data_7DGQ # _model_server_result.job_id CPC0YKti_exaW3qllAKxJA _model_server_result.datetime_utc '2025-03-01 19:30:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7dgq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"OC","auth_seq_id":301}' # _entry.id 7DGQ # _exptl.entry_id 7DGQ _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 24.305 _entity.id 77 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7DGQ _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7DGQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 80-meric _pdbx_struct_assembly.oligomeric_count 80 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB,AC,BC,CC,DC,EC,FC,GC,HC,IC,JC,KC,LC,MC,NC,OC,PC,QC,RC,SC,TC,UC,VC,WC,XC,YC,ZC,AD,BD,CD,DD,ED,FD,GD,HD,ID,JD,KD,LD,MD,ND,OD _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 77 _struct_asym.id OC _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 Q SG CYS 30 C0 CYS 29 1_555 Q SG CYS 65 C0 CYS 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? disulf ? disulf2 Q SG CYS 40 C0 CYS 39 1_555 Q SG CYS 54 C0 CYS 53 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? disulf ? disulf3 DA SG CYS 32 H CYS 33 1_555 DA SG CYS 65 H CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf4 DA SG CYS 42 H CYS 43 1_555 DA SG CYS 55 H CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf5 LA SG CYS 45 Q CYS 46 1_555 LA SG CYS 55 Q CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf6 LA SG CYS 87 Q CYS 88 1_555 LA SG CYS 99 Q CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf7 OA SG CYS 17 T CYS 18 1_555 OA SG CYS 74 T CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf8 OA SG CYS 94 T CYS 95 1_555 OA SG CYS 114 T CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? disulf ? disulf9 YA SG CYS 58 d CYS 59 1_555 YA SG CYS 89 d CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf10 DB SG CYS 113 g CYS 113 1_555 DB SG CYS 125 g CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf11 NB SG CYS 37 s CYS 24 1_555 NB SG CYS 81 s CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf12 NB SG CYS 53 s CYS 40 1_555 NB SG CYS 67 s CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf13 YB SG CYS 37 B7 CYS 24 1_555 YB SG CYS 81 B7 CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf14 YB SG CYS 53 B7 CYS 40 1_555 YB SG CYS 67 B7 CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc1 J NE2 HIS 61 C3 HIS 61 1_555 MC FE HEA . C3 HEA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.834 ? metalc ? metalc2 J ND1 HIS 240 C3 HIS 240 1_555 LC CU CU . C3 CU 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.85 ? metalc ? metalc3 J NE2 HIS 290 C3 HIS 290 1_555 LC CU CU . C3 CU 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? metalc ? metalc4 J NE2 HIS 291 C3 HIS 291 1_555 LC CU CU . C3 CU 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? metalc ? metalc5 J OD2 ASP 369 C3 ASP 369 1_555 OC MG MG . C1 MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.529 ? metalc ? metalc6 J NE2 HIS 376 C3 HIS 376 1_555 NC FE HEA . C3 HEA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? metalc ? metalc7 J NE2 HIS 378 C3 HIS 378 1_555 MC FE HEA . C3 HEA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.9 ? metalc ? metalc8 K ND1 HIS 161 C1 HIS 161 1_555 PC CU CU . C1 CU 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.89 ? metalc ? metalc9 K SG CYS 196 C1 CYS 196 1_555 PC CU CU . C1 CU 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc10 K SG CYS 196 C1 CYS 196 1_555 QC CU CU . C1 CU 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc11 K OE1 GLU 198 C1 GLU 198 1_555 OC MG MG . C1 MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.497 ? metalc ? metalc12 K O GLU 198 C1 GLU 198 1_555 QC CU CU . C1 CU 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? metalc ? metalc13 K SG CYS 200 C1 CYS 200 1_555 PC CU CU . C1 CU 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc14 K SG CYS 200 C1 CYS 200 1_555 QC CU CU . C1 CU 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? metalc ? metalc15 K ND1 HIS 204 C1 HIS 204 1_555 QC CU CU . C1 CU 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.92 ? metalc ? metalc16 K SD MET 207 C1 MET 207 1_555 PC CU CU . C1 CU 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.475 ? metalc ? metalc17 PC CU CU . C1 CU 302 1_555 QC CU CU . C1 CU 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? metalc ? metalc18 O SG CYS 91 A5 CYS 60 1_555 RC ZN ZN . A5 ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? metalc ? metalc19 O SG CYS 93 A5 CYS 62 1_555 RC ZN ZN . A5 ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.497 ? metalc ? metalc20 O SG CYS 113 A5 CYS 82 1_555 RC ZN ZN . A5 ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? metalc ? metalc21 O SG CYS 116 A5 CYS 