data_7DFP
#
_model_server_result.job_id            nciMWzaInvFBEQ5PJMmjXg 
_model_server_result.datetime_utc      '2025-08-30 17:07:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7dfp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1201}' 
#
_entry.id    7DFP 
#
_exptl.entry_id    7DFP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              395.47 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            8-[4-(4-fluorophenyl)-4-oxidanylidene-butyl]-1-phenyl-1,3,8-triazaspiro[4.5]decan-4-one 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          116.5 
_cell.angle_gamma         90 
_cell.entry_id            7DFP 
_cell.length_a            161.9 
_cell.length_b            40.5 
_cell.length_c            165.9 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7DFP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    'C 2y' 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 74 A CYS 107 1_555 A SG CYS 149 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf2 A SG CYS 309 A CYS 399 1_555 A SG CYS 311 A CYS 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf3 B SG CYS 23 B CYS 23 1_555 B SG CYS 88 B CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf4 B SG CYS 134 B CYS 134 1_555 B SG CYS 194 B CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf5 B SG CYS 214 B CYS 214 1_555 C SG CYS 135 C CYS 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf6 C SG CYS 22 C CYS 22 1_555 C SG CYS 96 C CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf7 C SG CYS 147 C CYS 147 1_555 C SG CYS 202 C CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
#
_chem_comp.formula           'C23 H26 F N3 O2' 
_chem_comp.formula_weight    395.47 
_chem_comp.id                SIP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              8-[4-(4-fluorophenyl)-4-oxidanylidene-butyl]-1-phenyl-1,3,8-triazaspiro[4.5]decan-4-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     Spiperone 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N9 C10 SIP sing 288 n n 
N9 C7 SIP sing 289 n n 
C10 N11 SIP sing 290 n n 
C13 C14 SIP doub 291 n y 
C13 C12 SIP sing 292 n y 
C7 O8 SIP doub 293 n n 
C7 C6 SIP sing 294 n n 
C14 C15 SIP sing 295 n y 
N11 C12 SIP sing 296 n n 
N11 C6 SIP sing 297 n n 
C12 C17 SIP doub 298 n y 
C1 C6 SIP sing 299 n n 
C1 C2 SIP sing 300 n n 
C6 C5 SIP sing 301 n n 
C15 C16 SIP doub 302 n y 
C2 N3 SIP sing 303 n n 
C17 C16 SIP sing 304 n y 
C5 C4 SIP sing 305 n n 
N3 C4 SIP sing 306 n n 
N3 C18 SIP sing 307 n n 
C18 C19 SIP sing 308 n n 
C19 C20 SIP sing 309 n n 
C20 C21 SIP sing 310 n n 
O22 C21 SIP doub 311 n n 
C21 C23 SIP sing 312 n n 
C23 C28 SIP doub 313 n y 
C23 C24 SIP sing 314 n y 
C28 C27 SIP sing 315 n y 
C24 C25 SIP doub 316 n y 
C27 C26 SIP doub 317 n y 
C25 C26 SIP sing 318 n y 
C26 F29 SIP sing 319 n n 
C1 H1 SIP sing 320 n n 
C1 H2 SIP sing 321 n n 
C2 H3 SIP sing 322 n n 
C2 H4 SIP sing 323 n n 
C4 H5 SIP sing 324 n n 
C4 H6 SIP sing 325 n n 
C5 H7 SIP sing 326 n n 
C5 H8 SIP sing 327 n n 
C10 H9 SIP sing 328 n n 
C13 H10 SIP sing 329 n n 
C14 H11 SIP sing 330 n n 
C15 H12 SIP sing 331 n n 
C16 H13 SIP sing 332 n n 
C17 H14 SIP sing 333 n n 
C18 H15 SIP sing 334 n n 
C18 H16 SIP sing 335 n n 
C19 H17 SIP sing 336 n n 
C19 H18 SIP sing 337 n n 
C20 H19 SIP sing 338 n n 
C20 H20 SIP sing 339 n n 
C24 H21 SIP sing 340 n n 
C25 H22 SIP sing 341 n n 
C27 H23 SIP sing 342 n n 
C28 H24 SIP sing 343 n n 
C10 H26 SIP sing 344 n n 
N9 H25 SIP sing 345 n n 
#
_atom_sites.entry_id                     7DFP 
_atom_sites.fract_transf_matrix[1][1]    0.006177 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00308 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.024691 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006735 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
_pdbx_nonpoly_scheme.asym_id          D 
_pdbx_nonpoly_scheme.entity_id        4 
_pdbx_nonpoly_scheme.mon_id           SIP 
_pdbx_nonpoly_scheme.pdb_strand_id    A 
_pdbx_nonpoly_scheme.ndb_seq_num      1 
_pdbx_nonpoly_scheme.pdb_seq_num      1201 
_pdbx_nonpoly_scheme.auth_seq_num     1 
_pdbx_nonpoly_scheme.pdb_mon_id       SIP 
_pdbx_nonpoly_scheme.auth_mon_id      SIP 
_pdbx_nonpoly_scheme.pdb_ins_code     . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 SIP . . . D 4 -93.995 -21.801 211.052 1 101.04 ? C1 SIP 1201 A 1 
HETATM 2 C C2 SIP . . . D 4 -92.957 -21.248 212.043 1 102.43 ? C2 SIP 1201 A 1 
HETATM 3 C C4 SIP . . . D 4 -92.322 -23.47 212.767 1 102.24 ? C4 SIP 1201 A 1 
HETATM 4 C C5 SIP . . . D 4 -93.404 -24.096 211.916 1 100.74 ? C5 SIP 1201 A 1 
HETATM 5 C C6 SIP . . . D 4 -93.697 -23.266 210.667 1 100.04 ? C6 SIP 1201 A 1 
HETATM 6 C C7 SIP . . . D 4 -92.459 -23.279 209.715 1 97.08 ? C7 SIP 1201 A 1 
HETATM 7 C C10 SIP . . . D 4 -94.115 -24.541 208.722 1 94.58 ? C10 SIP 1201 A 1 
HETATM 8 C C12 SIP . . . D 4 -96.086 -24.226 210.288 1 103.35 ? C12 SIP 1201 A 1 
HETATM 9 C C13 SIP . . . D 4 -96.62 -25.447 209.93 1 105.96 ? C13 SIP 1201 A 1 
HETATM 10 C C14 SIP . . . D 4 -97.898 -25.786 210.326 1 104.83 ? C14 SIP 1201 A 1 
HETATM 11 C C15 SIP . . . D 4 -98.641 -24.901 211.08 1 103.42 ? C15 SIP 1201 A 1 
HETATM 12 C C16 SIP . . . D 4 -98.11 -23.683 211.44 1 104.04 ? C16 SIP 1201 A 1 
HETATM 13 C C17 SIP . . . D 4 -96.837 -23.343 211.043 1 104.24 ? C17 SIP 1201 A 1 
HETATM 14 C C18 SIP . . . D 4 -91.583 -21.602 213.959 1 103.63 ? C18 SIP 1201 A 1 
HETATM 15 C C19 SIP . . . D 4 -92.038 -20.241 214.426 1 106.72 ? C19 SIP 1201 A 1 
HETATM 16 C C20 SIP . . . D 4 -91.572 -19.986 215.827 1 109.96 ? C20 SIP 1201 A 1 
HETATM 17 C C21 SIP . . . D 4 -91.823 -18.593 216.346 1 111.05 ? C21 SIP 1201 A 1 
HETATM 18 C C23 SIP . . . D 4 -91.002 -18.117 217.497 1 115.82 ? C23 SIP 1201 A 1 
HETATM 19 C C24 SIP . . . D 4 -90.064 -18.954 218.066 1 116.05 ? C24 SIP 1201 A 1 
HETATM 20 C C25 SIP . . . D 4 -89.297 -18.55 219.137 1 114.29 ? C25 SIP 1201 A 1 
HETATM 21 C C26 SIP . . . D 4 -89.485 -17.281 219.646 1 114.41 ? C26 SIP 1201 A 1 
HETATM 22 C C27 SIP . . . D 4 -90.421 -16.428 219.099 1 115.14 ? C27 SIP 1201 A 1 
HETATM 23 C C28 SIP . . . D 4 -91.171 -16.861 218.028 1 116.46 ? C28 SIP 1201 A 1 
HETATM 24 F F29 SIP . . . D 4 -88.738 -16.863 220.702 1 114.28 ? F29 SIP 1201 A 1 
HETATM 25 N N3 SIP . . . D 4 -92.703 -22.132 213.209 1 103.38 ? N3 SIP 1201 A 1 
HETATM 26 N N9 SIP . . . D 4 -92.758 -24.01 208.651 1 96.66 ? N9 SIP 1201 A 1 
HETATM 27 N N11 SIP . . . D 4 -94.793 -23.906 209.872 1 98.31 ? N11 SIP 1201 A 1 
HETATM 28 O O8 SIP . . . D 4 -91.387 -22.714 209.899 1 93.5 ? O8 SIP 1201 A 1 
HETATM 29 O O22 SIP . . . D 4 -92.678 -17.887 215.856 1 112.51 ? O22 SIP 1201 A 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           701 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           29 
#