data_7DE4 # _model_server_result.job_id b2fxGe7b6SCx-e5wPWBrIw _model_server_result.datetime_utc '2025-09-08 12:49:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7de4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":602}' # _entry.id 7DE4 # _exptl.entry_id 7DE4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 335.508 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FE-S-O HYBRID CLUSTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7DE4 _cell.length_a 142.54 _cell.length_b 142.54 _cell.length_c 117.1 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7DE4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLY 404 A GLY 404 1_555 A N CSS 405 A CSS 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C CSS 405 A CSS 405 1_555 A N ASP 406 A ASP 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? metalc ? metalc1 A SG CYS 3 A CYS 3 1_555 B FE2 SF4 . A SF4 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc2 A SG CYS 6 A CYS 6 1_555 B FE1 SF4 . A SF4 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc3 A SG CYS 18 A CYS 18 1_555 B FE4 SF4 . A SF4 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? metalc ? metalc4 A SG CYS 25 A CYS 25 1_555 B FE3 SF4 . A SF4 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc5 A NE2 HIS 249 A HIS 249 1_555 C FE7 FS2 . A FS2 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.913 ? metalc ? metalc6 A OE2 GLU 273 A GLU 273 1_555 C FE7 FS2 . A FS2 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? metalc ? metalc7 A SG CYS 317 A CYS 317 1_555 C FE6 FS2 . A FS2 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc8 A SD CSS 405 A CSS 405 1_555 C FE8 FS2 . A FS2 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? metalc ? metalc9 A SG CYS 433 A CYS 433 1_555 C FE5 FS2 . A FS2 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc10 A SG CYS 458 A CYS 458 1_555 C FE7 FS2 . A FS2 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc11 A OE2 GLU 492 A GLU 492 1_555 C FE8 FS2 . A FS2 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? # _chem_comp.formula 'Fe4 O3 S2' _chem_comp.formula_weight 335.508 _chem_comp.id FS2 _chem_comp.mon_nstd_flag . _chem_comp.name 'FE-S-O HYBRID CLUSTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE5 FE6 FS2 sing 97 n n FE5 S5 FS2 sing 98 n n FE5 S6 FS2 sing 99 n n FE5 O1 FS2 sing 100 n n FE6 FE8 FS2 sing 101 n n FE6 S5 FS2 sing 102 n n FE6 S6 FS2 sing 103 n n FE6 O8 FS2 sing 104 n n FE7 O9 FS2 sing 105 n n FE7 O1 FS2 sing 106 n n FE8 S6 FS2 sing 107 n n FE8 O8 FS2 sing 108 n n FE8 O9 FS2 sing 109 n n FE8 O1 FS2 sing 110 n n # _atom_sites.entry_id 7DE4 _atom_sites.fract_transf_matrix[1][1] 0.007016 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007016 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00854 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SF4 A 1 601 601 SF4 SF4 . C 3 FS2 A 1 602 602 FS2 FS2 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE5 FS2 . . . C 3 -45.027 -12.071 -8.802 1 126.61 ? FE5 FS2 602 A 1 HETATM 2 FE FE6 FS2 . . . C 3 -42.63 -12.483 -8.967 1 136.64 ? FE6 FS2 602 A 1 HETATM 3 FE FE7 FS2 . . . C 3 -45.089 -8.392 -8.571 1 123.71 ? FE7 FS2 602 A 1 HETATM 4 FE FE8 FS2 . . . C 3 -42.897 -10.395 -7.393 1 164.69 ? FE8 FS2 602 A 1 HETATM 5 S S5 FS2 . . . C 3 -43.833 -11.58 -10.6 1 144.32 ? S5 FS2 602 A 1 HETATM 6 S S6 FS2 . . . C 3 -43.808 -12.293 -7.218 1 155.81 ? S6 FS2 602 A 1 HETATM 7 O O8 FS2 . . . C 3 -41.913 -10.749 -8.991 1 136.15 ? O8 FS2 602 A 1 HETATM 8 O O9 FS2 . . . C 3 -43.281 -8.53 -8.077 1 151.44 ? O9 FS2 602 A 1 HETATM 9 O O1 FS2 . . . C 3 -44.779 -10.263 -8.374 1 136.79 ? O1 FS2 602 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 333 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 9 #