data_7DGC # _model_server_result.job_id YHvFcN5jzn4tKR9C2yhirg _model_server_result.datetime_utc '2024-10-20 01:22:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7dgc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":203}' # _entry.id 7DGC # _exptl.entry_id 7DGC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7DGC _cell.length_a 119.052 _cell.length_b 119.052 _cell.length_c 39.809 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7DGC _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall 'P 61' _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O SER 42 A SER 66 1_555 E NA NA . A NA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc2 A ND1 HIS 56 A HIS 80 1_555 D ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? metalc ? metalc3 A SG CYS 86 A CYS 110 1_555 D ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc4 A SG CYS 89 A CYS 113 1_555 D ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? metalc ? metalc5 C O21 H5C . A H5C 201 1_555 D ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc6 E NA NA . A NA 203 1_555 H O HOH . A HOH 346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.469 ? metalc ? metalc7 E NA NA . A NA 203 1_555 H O HOH . A HOH 356 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.676 ? metalc ? metalc8 B ND1 HIS 56 D HIS 80 1_555 G ZN ZN . D ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? metalc ? metalc9 B SG CYS 86 D CYS 110 1_555 G ZN ZN . D ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? metalc ? metalc10 B SG CYS 89 D CYS 113 1_555 G ZN ZN . D ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? metalc ? metalc11 F O21 H5C . D H5C 201 1_555 G ZN ZN . D ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7DGC _atom_sites.fract_transf_matrix[1][1] 0.0084 _atom_sites.fract_transf_matrix[1][2] 0.00485 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009699 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02512 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 H5C A 1 201 4 H5C M2X . D 3 ZN A 1 202 2 ZN ZN . E 4 NA A 1 203 1 NA NA . F 2 H5C D 1 201 3 H5C M2X . G 3 ZN D 1 202 1 ZN ZN . H 5 HOH A 1 301 31 HOH HOH . H 5 HOH A 2 302 138 HOH HOH . H 5 HOH A 3 303 37 HOH HOH . H 5 HOH A 4 304 38 HOH HOH . H 5 HOH A 5 305 8 HOH HOH . H 5 HOH A 6 306 49 HOH HOH . H 5 HOH A 7 307 46 HOH HOH . H 5 HOH A 8 308 100 HOH HOH . H 5 HOH A 9 309 4 HOH HOH . H 5 HOH A 10 310 124 HOH HOH . H 5 HOH A 11 311 3 HOH HOH . H 5 HOH A 12 312 119 HOH HOH . H 5 HOH A 13 313 59 HOH HOH . H 5 HOH A 14 314 29 HOH HOH . H 5 HOH A 15 315 71 HOH HOH . H 5 HOH A 16 316 14 HOH HOH . H 5 HOH A 17 317 51 HOH HOH . H 5 HOH A 18 318 18 HOH HOH . H 5 HOH A 19 319 7 HOH HOH . H 5 HOH A 20 320 32 HOH HOH . H 5 HOH A 21 321 128 HOH HOH . H 5 HOH A 22 322 34 HOH HOH . H 5 HOH A 23 323 20 HOH HOH . H 5 HOH A 24 324 97 HOH HOH . H 5 HOH A 25 325 75 HOH HOH . H 5 HOH A 26 326 70 HOH HOH . H 5 HOH A 27 327 6 HOH HOH . H 5 HOH A 28 328 65 HOH HOH . H 5 HOH A 29 329 47 HOH HOH . H 5 HOH A 30 330 99 HOH HOH . H 5 HOH A 31 331 118 HOH HOH . H 5 HOH A 32 332 110 HOH HOH . H 5 HOH A 33 333 88 HOH HOH . H 5 HOH A 34 334 120 HOH HOH . H 5 HOH A 35 335 72 HOH HOH . H 5 HOH A 36 336 62 HOH HOH . H 5 HOH A 37 337 50 HOH HOH . H 5 HOH A 38 338 74 HOH HOH . H 5 HOH A 39 339 15 HOH HOH . H 5 HOH A 40 340 63 HOH HOH . H 5 HOH A 41 341 106 HOH HOH . H 5 HOH A 42 342 102 HOH HOH . H 5 HOH A 43 343 127 HOH HOH . H 5 HOH A 44 344 73 HOH HOH . H 5 HOH A 45 345 27 HOH HOH . H 5 HOH A 46 346 68 HOH HOH . H 5 HOH A 47 347 21 HOH HOH . H 5 HOH A 48 348 41 HOH HOH . H 5 HOH A 49 349 82 HOH HOH . H 5 HOH A 50 350 12 HOH HOH . H 5 HOH A 51 351 115 HOH HOH . H 5 HOH A 52 352 44 HOH HOH . H 5 HOH A 53 353 133 HOH HOH . H 5 HOH A 54 354 60 HOH HOH . H 5 HOH A 55 355 101 HOH HOH . H 5 HOH A 56 356 92 HOH HOH . H 5 HOH A 57 357 77 HOH HOH . H 5 HOH A 58 358 109 HOH HOH . H 5 HOH A 59 359 136 HOH HOH . H 5 HOH A 60 360 45 HOH HOH . H 5 HOH A 61 361 117 HOH HOH . H 5 HOH A 62 362 132 HOH HOH . I 5 HOH D 1 301 13 HOH HOH . I 5 HOH D 2 302 137 HOH HOH . I 5 HOH D 3 303 131 HOH HOH . I 5 HOH D 4 304 130 HOH HOH . I 5 HOH D 5 305 98 HOH HOH . I 5 HOH D 6 306 52 HOH HOH . I 5 HOH D 7 307 104 HOH HOH . I 5 HOH D 8 308 35 HOH HOH . I 5 HOH D 9 309 2 HOH HOH . I 5 HOH D 10 310 56 HOH HOH . I 5 HOH D 11 311 1 HOH HOH . I 5 HOH D 12 312 58 HOH HOH . I 5 HOH D 13 313 22 HOH HOH . I 5 HOH D 14 314 57 HOH HOH . I 5 HOH D 15 315 25 HOH HOH . I 5 HOH D 16 316 114 HOH HOH . I 5 HOH D 17 317 54 HOH HOH . I 5 HOH D 18 318 67 HOH HOH . I 5 HOH D 19 319 24 HOH HOH . I 5 HOH D 20 320 5 HOH HOH . I 5 HOH D 21 321 94 HOH HOH . I 5 HOH D 22 322 11 HOH HOH . I 5 HOH D 23 323 81 HOH HOH . I 5 HOH D 24 324 30 HOH HOH . I 5 HOH D 25 325 93 HOH HOH . I 5 HOH D 26 326 134 HOH HOH . I 5 HOH D 27 327 78 HOH HOH . I 5 HOH D 28 328 42 HOH HOH . I 5 HOH D 29 329 16 HOH HOH . I 5 HOH D 30 330 33 HOH HOH . I 5 HOH D 31 331 28 HOH HOH . I 5 HOH D 32 332 10 HOH HOH . I 5 HOH D 33 333 96 HOH HOH . I 5 HOH D 34 334 26 HOH HOH . I 5 HOH D 35 335 39 HOH HOH . I 5 HOH D 36 336 17 HOH HOH . I 5 HOH D 37 337 105 HOH HOH . I 5 HOH D 38 338 76 HOH HOH . I 5 HOH D 39 339 40 HOH HOH . I 5 HOH D 40 340 9 HOH HOH . I 5 HOH D 41 341 129 HOH HOH . I 5 HOH D 42 342 48 HOH HOH . I 5 HOH D 43 343 107 HOH HOH . I 5 HOH D 44 344 36 HOH HOH . I 5 HOH D 45 345 66 HOH HOH . I 5 HOH D 46 346 55 HOH HOH . I 5 HOH D 47 347 64 HOH HOH . I 5 HOH D 48 348 87 HOH HOH . I 5 HOH D 49 349 84 HOH HOH . I 5 HOH D 50 350 108 HOH HOH . I 5 HOH D 51 351 61 HOH HOH . I 5 HOH D 52 352 95 HOH HOH . I 5 HOH D 53 353 90 HOH HOH . I 5 HOH D 54 354 79 HOH HOH . I 5 HOH D 55 355 69 HOH HOH . I 5 HOH D 56 356 85 HOH HOH . I 5 HOH D 57 357 91 HOH HOH . I 5 HOH D 58 358 89 HOH HOH . I 5 HOH D 59 359 126 HOH HOH . I 5 HOH D 60 360 111 HOH HOH . I 5 HOH D 61 361 86 HOH HOH . I 5 HOH D 62 362 80 HOH HOH . I 5 HOH D 63 363 135 HOH HOH . I 5 HOH D 64 364 123 HOH HOH . I 5 HOH D 65 365 83 HOH HOH . I 5 HOH D 66 366 103 HOH HOH . I 5 HOH D 67 367 53 HOH HOH . I 5 HOH D 68 368 113 HOH HOH . I 5 HOH D 69 369 125 HOH HOH . I 5 HOH D 70 370 121 HOH HOH . I 5 HOH D 71 371 122 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 4 _atom_site.Cartn_x -32.013 _atom_site.Cartn_y -35.732 _atom_site.Cartn_z -8.337 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 52.83 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 203 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #