data_7DED # _model_server_result.job_id PmfxBKVEH46CKpklp0JY1g _model_server_result.datetime_utc '2024-10-20 12:59:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ded # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":301}' # _entry.id 7DED # _exptl.entry_id 7DED _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.156 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description alpha-D-mannopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7DED _cell.length_a 168.35 _cell.length_b 168.35 _cell.length_c 104.96 _cell.Z_PDB 56 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7DED _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details heptameric _pdbx_struct_assembly.oligomeric_count 7 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id K _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 MAN MAN C1 O1 . O3 HO3 . sing 2 ? 2 3 2 MAN MAN C1 O1 . O2 HO2 . sing 3 ? 2 4 3 MAN MAN C1 O1 . O2 HO2 . sing 4 ? 2 5 1 MAN MAN C1 O1 . O6 HO6 . sing 5 ? 2 6 5 MAN MAN C1 O1 . O3 HO3 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n H MAN 1 H 1 MAN BgB 1201 AMA 2 n H MAN 2 H 2 MAN BgB 1201 AMA 2 n H MAN 3 H 3 MAN BgB 1201 AMA 2 n H MAN 4 H 4 MAN BgB 1201 AMA 2 n H MAN 5 H 5 MAN BgB 1201 AMA 2 n H MAN 6 H 6 MAN BgB 1201 AMA 2 n I MAN 1 I 1 MAN CcC 801 AMA 2 n I MAN 2 I 2 MAN CcC 801 AMA 2 n I MAN 3 I 3 MAN CcC 801 AMA 2 n I MAN 4 I 4 MAN CcC 801 AMA 2 n I MAN 5 I 5 MAN CcC 801 AMA 2 n I MAN 6 I 6 MAN CcC 801 AMA 2 n J MAN 1 J 1 MAN FdF 1201 AMA 2 n J MAN 2 J 2 MAN FdF 1201 AMA 2 n J MAN 3 J 3 MAN FdF 1201 AMA 2 n J MAN 4 J 4 MAN FdF 1201 AMA 2 n J MAN 5 J 5 MAN FdF 1201 AMA 2 n J MAN 6 J 6 MAN FdF 1201 AMA # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 H O3 MAN . H MAN 1 1_555 H C1 MAN . H MAN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale2 H O6 MAN . H MAN 1 1_555 H C1 MAN . H MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale3 H O2 MAN . H MAN 2 1_555 H C1 MAN . H MAN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale4 H O2 MAN . H MAN 3 1_555 H C1 MAN . H MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale5 H O3 MAN . H MAN 5 1_555 H C1 MAN . H MAN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale6 I O3 MAN . I MAN 1 1_555 I C1 MAN . I MAN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale7 I O6 MAN . I MAN 1 1_555 I C1 MAN . I MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale8 I O2 MAN . I MAN 2 1_555 I C1 MAN . I MAN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale9 I O2 MAN . I MAN 3 1_555 I C1 MAN . I MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale10 I O3 MAN . I MAN 5 1_555 I C1 MAN . I MAN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale11 J O3 MAN . J MAN 1 1_555 J C1 MAN . J MAN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale12 J O6 MAN . J MAN 1 1_555 J C1 MAN . J MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale13 J O2 MAN . J MAN 2 1_555 J C1 MAN . J MAN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale14 J O2 MAN . J MAN 3 1_555 J C1 MAN . J MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale15 J O3 MAN . J MAN 5 1_555 J C1 MAN . J MAN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? # _chem_comp.formula 'C6 H12 O6' _chem_comp.formula_weight 180.156 _chem_comp.id MAN _chem_comp.mon_nstd_flag . _chem_comp.name alpha-D-mannopyranose _chem_comp.type 'd-saccharide, alpha linking' _chem_comp.pdbx_synonyms alpha-D-mannose;D-mannose;mannose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MAN sing 227 n n C1 O1 MAN sing 228 n n C1 O5 MAN sing 229 n n C1 H1 MAN sing 230 n n C2 C3 MAN sing 231 n n C2 O2 MAN sing 232 n n C2 H2 MAN sing 233 n n C3 C4 MAN sing 234 n n C3 O3 MAN sing 235 n n C3 H3 MAN sing 236 n n C4 C5 MAN sing 237 n n C4 O4 MAN sing 238 n n C4 H4 MAN sing 239 n n C5 C6 MAN sing 240 n n C5 O5 MAN sing 241 n n C5 H5 MAN sing 242 n n C6 O6 MAN sing 243 n n C6 H61 MAN sing 244 n n C6 H62 MAN sing 245 n n O1 HO1 MAN sing 246 n n O2 HO2 MAN sing 247 n n O3 HO3 MAN sing 248 n n O4 HO4 MAN sing 249 n n O6 HO6 MAN sing 250 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version MAN DManpa 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 MAN a-D-mannopyranose 'COMMON NAME' GMML 1 MAN a-D-Manp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 MAN Man 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7DED _atom_sites.fract_transf_matrix[1][1] 0.00594 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00594 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009527 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code K 3 MAN E 1 301 301 MAN MAN . L 4 EDO A 1 201 201 EDO EDO . M 4 EDO B 1 201 201 EDO EDO . N 4 EDO B 1 202 501 EDO EDO . O 4 EDO B 1 203 701 EDO EDO . P 4 EDO B 1 204 801 EDO EDO . Q 4 EDO B 1 205 901 EDO EDO . R 4 EDO B 1 206 1001 EDO EDO . S 4 EDO B 1 207 1101 EDO EDO . T 4 EDO C 1 301 301 EDO EDO . U 4 EDO C 1 302 701 EDO EDO . V 4 EDO G 1 301 301 EDO EDO . W 4 EDO G 1 302 701 EDO EDO . X 4 EDO F 1 201 201 EDO EDO . Y 4 EDO F 1 202 301 EDO EDO . Z 4 EDO F 1 203 801 EDO EDO . AA 5 HOH D 1 201 63 HOH HOH . AA 5 HOH D 2 202 42 HOH HOH . AA 5 HOH D 3 203 6 HOH HOH . AA 5 HOH D 4 204 35 HOH HOH . AA 5 HOH D 5 205 26 HOH HOH . AA 5 HOH D 6 206 172 HOH HOH . AA 5 HOH D 7 207 21 HOH HOH . AA 5 HOH D 8 208 115 HOH HOH . AA 5 HOH D 9 209 187 HOH HOH . AA 5 HOH D 10 210 93 HOH HOH . AA 5 HOH D 11 211 208 HOH HOH . AA 5 HOH D 12 212 86 HOH HOH . AA 5 HOH D 13 213 28 HOH HOH . AA 5 HOH D 14 214 161 HOH HOH . AA 5 HOH D 15 215 50 HOH HOH . AA 5 HOH D 16 216 17 HOH HOH . AA 5 HOH D 17 217 48 HOH HOH . AA 5 HOH D 18 218 85 HOH HOH . AA 5 HOH D 19 219 151 HOH HOH . AA 5 HOH D 20 220 91 HOH HOH . AA 5 HOH D 21 221 221 HOH HOH . AA 5 HOH D 22 222 197 HOH HOH . AA 5 HOH D 23 223 128 HOH HOH . BA 5 HOH E 1 401 226 HOH HOH . BA 5 HOH E 2 402 36 HOH HOH . BA 5 HOH E 3 403 8 HOH HOH . BA 5 HOH E 4 404 81 HOH HOH . BA 5 HOH E 5 405 153 HOH HOH . BA 5 HOH E 6 406 142 HOH HOH . BA 5 HOH E 7 407 111 HOH HOH . BA 5 HOH E 8 408 118 HOH HOH . BA 5 HOH E 9 409 10 HOH HOH . BA 5 HOH E 10 410 22 HOH HOH . BA 5 HOH E 11 411 88 HOH HOH . BA 5 HOH E 12 412 225 HOH HOH . CA 5 HOH A 1 301 39 HOH HOH . CA 5 HOH A 2 302 37 HOH HOH . CA 5 HOH A 3 303 194 HOH HOH . CA 5 HOH A 4 304 72 HOH HOH . CA 5 HOH A 5 305 43 HOH HOH . CA 5 HOH A 6 306 185 HOH HOH . CA 5 HOH A 7 307 49 HOH HOH . CA 5 HOH A 8 308 68 HOH HOH . CA 5 HOH A 9 309 216 HOH HOH . CA 5 HOH A 10 310 200 HOH HOH . CA 5 HOH A 11 311 145 HOH HOH . CA 5 HOH A 12 312 125 HOH HOH . CA 5 HOH A 13 313 219 HOH HOH . CA 5 HOH A 14 314 99 HOH HOH . CA 5 HOH A 15 315 51 HOH HOH . CA 5 HOH A 16 316 24 HOH HOH . CA 5 HOH A 