data_7DEP # _model_server_result.job_id T5OjCt2wrtJp6rFk34F4GA _model_server_result.datetime_utc '2024-10-19 09:22:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7dep # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":201}' # _entry.id 7DEP # _exptl.entry_id 7DEP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 130.077 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-FLUOROURACIL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7DEP _cell.length_a 116.962 _cell.length_b 116.962 _cell.length_c 77.713 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7DEP _symmetry.cell_setting ? _symmetry.Int_Tables_number 181 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_554 -y,-x,-z-2/3 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 0 0 -51.808667 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C4 H3 F N2 O2' _chem_comp.formula_weight 130.077 _chem_comp.id URF _chem_comp.mon_nstd_flag . _chem_comp.name 5-FLUOROURACIL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 URF sing 317 n n N1 C6 URF sing 318 n n N1 HN1 URF sing 319 n n C2 N3 URF sing 320 n n C2 O2 URF doub 321 n n N3 C4 URF sing 322 n n N3 HN3 URF sing 323 n n C4 C5 URF sing 324 n n C4 O4 URF doub 325 n n C5 C6 URF doub 326 n n C5 F5 URF sing 327 n n C6 H6 URF sing 328 n n # _atom_sites.entry_id 7DEP _atom_sites.fract_transf_matrix[1][1] 0.00855 _atom_sites.fract_transf_matrix[1][2] 0.004936 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009872 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012868 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 URF A 1 201 201 URF URF . D 2 URF B 1 201 201 URF URF . E 3 HOH B 1 301 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 URF . . . D 2 26.444 -3.291 -17.459 1 105.82 ? N1 URF 201 B 1 HETATM 2 C C2 URF . . . D 2 26.962 -3.467 -16.208 1 114.65 ? C2 URF 201 B 1 HETATM 3 N N3 URF . . . D 2 26.52 -4.441 -15.383 1 111.33 ? N3 URF 201 B 1 HETATM 4 C C4 URF . . . D 2 25.546 -5.288 -15.767 1 116.83 ? C4 URF 201 B 1 HETATM 5 C C5 URF . . . D 2 24.959 -5.118 -17.135 1 124.37 ? C5 URF 201 B 1 HETATM 6 C C6 URF . . . D 2 25.464 -4.084 -17.937 1 107.97 ? C6 URF 201 B 1 HETATM 7 O O2 URF . . . D 2 27.881 -2.715 -15.776 1 110.76 ? O2 URF 201 B 1 HETATM 8 O O4 URF . . . D 2 25.144 -6.197 -14.989 1 113.7 ? O4 URF 201 B 1 HETATM 9 F F5 URF . . . D 2 23.974 -5.945 -17.571 1 129.14 ? F5 URF 201 B 1 HETATM 10 H HN1 URF . . . D 2 26.814 -2.526 -18.058 1 127.2 ? HN1 URF 201 B 1 HETATM 11 H HN3 URF . . . D 2 26.939 -4.539 -14.436 1 133.81 ? HN3 URF 201 B 1 HETATM 12 H H6 URF . . . D 2 25.07 -3.925 -18.933 1 129.79 ? H6 URF 201 B 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 12 #