data_7DFC
#
_model_server_result.job_id            JYb7kJEt3U7h7Wpzwzndcw 
_model_server_result.datetime_utc      '2025-03-05 21:13:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7dfc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":501}' 
#
_entry.id    7DFC 
#
_exptl.entry_id    7DFC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7DFC 
_cell.length_a            116.137 
_cell.length_b            122.653 
_cell.length_c            144.064 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7DFC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        24 
_symmetry.space_group_name_Hall    'I 2b 2c' 
_symmetry.space_group_name_H-M     'I 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 C SG CYS 36 L CYS 36 1_555 C SG CYS 101 L CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf2 C SG CYS 147 L CYS 147 1_555 C SG CYS 207 L CYS 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf3 D SG CYS 37 H CYS 37 1_555 D SG CYS 111 H CYS 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf4 D SG CYS 162 H CYS 162 1_555 D SG CYS 218 H CYS 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
covale ? covale1 B C ARG 1 V ARG 346 1_555 B N TPO 2 V TPO 347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale2 B C TPO 2 V TPO 347 1_555 B N PRO 3 V PRO 348 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? 
covale ? covale3 B C PRO 4 V PRO 349 1_555 B N SEP 5 V SEP 350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? 
covale ? covale4 B C SEP 5 V SEP 350 1_555 B N LEU 6 V LEU 351 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale5 B C CYS 13 V CYS 358 1_555 B N TPO 14 V TPO 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale6 B C TPO 14 V TPO 359 1_555 B N TPO 15 V TPO 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
covale ? covale7 B C TPO 15 V TPO 360 1_555 B N ALA 16 V ALA 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.316 ? 
covale ? covale8 B C ALA 16 V ALA 361 1_555 B N SEP 17 V SEP 362 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? 
covale ? covale9 B C SEP 17 V SEP 362 1_555 B N SEP 18 V SEP 363 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? 
covale ? covale10 B C SEP 18 V SEP 363 1_555 B N SEP 19 V SEP 364 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale11 B C SEP 19 V SEP 364 1_555 B N LEU 20 V LEU 365 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     7DFC 
_atom_sites.fract_transf_matrix[1][1]    0.008611 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008153 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006941 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 5 GOL A 1 501 401 GOL GOL . 
F 6 HOH A 1 601 36 HOH HOH . 
F 6 HOH A 2 602 5 HOH HOH . 
F 6 HOH A 3 603 41 HOH HOH . 
F 6 HOH A 4 604 21 HOH HOH . 
F 6 HOH A 5 605 23 HOH HOH . 
F 6 HOH A 6 606 62 HOH HOH . 
F 6 HOH A 7 607 55 HOH HOH . 
F 6 HOH A 8 608 52 HOH HOH . 
F 6 HOH A 9 609 65 HOH HOH . 
F 6 HOH A 10 610 16 HOH HOH . 
F 6 HOH A 11 611 2 HOH HOH . 
F 6 HOH A 12 612 14 HOH HOH . 
F 6 HOH A 13 613 64 HOH HOH . 
F 6 HOH A 14 614 27 HOH HOH . 
F 6 HOH A 15 615 63 HOH HOH . 
F 6 HOH A 16 616 56 HOH HOH . 
F 6 HOH A 17 617 74 HOH HOH . 
F 6 HOH A 18 618 72 HOH HOH . 
F 6 HOH A 19 619 69 HOH HOH . 
F 6 HOH A 20 620 66 HOH HOH . 
F 6 HOH A 21 621 76 HOH HOH . 
F 6 HOH A 22 622 28 HOH HOH . 
F 6 HOH A 23 623 60 HOH HOH . 
F 6 HOH A 24 624 24 HOH HOH . 
F 6 HOH A 25 625 67 HOH HOH . 
F 6 HOH A 26 626 47 HOH HOH . 
F 6 HOH A 27 627 50 HOH HOH . 
F 6 HOH A 28 628 12 HOH HOH . 
F 6 HOH A 29 629 30 HOH HOH . 
F 6 HOH A 30 630 4 HOH HOH . 
F 6 HOH A 31 631 70 HOH HOH . 
F 6 HOH A 32 632 34 HOH HOH . 
F 6 HOH A 33 633 59 HOH HOH . 
F 6 HOH A 34 634 40 HOH HOH . 
F 6 HOH A 35 635 35 HOH HOH . 
F 6 HOH A 36 636 43 HOH HOH . 
F 6 HOH A 37 637 49 HOH HOH . 
G 6 HOH V 1 401 8 HOH HOH . 
G 6 HOH V 2 402 57 HOH HOH . 
G 6 HOH V 3 403 29 HOH HOH . 
H 6 HOH L 1 301 13 HOH HOH . 
H 6 HOH L 2 302 19 HOH HOH . 
H 6 HOH L 3 303 68 HOH HOH . 
H 6 HOH L 4 304 51 HOH HOH . 
H 6 HOH L 5 305 61 HOH HOH . 
H 6 HOH L 6 306 48 HOH HOH . 
I 6 HOH H 1 301 44 HOH HOH . 
I 6 HOH H 2 302 75 HOH HOH . 
I 6 HOH H 3 303 26 HOH HOH . 
I 6 HOH H 4 304 37 HOH HOH . 
I 6 HOH H 5 305 38 HOH HOH . 
I 6 HOH H 6 306 3 HOH HOH . 
I 6 HOH H 7 307 58 HOH HOH . 
I 6 HOH H 8 308 53 HOH HOH . 
I 6 HOH H 9 309 46 HOH HOH . 
I 6 HOH H 10 310 17 HOH HOH . 
I 6 HOH H 11 311 32 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . E 5 23.017 -1.107 3.213 1 90.13 ? C1 GOL 501 A 1 
HETATM 2 O O1 GOL . . . E 5 22.99 -1.275 1.806 1 89.73 ? O1 GOL 501 A 1 
HETATM 3 C C2 GOL . . . E 5 21.921 -2.028 3.826 1 93.35 ? C2 GOL 501 A 1 
HETATM 4 O O2 GOL . . . E 5 22.422 -2.836 4.83 1 93.14 ? O2 GOL 501 A 1 
HETATM 5 C C3 GOL . . . E 5 20.805 -1.072 4.36 1 93.46 ? C3 GOL 501 A 1 
HETATM 6 O O3 GOL . . . E 5 19.574 -1.685 4.106 1 88.71 ? O3 GOL 501 A 1 
#
_model_server_stats.io_time_ms              37 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           315 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           6 
#