data_7DFW # _model_server_result.job_id pNGJh-gO7GGmCZUmQimv0g _model_server_result.datetime_utc '2025-03-04 13:33:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7dfw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":1311}' # _entry.id 7DFW # _exptl.entry_id 7DFW _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 386.654 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CHOLESTEROL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7DFW _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7DFW _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 8 N N N ? 8 O N N ? 8 P N N ? 8 Q N N ? 8 R N N ? 8 S N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide 4 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 3 3 2 NAG NAG C1 O1 . O4 HO4 . sing 4 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 5 ? 4 3 2 NAG NAG C1 O1 . O3 HO3 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 I 1 NAG I 1 NAG 2 n B NAG 2 I 2 NAG I 2 NAG 3 n C NAG 1 L 1 NAG L 1 NAG 3 n C NAG 2 L 2 NAG L 2 NAG 3 n C NAG 3 L 3 NAG L 3 NAG 4 n D NAG 1 S 1 NAG S 1 NAG 4 n D NAG 2 S 2 NAG S 2 NAG 4 n D NAG 3 S 3 NAG S 3 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 471 A CYS 471 1_555 A SG CYS 485 A CYS 485 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 525 A CYS 525 1_555 A SG CYS 542 A CYS 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 A SG CYS 920 A CYS 920 1_555 A SG CYS 925 A CYS 925 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf4 A SG CYS 967 A CYS 967 1_555 A SG CYS 993 A CYS 993 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf5 A SG CYS 980 A CYS 980 1_555 A SG CYS 989 A CYS 989 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? covale ? covale1 A ND2 ASN 416 A ASN 416 1_555 H C1 NAG . A NAG 1304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale2 A ND2 ASN 431 A ASN 431 1_555 E C1 NAG . A NAG 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale3 A ND2 ASN 464 A ASN 464 1_555 F C1 NAG . A NAG 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.426 ? covale ? covale4 A ND2 ASN 479 A ASN 479 1_555 I C1 NAG . A NAG 1305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale5 A ND2 ASN 497 A ASN 497 1_555 B C1 NAG . I NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale6 A ND2 ASN 506 A ASN 506 1_555 G C1 NAG . A NAG 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale7 A ND2 ASN 909 A ASN 909 1_555 C C1 NAG . L NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale8 A ND2 ASN 927 A ASN 927 1_555 J C1 NAG . A NAG 1306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale9 A ND2 ASN 1037 A ASN 1037 1_555 D C1 NAG . S NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale10 A ND2 ASN 1075 A ASN 1075 1_555 K C1 NAG . A NAG 1307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale11 B O4 NAG . I NAG 1 1_555 B C1 NAG . I NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale12 C O4 NAG . L NAG 1 1_555 C C1 NAG . L NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale13 C O4 NAG . L NAG 2 1_555 C C1 NAG . L NAG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale14 D O4 NAG . S NAG 1 1_555 D C1 NAG . S NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale15 D O3 NAG . S NAG 2 1_555 D C1 NAG . S NAG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? # _chem_comp.formula 'C27 H46 O' _chem_comp.formula_weight 386.654 _chem_comp.id CLR _chem_comp.mon_nstd_flag . _chem_comp.name CHOLESTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CLR sing 70 n n C1 C10 CLR sing 71 n n C1 H11 CLR sing 72 n n C1 H12 CLR sing 73 n n C2 C3 CLR sing 74 n n C2 H21 CLR sing 75 n n C2 H22 CLR sing 76 n n C3 C4 CLR sing 77 n n C3 O1 CLR sing 78 n n C3 H3 CLR sing 79 n n C4 C5 CLR sing 80 n n C4 H41 CLR sing 81 n n C4 H42 CLR sing 82 n n C5 C6 CLR doub 83 n n C5 C10 CLR sing 84 n n C6 C7 CLR sing 85 n n C6 H6 CLR sing 86 n n C7 C8 CLR sing 87 n n C7 H71 CLR sing 88 n n C7 H72 CLR sing 89 n n C8 C9 CLR sing 90 n n C8 C14 CLR sing 91 n n C8 H8 CLR sing 92 n n C9 C10 CLR sing 93 n n C9 C11 CLR sing 94 n n C9 H9 CLR sing 95 n n C10 C19 CLR sing 96 n n C11 C12 CLR sing 97 n n C11 H111 CLR sing 98 n n C11 H112 CLR sing 99 n n C12 C13 CLR sing 100 n n C12 H121 CLR sing 101 n n C12 H122 CLR sing 102 n n C13 C14 CLR sing 103 n n C13 C17 CLR sing 104 n n C13 C18 CLR sing 105 n n C14 C15 CLR sing 106 n n C14 H14 CLR sing 107 n n C15 C16 CLR sing 108 n n C15 H151 CLR sing 109 n n C15 H152 CLR sing 110 n n C16 C17 CLR sing 111 n n C16 H161 CLR sing 112 n n C16 H162 CLR sing 113 n n C17 C20 CLR sing 114 n n C17 H17 CLR sing 115 n n C18 H181 CLR sing 116 n n C18 H182 CLR sing 117 n n C18 H183 CLR sing 118 n n C19 H191 CLR sing 119 n n C19 H192 CLR sing 120 n n C19 H193 CLR sing 121 n n C20 C21 CLR sing 122 n n C20 C22 CLR sing 123 n n C20 H20 CLR sing 124 n n C21 H211 CLR sing 125 n n C21 H212 CLR sing 126 n n C21 H213 CLR sing 127 n n C22 C23 CLR sing 128 n n C22 H221 CLR sing 129 n n C22 H222 CLR sing 130 n n C23 C24 CLR sing 131 n n C23 H231 CLR sing 132 n n C23 H232 CLR sing 133 n n C24 C25 CLR sing 134 n n C24 H241 CLR sing 135 n n C24 H242 CLR sing 136 n n C25 C26 CLR sing 137 n n C25 C27 CLR sing 138 n n C25 H25 CLR sing 139 n n C26 H261 CLR sing 140 n n C26 H262 CLR sing 141 n n C26 H263 CLR sing 142 n n C27 H271 CLR sing 143 n n C27 H272 CLR sing 144 n n C27 H273 CLR sing 145 n n O1 H1 CLR sing 146 n n # _atom_sites.entry_id 7DFW _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 NAG A 1 1301 1402 NAG NAG . F 5 NAG A 1 1302 1403 NAG NAG . G 5 NAG A 1 1303 1404 NAG NAG . H 5 NAG A 1 1304 1405 NAG NAG . I 5 NAG A 1 1305 1406 NAG NAG . J 5 NAG A 1 1306 1407 NAG NAG . K 5 NAG A 1 1307 1408 NAG NAG . L 6 P5S A 1 1308 1401 P5S P5S . M 7 LMT A 1 1309 1409 LMT LMT . N 8 CLR A 1 1310 1410 CLR CLR . O 8 CLR A 1 1311 1411 CLR CLR . P 8 CLR A 1 1312 1412 CLR CLR . Q 8 CLR A 1 1313 1413 CLR CLR . R 8 CLR A 1 1314 1414 CLR CLR . S 8 CLR A 1 1315 1415 CLR CLR . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CLR . . . O 8 184.583 189.956 180.139 1 58.43 0 C1 CLR 1311 A 1 HETATM 2 C C2 CLR . . . O 8 184.496 190.784 181.422 1 58.43 0 C2 CLR 1311 A 1 HETATM 3 C C3 CLR . . . O 8 185.413 190.239 182.488 1 58.43 0 C3 CLR 1311 A 1 HETATM 4 C C4 CLR . . . O 8 186.836 190.222 181.968 1 58.43 0 C4 CLR 1311 A 1 HETATM 5 C C5 CLR . . . O 8 186.955 189.436 180.68 1 58.43 0 C5 CLR 1311 A 1 HETATM 6 C C6 CLR . . . O 8 187.826 188.446 180.57 1 58.43 0 C6 CLR 1311 A 1 HETATM 7 C C7 CLR . . . O 8 188.088 187.67 179.319 1 58.43 0 C7 CLR 1311 A 1 HETATM 8 C C8 CLR . . . O 8 187.439 188.295 178.089 1 58.43 0 C8 CLR 1311 A 1 HETATM 9 C C9 CLR . . . O 8 186.017 188.77 178.434 1 58.43 0 C9 CLR 1311 A 1 HETATM 10 C C10 CLR . . . O 8 186.011 189.848 179.555 1 58.43 0 C10 CLR 1311 A 1 HETATM 11 C C11 CLR . . . O 8 185.253 189.218 177.178 1 58.43 0 C11 CLR 1311 A 1 HETATM 12 C C12 CLR . . . O 8 185.253 188.165 176.063 1 58.43 0 C12 CLR 1311 A 1 HETATM 13 C C13 CLR . . . O 8 186.68 187.768 175.673 1 58.43 0 C13 CLR 1311 A 1 HETATM 14 C C14 CLR . . . O 8 187.367 187.277 176.961 1 58.43 0 C14 CLR 1311 A 1 HETATM 15 C C15 CLR . . . O 8 188.657 186.623 176.478 1 58.43 0 C15 CLR 1311 A 1 HETATM 16 C C16 CLR . . . O 8 188.27 185.993 175.127 1 58.43 0 C16 CLR 1311 A 1 HETATM 17 C C17 CLR . . . O 8 186.841 186.496 174.791 1 58.43 0 C17 CLR 1311 A 1 HETATM 18 C C18 CLR . . . O 8 187.424 188.954 175.039 1 58.43 0 C18 CLR 1311 A 1 HETATM 19 C C19 CLR . . . O 8 186.47 191.221 179.033 1 58.43 0 C19 CLR 1311 A 1 HETATM 20 C C20 CLR . . . O 8 186.591 186.562 173.275 1 58.43 0 C20 CLR 1311 A 1 HETATM 21 C C21 CLR . . . O 8 185.111 186.571 172.905 1 58.43 0 C21 CLR 1311 A 1 HETATM 22 C C22 CLR . . . O 8 187.33 185.413 172.575 1 58.43 0 C22 CLR 1311 A 1 HETATM 23 C C23 CLR . . . O 8 187.379 185.493 171.071 1 58.43 0 C23 CLR 1311 A 1 HETATM 24 C C24 CLR . . . O 8 188.316 184.488 170.438 1 58.43 0 C24 CLR 1311 A 1 HETATM 25 C C25 CLR . . . O 8 187.741 183.099 170.143 1 58.43 0 C25 CLR 1311 A 1 HETATM 26 C C26 CLR . . . O 8 188.612 182.353 169.146 1 58.43 0 C26 CLR 1311 A 1 HETATM 27 C C27 CLR . . . O 8 187.579 182.267 171.406 1 58.43 0 C27 CLR 1311 A 1 HETATM 28 O O1 CLR . . . O 8 185.331 191.047 183.67 1 58.43 0 O1 CLR 1311 A 1 # _model_server_stats.io_time_ms 124 _model_server_stats.parse_time_ms 153 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 28 #