85 1_555 RC ZN ZN . A5 ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? metalc ? metalc22 W N CYS 41 A CYS 64 1_555 UC FE1 FES . A FES 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.791 ? metalc ? metalc23 W SG CYS 55 A CYS 78 1_555 UC FE2 FES . A FES 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.617 ? metalc ? metalc24 W NE2 HIS 101 A HIS 124 1_555 SC FE4 SF4 . A SF4 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.469 ? metalc ? metalc25 W SG CYS 114 A CYS 137 1_555 SC FE1 SF4 . A SF4 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.676 ? metalc ? metalc26 Z SG CYS 55 D CYS 92 1_555 WC FE3 SF4 . D SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.561 ? metalc ? metalc27 Z SG CYS 119 D CYS 156 1_555 WC FE2 SF4 . D SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.611 ? metalc ? metalc28 AA SG CYS 83 E CYS 119 1_555 YC FE2 SF4 . E SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.684 ? metalc ? metalc29 AA SG CYS 87 E CYS 123 1_555 XC FE4 SF4 . E SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.495 ? metalc ? metalc30 AA SG CYS 116 E CYS 152 1_555 XC FE1 SF4 . E SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.693 ? metalc ? metalc31 AA N CYS 119 E CYS 155 1_555 XC FE2 SF4 . E SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.666 ? metalc ? metalc32 AA SG CYS 122 E CYS 158 1_555 XC FE3 SF4 . E SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.628 ? metalc ? metalc33 AA SG CYS 126 E CYS 162 1_555 YC FE3 SF4 . E SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.601 ? metalc ? metalc34 EA SG CYS 59 I CYS 87 1_555 ZC ZN ZN . I ZN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? metalc ? metalc35 EA NE2 HIS 68 I HIS 96 1_555 ZC ZN ZN . I ZN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? metalc ? metalc36 EA SG CYS 87 I CYS 115 1_555 ZC ZN ZN . I ZN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? metalc ? metalc37 IB NE2 HIS 83 m HIS 83 1_555 HD FE HEM . m HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc38 IB NE2 HIS 97 m HIS 97 1_555 ID FE HEM . m HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc39 IB NE2 HIS 182 m HIS 182 1_555 HD FE HEM . m HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? metalc ? metalc40 IB NE2 HIS 196 m HIS 196 1_555 ID FE HEM . m HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc41 JB NE2 HIS 125 o HIS 41 1_555 KD FE HEC . o HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? metalc ? metalc42 TB NE2 HIS 83 y HIS 83 1_555 LD FE HEM . y HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc43 TB NE2 HIS 97 y HIS 97 1_555 MD FE HEM . y HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc44 TB NE2 HIS 182 y HIS 182 1_555 LD FE HEM . y HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? metalc ? metalc45 TB NE2 HIS 196 y HIS 196 1_555 MD FE HEM . y HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc46 UB NE2 HIS 125 z HIS 41 1_555 ND FE HEC . z HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7DGQ _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code CC 69 PC1 3 1 200 200 PC1 PC1 . DC 70 3PE 1 1 401 401 3PE 3PE . EC 71 FES 9 1 301 301 FES FES . FC 70 3PE 4 1 501 501 3PE 3PE . GC 72 CDL 6 1 701 701 CDL CDL . HC 70 3PE 2 1 401 401 3PE 3PE . IC 69 PC1 2 1 402 402 PC1 PC1 . JC 73 FMN 8 1 501 501 FMN FMN . KC 74 SF4 8 1 502 502 SF4 SF4 . LC 75 CU C3 1 601 601 CU CU . MC 76 HEA C3 1 602 602 HEA HEA . NC 76 HEA C3 1 603 603 HEA HEA . OC 77 MG C1 1 301 301 MG MG . PC 75 CU C1 1 302 302 CU CU . QC 75 CU C1 1 303 303 CU CU . RC 78 ZN A5 1 101 101 ZN ZN . SC 74 SF4 A 1 801 801 SF4 SF4 . TC 74 SF4 A 1 802 802 SF4 SF4 . UC 71 FES A 1 803 803 FES FES . VC 70 3PE B 1 501 501 3PE 3PE . WC 74 SF4 D 1 301 301 SF4 SF4 . XC 74 SF4 E 1 301 301 SF4 SF4 . YC 74 SF4 E 1 302 302 SF4 SF4 . ZC 78 ZN I 1 300 300 ZN ZN . AD 72 CDL J 1 101 101 CDL CDL . BD 69 PC1 Q 1 201 201 PC1 PC1 . CD 79 NAP R 1 601 601 NAP NAP . DD 69 PC1 S 1 401 401 PC1 PC1 . ED 72 CDL b 1 201 201 CDL CDL . FD 69 PC1 j 1 201 201 PC1 PC1 . GD 70 3PE j 1 202 202 3PE 3PE . HD 80 HEM m 1 401 401 HEM HEM . ID 80 HEM m 1 402 402 HEM HEM . JD 71 FES m 1 403 403 FES FES . KD 81 HEC o 1 301 301 HEC HEC . LD 80 HEM y 1 401 401 HEM HEM . MD 80 HEM y 1 402 402 HEM HEM . ND 81 HEC z 1 301 301 HEC HEC . OD 82 UQ2 A2 1 201 201 UQ2 UQ2 . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id OC _atom_site.label_entity_id 77 _atom_site.Cartn_x 220.146 _atom_site.Cartn_y 302.49 _atom_site.Cartn_z 252.279 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 11.98 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 301 _atom_site.auth_asym_id C1 _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 149 _model_server_stats.query_time_ms 261 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #