 6 HOH A 92 492 309 HOH HOH . H 6 HOH A 93 493 316 HOH HOH . H 6 HOH A 94 494 270 HOH HOH . H 6 HOH A 95 495 303 HOH HOH . H 6 HOH A 96 496 317 HOH HOH . H 6 HOH A 97 497 330 HOH HOH . H 6 HOH A 98 498 318 HOH HOH . H 6 HOH A 99 499 254 HOH HOH . H 6 HOH A 100 500 295 HOH HOH . H 6 HOH A 101 501 323 HOH HOH . H 6 HOH A 102 502 269 HOH HOH . H 6 HOH A 103 503 300 HOH HOH . H 6 HOH A 104 504 260 HOH HOH . H 6 HOH A 105 505 251 HOH HOH . H 6 HOH A 106 506 278 HOH HOH . H 6 HOH A 107 507 213 HOH HOH . H 6 HOH A 108 508 246 HOH HOH . H 6 HOH A 109 509 249 HOH HOH . H 6 HOH A 110 510 328 HOH HOH . H 6 HOH A 111 511 268 HOH HOH . H 6 HOH A 112 512 294 HOH HOH . H 6 HOH A 113 513 308 HOH HOH . H 6 HOH A 114 514 299 HOH HOH . H 6 HOH A 115 515 329 HOH HOH . H 6 HOH A 116 516 306 HOH HOH . H 6 HOH A 117 517 290 HOH HOH . H 6 HOH A 118 518 266 HOH HOH . H 6 HOH A 119 519 327 HOH HOH . H 6 HOH A 120 520 272 HOH HOH . H 6 HOH A 121 521 233 HOH HOH . H 6 HOH A 122 522 284 HOH HOH . H 6 HOH A 123 523 242 HOH HOH . H 6 HOH A 124 524 279 HOH HOH . H 6 HOH A 125 525 273 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x -9.091 _atom_site.Cartn_y 17.011 _atom_site.Cartn_z 40.957 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 22.35 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 302 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 244 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #