data_7DF2 # _model_server_result.job_id w5FYjgmOMCAAlGaNCchXQg _model_server_result.datetime_utc '2025-04-05 20:09:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7df2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 7DF2 # _exptl.entry_id 7DF2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7DF2 _cell.length_a 62.916 _cell.length_b 62.916 _cell.length_c 100.499 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7DF2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall 'P 4abw 2nw' _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 1 _pdbx_entity_branch_link.entity_branch_list_num_2 2 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.comp_id_2 BGC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O1 _pdbx_entity_branch_link.leaving_atom_id_2 HO1 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B GLC 1 C 1 GLC C 1 GLC 2 n B BGC 2 C 2 BGC C 2 GLC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 62 A CYS 63 1_555 A SG CYS 68 A CYS 69 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.066 ? disulf ? disulf2 A SG CYS 119 A CYS 120 1_555 A SG CYS 196 A CYS 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf3 A SG CYS 148 A CYS 149 1_555 A SG CYS 172 A CYS 173 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.05 ? covale ? covale1 B C1 GLC . C GLC 1 1_555 B O1 BGC . C BGC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? metalc ? metalc1 A O CYS 62 A CYS 63 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc2 A OD1 ASP 63 A ASP 64 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? metalc ? metalc3 A OD1 ASP 63 A ASP 64 1_555 D CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.665 ? metalc ? metalc4 A OD2 ASP 63 A ASP 64 1_555 D CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? metalc ? metalc5 A OD2 ASP 63 A ASP 64 1_555 E CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? metalc ? metalc6 A OD1 ASP 66 A ASP 67 1_555 E CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc7 A O LYS 67 A LYS 68 1_555 E CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc8 A OD2 ASP 69 A ASP 70 1_555 D CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc9 A OD1 ASP 69 A ASP 70 1_555 E CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.543 ? metalc ? metalc10 A OD2 ASP 69 A ASP 70 1_555 E CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.568 ? metalc ? metalc11 A OD1 ASN 103 A ASN 104 1_555 E CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc12 A OD2 ASP 134 A ASP 135 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc13 A OD1 ASP 134 A ASP 135 1_555 D CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.457 ? metalc ? metalc14 A OD2 ASP 134 A ASP 135 1_555 D CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.684 ? metalc ? metalc15 A O LYS 135 A LYS 136 1_555 D CA CA . A CA 302 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.383 ? metalc ? metalc16 A O LYS 135 A LYS 136 1_555 D CA CA . A CA 302 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.361 ? metalc ? metalc17 A OD1 ASP 136 A ASP 137 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.519 ? metalc ? metalc18 A OD2 ASP 136 A ASP 137 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.509 ? metalc ? metalc19 A OD1 ASP 136 A ASP 137 1_555 D CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? metalc ? metalc20 A OD2 ASP 141 A ASP 142 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.47 ? metalc ? metalc21 C CA CA . A CA 301 1_555 F O HOH . A HOH 546 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? metalc ? metalc22 D CA CA . A CA 302 1_555 F O HOH . A HOH 548 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.414 ? metalc ? metalc23 E CA CA . A CA 303 1_555 F O HOH . A HOH 552 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7DF2 _atom_sites.fract_transf_matrix[1][1] 0.015894 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015894 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00995 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA A 1 301 1 CA CA . D 3 CA A 1 302 2 CA CA . E 3 CA A 1 303 3 CA CA . F 4 HOH A 1 401 62 HOH HOH . F 4 HOH A 2 402 106 HOH HOH . F 4 HOH A 3 403 122 HOH HOH . F 4 HOH A 4 404 168 HOH HOH . F 4 HOH A 5 405 54 HOH HOH . F 4 HOH A 6 406 148 HOH HOH . F 4 HOH A 7 407 64 HOH HOH . F 4 HOH A 8 408 1 HOH HOH . F 4 HOH A 9 409 40 HOH HOH . F 4 HOH A 10 410 103 HOH HOH . F 4 HOH A 11 411 125 HOH HOH . F 4 HOH A 12 412 90 HOH HOH . F 4 HOH A 13 413 195 HOH HOH . F 4 HOH A 14 414 186 HOH HOH . F 4 HOH A 15 415 47 HOH HOH . F 4 HOH A 16 416 24 HOH HOH . F 4 HOH A 17 417 63 HOH HOH . F 4 HOH A 18 418 97 HOH HOH . F 4 HOH A 19 419 227 HOH HOH . F 4 HOH A 20 420 139 HOH HOH . F 4 HOH A 21 421 191 HOH HOH . F 4 HOH A 22 422 130 HOH HOH . F 4 HOH A 23 423 27 HOH HOH . F 4 HOH A 24 424 48 HOH HOH . F 4 HOH A 25 425 46 HOH HOH . F 4 HOH A 26 426 14 HOH HOH . F 4 HOH A 27 427 134 HOH HOH . F 4 HOH A 28 428 220 HOH HOH . F 4 HOH A 29 429 194 HOH HOH . F 4 HOH A 30 430 36 HOH HOH . F 4 HOH A 31 431 23 HOH HOH . F 4 HOH A 32 432 93 HOH HOH . F 4 HOH A 33 433 121 HOH HOH . F 4 HOH A 34 434 65 HOH HOH . F 4 HOH A 35 435 37 HOH HOH . F 4 HOH A 36 436 129 HOH HOH . F 4 HOH A 37 437 86 HOH HOH . F 4 HOH A 38 438 57 HOH HOH . F 4 HOH A 39 439 119 HOH HOH . F 4 HOH A 40 440 111 HOH HOH . F 4 HOH A 41 441 19 HOH HOH . F 4 HOH A 42 442 87 HOH HOH . F 4 HOH A 43 443 76 HOH HOH . F 4 HOH A 44 444 71 HOH HOH . F 4 HOH A 45 445 108 HOH HOH . F 4 HOH A 46 446 132 HOH HOH . F 4 HOH A 47 447 182 HOH HOH . F 4 HOH A 48 448 60 HOH HOH . F 4 HOH A 49 449 77 HOH HOH . F 4 HOH A 50 450 91 HOH HOH . F 4 HOH A 51 451 99 HOH HOH . F 4 HOH A 52 452 178 HOH HOH . F 4 HOH A 53 453 89 HOH HOH . F 4 HOH A 54 454 29 HOH HOH . F 4 HOH A 55 455 68 HOH HOH . F 4 HOH A 56 456 92 HOH HOH . F 4 HOH A 57 457 160 HOH HOH . F 4 HOH A 58 458 16 HOH HOH . F 4 HOH A 59 459 116 HOH HOH . F 4 HOH A 60 460 78 HOH HOH . F 4 HOH A 61 461 39 HOH HOH . F 4 HOH A 62 462 107 HOH HOH . F 4 HOH A 63 463 170 HOH HOH . F 4 HOH A 64 464 105 HOH HOH . F 4 HOH A 65 465 4 HOH HOH . F 4 HOH A 66 466 127 HOH HOH . F 4 HOH A 67 467 41 HOH HOH . F 4 HOH A 68 468 8 HOH HOH . F 4 HOH A 69 469 162 HOH HOH . F 4 HOH A 70 470 117 HOH HOH . F 4 HOH A 71 471 43 HOH HOH . F 4 HOH A 72 472 26 HOH HOH . F 4 HOH A 73 473 74 HOH HOH . F 4 HOH A 74 474 69 HOH HOH . F 4 HOH A 75 475 84 HOH HOH . F 4 HOH A 76 476 70 HOH HOH . F 4 HOH A 77 477 25 HOH HOH . F 4 HOH A 78 478 81 HOH HOH . F 4 HOH A 79 479 96 HOH HOH . F 4 HOH A 80 480 82 HOH HOH . F 4 HOH A 81 481 38 HOH HOH . F 4 HOH A 82 482 100 HOH HOH . F 4 HOH A 83 483 15 HOH HOH . F 4 HOH A 84 484 174 HOH HOH . F 4 HOH A 85 485 42 HOH HOH . F 4 HOH A 86 486 49 HOH HOH . F 4 HOH A 87 487 221 HOH HOH . F 4 HOH A 88 488 83 HOH HOH . F 4 HOH A 89 489 44 HOH HOH . F 4 HOH A 90 490 35 HOH HOH . F 4 HOH A 91 491 115 HOH HOH . F 4 HOH A 92 492 34 HOH HOH . F 4 HOH A 93 493 136 HOH HOH . F 4 HOH A 94 494 12 HOH HOH . F 4 HOH A 95 495 32 HOH HOH . F 4 HOH A 96 496 176 HOH HOH . F 4 HOH A 97 497 50 HOH HOH . F 4 HOH A 98 498 98 HOH HOH . F 4 HOH A 99 499 13 HOH HOH . F 4 HOH A 100 500 45 HOH HOH . F 4 HOH A 101 501 21 HOH HOH . F 4 HOH A 102 502 142 HOH HOH . F 4 HOH A 103 503 67 HOH HOH . F 4 HOH A 104 504 52 HOH HOH . F 4 HOH A 105 505 18 HOH HOH . F 4 HOH A 106 506 59 HOH HOH . F 4 HOH A 107 507 145 HOH HOH . F 4 HOH A 108 508 208 HOH HOH . F 4 HOH A 109 509 156 HOH HOH . F 4 HOH A 110 510 110 HOH HOH . F 4 HOH A 111 511 201 HOH HOH . F 4 HOH A 112 512 30 HOH HOH . F 4 HOH A 113 513 17 HOH HOH . F 4 HOH A 114 514 20 HOH HOH . F 4 HOH A 115 515 141 HOH HOH . F 4 HOH A 116 516 9 HOH HOH . F 4 HOH A 117 517 56 HOH HOH . F 4 HOH A 118 518 196 HOH HOH . F 4 HOH A 119 519 61 HOH HOH . F 4 HOH A 120 520 212 HOH HOH . F 4 HOH A 121 521 55 HOH HOH . F 4 HOH A 122 522 213 HOH HOH . F 4 HOH A 123 523 169 HOH HOH . F 4 HOH A 124 524 218 HOH HOH . F 4 HOH A 125 525 58 HOH HOH . F 4 HOH A 126 526 143 HOH HOH . F 4 HOH A 127 527 155 HOH HOH . F 4 HOH A 128 528 66 HOH HOH . F 4 HOH A 129 529 219 HOH HOH . F 4 HOH A 130 530 31 HOH HOH . F 4 HOH A 131 531 11 HOH HOH . F 4 HOH A 132 532 157 HOH HOH . F 4 HOH A 133 533 28 HOH HOH . F 4 HOH A 134 534 228 HOH HOH . F 4 HOH A 135 535 123 HOH HOH . F 4 HOH A 136 536 137 HOH HOH . F 4 HOH A 137 537 151 HOH HOH . F 4 HOH A 138 538 104 HOH HOH . F 4 HOH A 139 539 118 HOH HOH . F 4 HOH A 140 540 197 HOH HOH . F 4 HOH A 141 541 198 HOH HOH . F 4 HOH A 142 542 88 HOH HOH . F 4 HOH A 143 543 126 HOH HOH . F 4 HOH A 144 544 3 HOH HOH . F 4 HOH A 145 545 112 HOH HOH . F 4 HOH A 146 546 22 HOH HOH . F 4 HOH A 147 547 51 HOH HOH . F 4 HOH A 148 548 5 HOH HOH . F 4 HOH A 149 549 216 HOH HOH . F 4 HOH A 150 550 7 HOH HOH . F 4 HOH A 151 551 10 HOH HOH . F 4 HOH A 152 552 33 HOH HOH . F 4 HOH A 153 553 222 HOH HOH . F 4 HOH A 154 554 2 HOH HOH . F 4 HOH A 155 555 152 HOH HOH . F 4 HOH A 156 556 72 HOH HOH . F 4 HOH A 157 557 206 HOH HOH . F 4 HOH A 158 558 224 HOH HOH . F 4 HOH A 159 559 229 HOH HOH . F 4 HOH A 160 560 79 HOH HOH . F 4 HOH A 161 561 205 HOH HOH . F 4 HOH A 162 562 131 HOH HOH . F 4 HOH A 163 563 225 HOH HOH . F 4 HOH A 164 564 149 HOH HOH . F 4 HOH A 165 565 215 HOH HOH . F 4 HOH A 166 566 166 HOH HOH . F 4 HOH A 167 567 179 HOH HOH . F 4 HOH A 168 568 94 HOH HOH . F 4 HOH A 169 569 181 HOH HOH . F 4 HOH A 170 570 53 HOH HOH . F 4 HOH A 171 571 204 HOH HOH . F 4 HOH A 172 572 80 HOH HOH . F 4 HOH A 173 573 223 HOH HOH . F 4 HOH A 174 574 214 HOH HOH . F 4 HOH A 175 575 101 HOH HOH . F 4 HOH A 176 576 113 HOH HOH . F 4 HOH A 177 577 146 HOH HOH . F 4 HOH A 178 578 172 HOH HOH . F 4 HOH A 179 579 140 HOH HOH . F 4 HOH A 180 580 120 HOH HOH . F 4 HOH A 181 581 207 HOH HOH . F 4 HOH A 182 582 211 HOH HOH . F 4 HOH A 183 583 226 HOH HOH . F 4 HOH A 184 584 159 HOH HOH . F 4 HOH A 185 585 114 HOH HOH . F 4 HOH A 186 586 199 HOH HOH . F 4 HOH A 187 587 187 HOH HOH . F 4 HOH A 188 588 209 HOH HOH . F 4 HOH A 189 589 133 HOH HOH . F 4 HOH A 190 590 210 HOH HOH . F 4 HOH A 191 591 165 HOH HOH . F 4 HOH A 192 592 202 HOH HOH . F 4 HOH A 193 593 102 HOH HOH . F 4 HOH A 194 594 153 HOH HOH . F 4 HOH A 195 595 188 HOH HOH . F 4 HOH A 196 596 203 HOH HOH . F 4 HOH A 197 597 95 HOH HOH . F 4 HOH A 198 598 124 HOH HOH . F 4 HOH A 199 599 217 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 3.879 _atom_site.Cartn_y 35.046 _atom_site.Cartn_z 34.071 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 19.08 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 302 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #