data_7DGS # _model_server_result.job_id 9OVf9WEKcrOUYMCXpG5xbg _model_server_result.datetime_utc '2025-03-06 02:37:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7dgs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"CC","auth_seq_id":301}' # _entry.id 7DGS # _exptl.entry_id 7DGS _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 175.82 _entity.id 69 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FE2/S2 (INORGANIC) CLUSTER' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7DGS _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7DGS _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 80-meric _pdbx_struct_assembly.oligomeric_count 80 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB,AC,BC,CC,DC,EC,FC,GC,HC,IC,JC,KC,LC,MC,NC,OC,PC,QC,RC,SC,TC,UC,VC,WC,XC,YC,ZC,AD,BD,CD,DD,ED,FD,GD,HD,ID,JD,KD,LD,MD,ND _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 69 CC N N ? 69 MC N N ? 69 CD N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 Q SG CYS 32 H CYS 33 1_555 Q SG CYS 65 H CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf2 Q SG CYS 42 H CYS 43 1_555 Q SG CYS 55 H CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 Y SG CYS 45 Q CYS 46 1_555 Y SG CYS 55 Q CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf4 Y SG CYS 87 Q CYS 88 1_555 Y SG CYS 99 Q CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf5 BA SG CYS 17 T CYS 18 1_555 BA SG CYS 74 T CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf6 BA SG CYS 94 T CYS 95 1_555 BA SG CYS 114 T CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf7 LA SG CYS 58 d CYS 59 1_555 LA SG CYS 89 d CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf8 QA SG CYS 113 g CYS 113 1_555 QA SG CYS 125 g CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf9 AB SG CYS 37 s CYS 24 1_555 AB SG CYS 81 s CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf10 AB SG CYS 53 s CYS 40 1_555 AB SG CYS 67 s CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf11 LB SG CYS 37 B5 CYS 24 1_555 LB SG CYS 81 B5 CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf12 LB SG CYS 53 B5 CYS 40 1_555 LB SG CYS 67 B5 CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf13 WB SG CYS 30 A5 CYS 29 1_555 WB SG CYS 65 A5 CYS 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? disulf ? disulf14 WB SG CYS 40 A5 CYS 39 1_555 WB SG CYS 54 A5 CYS 53 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? covale ? covale1 K NH1 ARG 233 B ARG 266 1_555 NC O22 3PE . B 3PE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.297 ? metalc ? metalc1 R NE2 HIS 68 I HIS 96 1_555 RC ZN ZN . I ZN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc2 R SG CYS 87 I CYS 115 1_555 RC ZN ZN . I ZN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.508 ? metalc ? metalc3 VA NE2 HIS 83 m HIS 83 1_555 AD FE HEM . m HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? metalc ? metalc4 VA NE2 HIS 97 m HIS 97 1_555 BD FE HEM . m HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc5 VA NE2 HIS 182 m HIS 182 1_555 AD FE HEM . m HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.582 ? metalc ? metalc6 VA NE2 HIS 196 m HIS 196 1_555 BD FE HEM . m HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.47 ? metalc ? metalc7 WA NE2 HIS 125 o HIS 41 1_555 DD FE HEC . o HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? metalc ? metalc8 GB NE2 HIS 83 y HIS 83 1_555 ED FE HEM . y HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? metalc ? metalc9 GB NE2 HIS 97 y HIS 97 1_555 FD FE HEM . y HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc10 GB NE2 HIS 182 y HIS 182 1_555 ED FE HEM . y HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.583 ? metalc ? metalc11 GB NE2 HIS 196 y HIS 196 1_555 FD FE HEM . y HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? metalc ? metalc12 HB NE2 HIS 125 z HIS 41 1_555 GD FE HEC . z HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.47 ? metalc ? metalc13 PB NE2 HIS 61 A9 HIS 61 1_555 HD FE HEA . A9 HEA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.834 ? metalc ? metalc14 PB ND1 HIS 240 A9 HIS 240 1_555 JD CU CU . A9 CU 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.851 ? metalc ? metalc15 PB NE2 HIS 290 A9 HIS 290 1_555 JD CU CU . A9 CU 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? metalc ? metalc16 PB NE2 HIS 291 A9 HIS 291 1_555 JD CU CU . A9 CU 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc17 PB OD2 ASP 369 A9 ASP 369 1_555 KD MG MG . A9 MG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.529 ? metalc ? metalc18 PB NE2 HIS 376 A9 HIS 376 1_555 ID FE HEA . A9 HEA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? metalc ? metalc19 PB NE2 HIS 378 A9 HIS 378 1_555 HD FE HEA . A9 HEA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.9 ? metalc ? metalc20 KD MG MG . A9 MG 604 1_555 QB OE1 GLU 198 B9 GLU 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.497 ? metalc ? metalc21 QB ND1 HIS 161 B9 HIS 161 1_555 LD CU CU . B9 CU 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.89 ? metalc ? metalc22 QB SG CYS 196 B9 CYS 196 1_555 LD CU CU . B9 CU 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc23 QB SG CYS 196 B9 CYS 196 1_555 MD CU CU . B9 CU 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc24 QB O GLU 198 B9 GLU 198 1_555 MD CU CU . B9 CU 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? metalc ? metalc25 QB SG CYS 200 B9 CYS 200 1_555 LD CU CU . B9 CU 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc26 QB SG CYS 200 B9 CYS 200 1_555 MD CU CU . B9 CU 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? metalc ? metalc27 QB ND1 HIS 204 B9 HIS 204 1_555 MD CU CU . B9 CU 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.92 ? metalc ? metalc28 QB SD MET 207 B9 MET 207 1_555 LD CU CU . B9 CU 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.475 ? metalc ? metalc29 LD CU CU . B9 CU 301 1_555 MD CU CU . B9 CU 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? metalc ? metalc30 UB SG CYS 91 B2 CYS 60 1_555 ND ZN ZN . B2 ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? metalc ? metalc31 UB SG CYS 93 B2 CYS 62 1_555 ND ZN ZN . B2 ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.497 ? metalc ? metalc32 UB SG CYS 113 B2 CYS 82 1_555 ND ZN ZN . B2 ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.462 ? metalc ? metalc33 UB SG CYS 116 B2 CYS 85 1_555 ND ZN ZN . B2 ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? # _chem_comp.formula 'Fe2 S2' _chem_comp.formula_weight 175.82 _chem_comp.id FES _chem_comp.mon_nstd_flag . _chem_comp.name 'FE2/S2 (INORGANIC) CLUSTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7DGS _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code CC 69 FES 9 1 301 301 FES FES . DC 70 CDL 6 1 701 701 CDL CDL . EC 71 3PE 2 1 401 401 3PE 3PE . FC 72 PC1 2 1 402 402 PC1 PC1 . GC 70 CDL 4 1 501 501 CDL CDL . HC 71 3PE 4 1 502 502 3PE 3PE . IC 73 FMN 8 1 501 501 FMN FMN . JC 74 SF4 8 1 502 502 SF4 SF4 . KC 74 SF4 A 1 801 801 SF4 SF4 . LC 74 SF4 A 1 802 802 SF4 SF4 . MC 69 FES A 1 803 803 FES FES . NC 71 3PE B 1 501 501 3PE 3PE . OC 74 SF4 D 1 301 301 SF4 SF4 . PC 74 SF4 E 1 301 301 SF4 SF4 . QC 74 SF4 E 1 302 302 SF4 SF4 . RC 75 ZN I 1 300 300 ZN ZN . SC 70 CDL J 1 101 101 CDL CDL . TC 72 PC1 L 1 200 200 PC1 PC1 . UC 72 PC1 Q 1 201 201 PC1 PC1 . VC 76 NAP R 1 601 601 NAP NAP . WC 72 PC1 S 1 401 401 PC1 PC1 . XC 71 3PE V 1 201 201 3PE 3PE . YC 72 PC1 j 1 201 201 PC1 PC1 . ZC 71 3PE j 1 202 202 3PE 3PE . AD 77 HEM m 1 401 401 HEM HEM . BD 77 HEM m 1 402 402 HEM HEM . CD 69 FES m 1 403 403 FES FES . DD 78 HEC o 1 301 301 HEC HEC . ED 77 HEM y 1 401 401 HEM HEM . FD 77 HEM y 1 402 402 HEM HEM . GD 78 HEC z 1 301 301 HEC HEC . HD 79 HEA A9 1 601 601 HEA HEA . ID 79 HEA A9 1 602 602 HEA HEA . JD 80 CU A9 1 603 603 CU CU . KD 81 MG A9 1 604 604 MG MG . LD 80 CU B9 1 301 301 CU CU . MD 80 CU B9 1 302 302 CU CU . ND 75 ZN B2 1 101 101 ZN ZN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE1 FES . . . CC 69 112.757 64.228 128.904 1 93.33 ? FE1 FES 301 9 1 HETATM 2 FE FE2 FES . . . CC 69 110.358 64.046 130.863 1 93.33 ? FE2 FES 301 9 1 HETATM 3 S S1 FES . . . CC 69 112.286 65.085 130.864 1 93.33 ? S1 FES 301 9 1 HETATM 4 S S2 FES . . . CC 69 110.746 63.362 128.817 1 93.33 ? S2 FES 301 9 1 # _model_server_stats.io_time_ms 48 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 161 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 4 #