data_7DFR # _model_server_result.job_id 1D5BfcMFbhoAEBks2iiSvA _model_server_result.datetime_utc '2024-11-05 19:42:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7dfr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":164}' # _entry.id 7DFR # _exptl.entry_id 7DFR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7DFR _cell.length_a 62.207 _cell.length_b 62.207 _cell.length_c 105.525 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7DFR _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 152 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 152 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 152 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 152 _struct_conn.ptnr2_symmetry 4_556 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.56 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 290 n n PA O2A NAP sing 291 n n PA O5B NAP sing 292 n n PA O3 NAP sing 293 n n O2A HOA2 NAP sing 294 n n O5B C5B NAP sing 295 n n C5B C4B NAP sing 296 n n C5B H51A NAP sing 297 n n C5B H52A NAP sing 298 n n C4B O4B NAP sing 299 n n C4B C3B NAP sing 300 n n C4B H4B NAP sing 301 n n O4B C1B NAP sing 302 n n C3B O3B NAP sing 303 n n C3B C2B NAP sing 304 n n C3B H3B NAP sing 305 n n O3B HO3A NAP sing 306 n n C2B O2B NAP sing 307 n n C2B C1B NAP sing 308 n n C2B H2B NAP sing 309 n n O2B P2B NAP sing 310 n n C1B N9A NAP sing 311 n n C1B H1B NAP sing 312 n n N9A C8A NAP sing 313 n y N9A C4A NAP sing 314 n y C8A N7A NAP doub 315 n y C8A H8A NAP sing 316 n n N7A C5A NAP sing 317 n y C5A C6A NAP sing 318 n y C5A C4A NAP doub 319 n y C6A N6A NAP sing 320 n n C6A N1A NAP doub 321 n y N6A H61A NAP sing 322 n n N6A H62A NAP sing 323 n n N1A C2A NAP sing 324 n y C2A N3A NAP doub 325 n y C2A H2A NAP sing 326 n n N3A C4A NAP sing 327 n y O3 PN NAP sing 328 n n PN O1N NAP doub 329 n n PN O2N NAP sing 330 n n PN O5D NAP sing 331 n n O5D C5D NAP sing 332 n n C5D C4D NAP sing 333 n n C5D H51N NAP sing 334 n n C5D H52N NAP sing 335 n n C4D O4D NAP sing 336 n n C4D C3D NAP sing 337 n n C4D H4D NAP sing 338 n n O4D C1D NAP sing 339 n n C3D O3D NAP sing 340 n n C3D C2D NAP sing 341 n n C3D H3D NAP sing 342 n n O3D HO3N NAP sing 343 n n C2D O2D NAP sing 344 n n C2D C1D NAP sing 345 n n C2D H2D NAP sing 346 n n O2D HO2N NAP sing 347 n n C1D N1N NAP sing 348 n n C1D H1D NAP sing 349 n n N1N C2N NAP sing 350 n y N1N C6N NAP doub 351 n y C2N C3N NAP doub 352 n y C2N H2N NAP sing 353 n n C3N C7N NAP sing 354 n n C3N C4N NAP sing 355 n y C7N O7N NAP doub 356 n n C7N N7N NAP sing 357 n n N7N H71N NAP sing 358 n n N7N H72N NAP sing 359 n n C4N C5N NAP doub 360 n y C4N H4N NAP sing 361 n n C5N C6N NAP sing 362 n y C5N H5N NAP sing 363 n n C6N H6N NAP sing 364 n n P2B O1X NAP doub 365 n n P2B O2X NAP sing 366 n n P2B O3X NAP sing 367 n n O2X HOP2 NAP sing 368 n n O3X HOP3 NAP sing 369 n n # _atom_sites.entry_id 7DFR _atom_sites.fract_transf_matrix[1][1] 0.016075 _atom_sites.fract_transf_matrix[1][2] 0.009281 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018562 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009476 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FOL A 1 161 161 FOL FOL . C 3 NAP A 1 164 164 NAP NAP . D 4 HOH A 1 201 201 HOH HOH . D 4 HOH A 2 202 202 HOH HOH . D 4 HOH A 3 203 203 HOH HOH . D 4 HOH A 4 204 204 HOH HOH . D 4 HOH A 5 205 205 HOH HOH . D 4 HOH A 6 206 206 HOH HOH . D 4 HOH A 7 207 207 HOH HOH . D 4 HOH A 8 208 208 HOH HOH . D 4 HOH A 9 209 209 HOH HOH . D 4 HOH A 10 210 210 HOH HOH . D 4 HOH A 11 211 211 HOH HOH . D 4 HOH A 12 212 212 HOH HOH . D 4 HOH A 13 213 213 HOH HOH . D 4 HOH A 14 214 214 HOH HOH . D 4 HOH A 15 215 215 HOH HOH . D 4 HOH A 16 216 216 HOH HOH . D 4 HOH A 17 217 217 HOH HOH . D 4 HOH A 18 218 218 HOH HOH . D 4 HOH A 19 219 219 HOH HOH . D 4 HOH A 20 220 220 HOH HOH . D 4 HOH A 21 221 221 HOH HOH . D 4 HOH A 22 222 222 HOH HOH . D 4 HOH A 23 223 223 HOH HOH . D 4 HOH A 24 224 224 HOH HOH . D 4 HOH A 25 225 225 HOH HOH . D 4 HOH A 26 226 226 HOH HOH . D 4 HOH A 27 227 227 HOH HOH . D 4 HOH A 28 228 228 HOH HOH . D 4 HOH A 29 229 229 HOH HOH . D 4 HOH A 30 230 230 HOH HOH . D 4 HOH A 31 231 231 HOH HOH . D 4 HOH A 32 232 232 HOH HOH . D 4 HOH A 33 233 233 HOH HOH . D 4 HOH A 34 234 234 HOH HOH . D 4 HOH A 35 235 235 HOH HOH . D 4 HOH A 36 236 236 HOH HOH . D 4 HOH A 37 237 237 HOH HOH . D 4 HOH A 38 238 238 HOH HOH . D 4 HOH A 39 239 239 HOH HOH . D 4 HOH A 40 240 240 HOH HOH . D 4 HOH A 41 241 241 HOH HOH . D 4 HOH A 42 301 301 HOH HOH . D 4 HOH A 43 304 304 HOH HOH . D 4 HOH A 44 305 305 HOH HOH . D 4 HOH A 45 310 310 HOH HOH . D 4 HOH A 46 311 311 HOH HOH . D 4 HOH A 47 313 313 HOH HOH . D 4 HOH A 48 314 314 HOH HOH . D 4 HOH A 49 315 315 HOH HOH . D 4 HOH A 50 317 317 HOH HOH . D 4 HOH A 51 318 318 HOH HOH . D 4 HOH A 52 323 323 HOH HOH . D 4 HOH A 53 401 401 HOH HOH . D 4 HOH A 54 402 402 HOH HOH . D 4 HOH A 55 403 403 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . C 3 17.044 28.534 27.601 1 46.16 ? PA NAP 164 A 1 HETATM 2 O O1A NAP . . . C 3 15.617 28.131 27.582 1 49.13 ? O1A NAP 164 A 1 HETATM 3 O O2A NAP . . . C 3 17.847 27.487 28.29 1 50.15 ? O2A NAP 164 A 1 HETATM 4 O O5B NAP . . . C 3 17.681 28.911 26.091 1 53 ? O5B NAP 164 A 1 HETATM 5 C C5B NAP . . . C 3 16.679 29.59 25.244 1 49.98 ? C5B NAP 164 A 1 HETATM 6 C C4B NAP . . . C 3 16.93 29.415 23.756 1 53.16 ? C4B NAP 164 A 1 HETATM 7 O O4B NAP . . . C 3 16.219 28.523 23.438 1 55.21 ? O4B NAP 164 A 1 HETATM 8 C C3B NAP . . . C 3 16.535 30.611 22.838 1 52.57 ? C3B NAP 164 A 1 HETATM 9 O O3B NAP . . . C 3 17.683 31.501 22.697 1 51.8 ? O3B NAP 164 A 1 HETATM 10 C C2B NAP . . . C 3 16.195 29.863 21.575 1 55.32 ? C2B NAP 164 A 1 HETATM 11 O O2B NAP . . . C 3 17.059 29.755 20.557 1 58.01 ? O2B NAP 164 A 1 HETATM 12 C C1B NAP . . . C 3 15.743 28.568 22.087 1 55 ? C1B NAP 164 A 1 HETATM 13 N N9A NAP . . . C 3 14.285 28.41 22.125 1 55.22 ? N9A NAP 164 A 1 HETATM 14 C C8A NAP . . . C 3 13.533 28.454 23.226 1 54.94 ? C8A NAP 164 A 1 HETATM 15 N N7A NAP . . . C 3 12.257 28.258 22.913 1 55.47 ? N7A NAP 164 A 1 HETATM 16 C C5A NAP . . . C 3 12.343 28.052 21.479 1 54.07 ? C5A NAP 164 A 1 HETATM 17 C C6A NAP . . . C 3 11.315 27.825 20.33 1 53.18 ? C6A NAP 164 A 1 HETATM 18 N N6A NAP . . . C 3 9.975 27.683 20.56 1 54.01 ? N6A NAP 164 A 1 HETATM 19 N N1A NAP . . . C 3 11.785 27.636 19.099 1 51.99 ? N1A NAP 164 A 1 HETATM 20 C C2A NAP . . . C 3 13.101 27.872 18.956 1 52.21 ? C2A NAP 164 A 1 HETATM 21 N N3A NAP . . . C 3 14.08 28.148 19.802 1 53.45 ? N3A NAP 164 A 1 HETATM 22 C C4A NAP . . . C 3 13.597 28.183 21.077 1 54.97 ? C4A NAP 164 A 1 HETATM 23 O O3 NAP . . . C 3 17.353 29.899 28.211 1 47.36 ? O3 NAP 164 A 1 HETATM 24 P PN NAP . . . C 3 17.159 30.812 29.496 1 41.08 ? PN NAP 164 A 1 HETATM 25 O O1N NAP . . . C 3 15.729 30.905 29.744 1 42.05 ? O1N NAP 164 A 1 HETATM 26 O O2N NAP . . . C 3 18.07 31.827 29.609 1 37.42 ? O2N NAP 164 A 1 HETATM 27 O O5D NAP . . . C 3 17.736 29.661 30.648 1 43.45 ? O5D NAP 164 A 1 HETATM 28 C C5D NAP . . . C 3 19.209 29.505 30.855 1 36.71 ? C5D NAP 164 A 1 HETATM 29 C C4D NAP . . . C 3 19.513 29.802 32.381 1 36.15 ? C4D NAP 164 A 1 HETATM 30 O O4D NAP . . . C 3 18.659 28.877 33.141 1 38.21 ? O4D NAP 164 A 1 HETATM 31 C C3D NAP . . . C 3 20.948 29.371 32.852 1 36.57 ? C3D NAP 164 A 1 HETATM 32 O O3D NAP . . . C 3 21.542 30.081 33.856 1 40.12 ? O3D NAP 164 A 1 HETATM 33 C C2D NAP . . . C 3 20.733 27.873 33.213 1 36.22 ? C2D NAP 164 A 1 HETATM 34 O O2D NAP . . . C 3 21.82 27.314 33.828 1 40.83 ? O2D NAP 164 A 1 HETATM 35 C C1D NAP . . . C 3 19.481 27.934 33.912 1 35.1 ? C1D NAP 164 A 1 HETATM 36 N N1N NAP . . . C 3 18.838 26.565 34.2 1 34.36 ? N1N NAP 164 A 1 HETATM 37 C C2N NAP . . . C 3 18.441 26.179 35.484 1 32.02 ? C2N NAP 164 A 1 HETATM 38 C C3N NAP . . . C 3 17.857 25.019 35.733 1 32.17 ? C3N NAP 164 A 1 HETATM 39 C C7N NAP . . . C 3 17.638 24.675 37.132 1 28.88 ? C7N NAP 164 A 1 HETATM 40 O O7N NAP . . . C 3 16.916 23.707 37.484 1 28.74 ? O7N NAP 164 A 1 HETATM 41 N N7N NAP . . . C 3 18.009 25.511 38.092 1 27.6 ? N7N NAP 164 A 1 HETATM 42 C C4N NAP . . . C 3 17.379 24.062 34.591 1 34.06 ? C4N NAP 164 A 1 HETATM 43 C C5N NAP . . . C 3 17.823 24.664 33.253 1 28.82 ? C5N NAP 164 A 1 HETATM 44 C C6N NAP . . . C 3 18.415 25.796 33.15 1 29.5 ? C6N NAP 164 A 1 HETATM 45 P P2B NAP . . . C 3 18.231 30.366 19.833 1 57.99 ? P2B NAP 164 A 1 HETATM 46 O O1X NAP . . . C 3 18.741 29.292 18.811 1 62.16 ? O1X NAP 164 A 1 HETATM 47 O O2X NAP . . . C 3 17.659 31.541 19.082 1 62.59 ? O2X NAP 164 A 1 HETATM 48 O O3X NAP . . . C 3 19.461 30.826 20.586 1 59.7 ? O3X NAP 164 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 36 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 48 #