17 317 29 HOH HOH . CA 5 HOH A 18 318 45 HOH HOH . CA 5 HOH A 19 319 198 HOH HOH . CA 5 HOH A 20 320 105 HOH HOH . CA 5 HOH A 21 321 162 HOH HOH . CA 5 HOH A 22 322 214 HOH HOH . CA 5 HOH A 23 323 80 HOH HOH . CA 5 HOH A 24 324 54 HOH HOH . CA 5 HOH A 25 325 87 HOH HOH . CA 5 HOH A 26 326 173 HOH HOH . CA 5 HOH A 27 327 190 HOH HOH . CA 5 HOH A 28 328 174 HOH HOH . DA 5 HOH B 1 301 34 HOH HOH . DA 5 HOH B 2 302 66 HOH HOH . DA 5 HOH B 3 303 14 HOH HOH . DA 5 HOH B 4 304 44 HOH HOH . DA 5 HOH B 5 305 9 HOH HOH . DA 5 HOH B 6 306 178 HOH HOH . DA 5 HOH B 7 307 140 HOH HOH . DA 5 HOH B 8 308 210 HOH HOH . DA 5 HOH B 9 309 83 HOH HOH . DA 5 HOH B 10 310 180 HOH HOH . DA 5 HOH B 11 311 33 HOH HOH . DA 5 HOH B 12 312 96 HOH HOH . DA 5 HOH B 13 313 11 HOH HOH . DA 5 HOH B 14 314 130 HOH HOH . DA 5 HOH B 15 315 13 HOH HOH . DA 5 HOH B 16 316 170 HOH HOH . DA 5 HOH B 17 317 224 HOH HOH . DA 5 HOH B 18 318 47 HOH HOH . DA 5 HOH B 19 319 70 HOH HOH . EA 5 HOH C 1 401 25 HOH HOH . EA 5 HOH C 2 402 109 HOH HOH . EA 5 HOH C 3 403 98 HOH HOH . EA 5 HOH C 4 404 182 HOH HOH . EA 5 HOH C 5 405 158 HOH HOH . EA 5 HOH C 6 406 188 HOH HOH . EA 5 HOH C 7 407 166 HOH HOH . EA 5 HOH C 8 408 69 HOH HOH . EA 5 HOH C 9 409 146 HOH HOH . EA 5 HOH C 10 410 97 HOH HOH . EA 5 HOH C 11 411 159 HOH HOH . EA 5 HOH C 12 412 78 HOH HOH . EA 5 HOH C 13 413 141 HOH HOH . EA 5 HOH C 14 414 223 HOH HOH . EA 5 HOH C 15 415 113 HOH HOH . EA 5 HOH C 16 416 189 HOH HOH . FA 5 HOH G 1 401 23 HOH HOH . FA 5 HOH G 2 402 73 HOH HOH . FA 5 HOH G 3 403 181 HOH HOH . FA 5 HOH G 4 404 40 HOH HOH . FA 5 HOH G 5 405 104 HOH HOH . FA 5 HOH G 6 406 82 HOH HOH . FA 5 HOH G 7 407 134 HOH HOH . FA 5 HOH G 8 408 156 HOH HOH . FA 5 HOH G 9 409 110 HOH HOH . FA 5 HOH G 10 410 184 HOH HOH . FA 5 HOH G 11 411 61 HOH HOH . FA 5 HOH G 12 412 27 HOH HOH . GA 5 HOH F 1 301 123 HOH HOH . GA 5 HOH F 2 302 16 HOH HOH . GA 5 HOH F 3 303 62 HOH HOH . GA 5 HOH F 4 304 144 HOH HOH . GA 5 HOH F 5 305 12 HOH HOH . GA 5 HOH F 6 306 131 HOH HOH . GA 5 HOH F 7 307 64 HOH HOH . GA 5 HOH F 8 308 18 HOH HOH . GA 5 HOH F 9 309 19 HOH HOH . GA 5 HOH F 10 310 67 HOH HOH . GA 5 HOH F 11 311 38 HOH HOH . GA 5 HOH F 12 312 102 HOH HOH . GA 5 HOH F 13 313 195 HOH HOH . GA 5 HOH F 14 314 129 HOH HOH . GA 5 HOH F 15 315 228 HOH HOH . GA 5 HOH F 16 316 138 HOH HOH . GA 5 HOH F 17 317 101 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MAN . . . K 3 82.295 84.165 44.156 1 34.69 ? C1 MAN 301 E 1 HETATM 2 C C2 MAN . . . K 3 82.296 85.353 43.202 1 35.77 ? C2 MAN 301 E 1 HETATM 3 C C3 MAN . . . K 3 80.878 85.846 42.943 1 34.12 ? C3 MAN 301 E 1 HETATM 4 C C4 MAN . . . K 3 79.96 84.69 42.566 1 32.58 ? C4 MAN 301 E 1 HETATM 5 C C5 MAN . . . K 3 80.095 83.542 43.559 1 32.26 ? C5 MAN 301 E 1 HETATM 6 C C6 MAN . . . K 3 79.232 82.356 43.146 1 29.97 ? C6 MAN 301 E 1 HETATM 7 O O1 MAN . . . K 3 81.796 84.58 45.433 1 33.67 ? O1 MAN 301 E 1 HETATM 8 O O2 MAN . . . K 3 82.903 84.969 41.962 1 32.81 ? O2 MAN 301 E 1 HETATM 9 O O3 MAN . . . K 3 80.892 86.81 41.884 1 31.85 ? O3 MAN 301 E 1 HETATM 10 O O4 MAN . . . K 3 78.602 85.145 42.545 1 29.26 ? O4 MAN 301 E 1 HETATM 11 O O5 MAN . . . K 3 81.46 83.134 43.631 1 31.85 ? O5 MAN 301 E 1 HETATM 12 O O6 MAN . . . K 3 79.485 82.037 41.773 1 25.82 ? O6 MAN 301 E 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 12 #