data_7DGZ # _model_server_result.job_id iAaCTKk0wnYEn23tajGm-A _model_server_result.datetime_utc '2025-03-06 02:46:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7dgz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"LB","auth_seq_id":401}' # _entry.id 7DGZ # _exptl.entry_id 7DGZ _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 790.145 _entity.id 51 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7DGZ _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7DGZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 45-meric _pdbx_struct_assembly.oligomeric_count 45 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 51 IB N N ? 51 JB N N ? 51 LB N N ? 51 NB N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 O SG CYS 32 H CYS 33 1_555 O SG CYS 65 H CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf2 O SG CYS 42 H CYS 43 1_555 O SG CYS 55 H CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 W SG CYS 45 Q CYS 46 1_555 W SG CYS 55 Q CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf4 W SG CYS 87 Q CYS 88 1_555 W SG CYS 99 Q CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 Z SG CYS 17 T CYS 18 1_555 Z SG CYS 74 T CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf6 Z SG CYS 94 T CYS 95 1_555 Z SG CYS 114 T CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf7 JA SG CYS 58 d CYS 59 1_555 JA SG CYS 89 d CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf8 QA SG CYS 113 g CYS 113 1_555 QA SG CYS 125 g CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? metalc ? metalc1 P NE2 HIS 68 I HIS 96 1_555 GB ZN ZN . I ZN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? metalc ? metalc2 P SG CYS 87 I CYS 115 1_555 GB ZN ZN . I ZN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.508 ? # _chem_comp.formula 'C44 H88 N O8 P' _chem_comp.formula_weight 790.145 _chem_comp.id PC1 _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 3-SN-PHOSPHATIDYLCHOLINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O12 P PC1 sing 760 n n P O14 PC1 doub 761 n n P O13 PC1 sing 762 n n P O11 PC1 sing 763 n n O13 C11 PC1 sing 764 n n C11 C12 PC1 sing 765 n n C11 H111 PC1 sing 766 n n C11 H112 PC1 sing 767 n n C12 N PC1 sing 768 n n C12 H121 PC1 sing 769 n n C12 H122 PC1 sing 770 n n N C13 PC1 sing 771 n n N C14 PC1 sing 772 n n N C15 PC1 sing 773 n n C13 H131 PC1 sing 774 n n C13 H132 PC1 sing 775 n n C13 H133 PC1 sing 776 n n C14 H141 PC1 sing 777 n n C14 H142 PC1 sing 778 n n C14 H143 PC1 sing 779 n n C15 H151 PC1 sing 780 n n C15 H152 PC1 sing 781 n n C15 H153 PC1 sing 782 n n O11 C1 PC1 sing 783 n n C1 C2 PC1 sing 784 n n C1 H11 PC1 sing 785 n n C1 H12 PC1 sing 786 n n C2 O21 PC1 sing 787 n n C2 C3 PC1 sing 788 n n C2 H2 PC1 sing 789 n n O21 C21 PC1 sing 790 n n C21 O22 PC1 doub 791 n n C21 C22 PC1 sing 792 n n C22 C23 PC1 sing 793 n n C22 H221 PC1 sing 794 n n C22 H222 PC1 sing 795 n n C23 C24 PC1 sing 796 n n C23 H231 PC1 sing 797 n n C23 H232 PC1 sing 798 n n C24 C25 PC1 sing 799 n n C24 H241 PC1 sing 800 n n C24 H242 PC1 sing 801 n n C25 C26 PC1 sing 802 n n C25 H251 PC1 sing 803 n n C25 H252 PC1 sing 804 n n C26 C27 PC1 sing 805 n n C26 H261 PC1 sing 806 n n C26 H262 PC1 sing 807 n n C27 C28 PC1 sing 808 n n C27 H271 PC1 sing 809 n n C27 H272 PC1 sing 810 n n C28 C29 PC1 sing 811 n n C28 H281 PC1 sing 812 n n C28 H282 PC1 sing 813 n n C29 C2A PC1 sing 814 n n C29 H291 PC1 sing 815 n n C29 H292 PC1 sing 816 n n C2A C2B PC1 sing 817 n n C2A H2A1 PC1 sing 818 n n C2A H2A2 PC1 sing 819 n n C2B C2C PC1 sing 820 n n C2B H2B1 PC1 sing 821 n n C2B H2B2 PC1 sing 822 n n C2C C2D PC1 sing 823 n n C2C H2C1 PC1 sing 824 n n C2C H2C2 PC1 sing 825 n n C2D C2E PC1 sing 826 n n C2D H2D1 PC1 sing 827 n n C2D H2D2 PC1 sing 828 n n C2E C2F PC1 sing 829 n n C2E H2E1 PC1 sing 830 n n C2E H2E2 PC1 sing 831 n n C2F C2G PC1 sing 832 n n C2F H2F1 PC1 sing 833 n n C2F H2F2 PC1 sing 834 n n C2G C2H PC1 sing 835 n n C2G H2G1 PC1 sing 836 n n C2G H2G2 PC1 sing 837 n n C2H C2I PC1 sing 838 n n C2H H2H1 PC1 sing 839 n n C2H H2H2 PC1 sing 840 n n C2I H2I1 PC1 sing 841 n n C2I H2I2 PC1 sing 842 n n C2I H2I3 PC1 sing 843 n n C3 O31 PC1 sing 844 n n C3 H31 PC1 sing 845 n n C3 H32 PC1 sing 846 n n O31 C31 PC1 sing 847 n n C31 O32 PC1 doub 848 n n C31 C32 PC1 sing 849 n n C32 C33 PC1 sing 850 n n C32 H321 PC1 sing 851 n n C32 H322 PC1 sing 852 n n C33 C34 PC1 sing 853 n n C33 H331 PC1 sing 854 n n C33 H332 PC1 sing 855 n n C34 C35 PC1 sing 856 n n C34 H341 PC1 sing 857 n n C34 H342 PC1 sing 858 n n C35 C36 PC1 sing 859 n n C35 H351 PC1 sing 860 n n C35 H352 PC1 sing 861 n n C36 C37 PC1 sing 862 n n C36 H361 PC1 sing 863 n n C36 H362 PC1 sing 864 n n C37 C38 PC1 sing 865 n n C37 H371 PC1 sing 866 n n C37 H372 PC1 sing 867 n n C38 C39 PC1 sing 868 n n C38 H381 PC1 sing 869 n n C38 H382 PC1 sing 870 n n C39 C3A PC1 sing 871 n n C39 H391 PC1 sing 872 n n C39 H392 PC1 sing 873 n n C3A C3B PC1 sing 874 n n C3A H3A1 PC1 sing 875 n n C3A H3A2 PC1 sing 876 n n C3B C3C PC1 sing 877 n n C3B H3B1 PC1 sing 878 n n C3B H3B2 PC1 sing 879 n n C3C C3D PC1 sing 880 n n C3C H3C1 PC1 sing 881 n n C3C H3C2 PC1 sing 882 n n C3D C3E PC1 sing 883 n n C3D H3D1 PC1 sing 884 n n C3D H3D2 PC1 sing 885 n n C3E C3F PC1 sing 886 n n C3E H3E1 PC1 sing 887 n n C3E H3E2 PC1 sing 888 n n C3F C3G PC1 sing 889 n n C3F H3F1 PC1 sing 890 n n C3F H3F2 PC1 sing 891 n n C3G C3H PC1 sing 892 n n C3G H3G1 PC1 sing 893 n n C3G H3G2 PC1 sing 894 n n C3H C3I PC1 sing 895 n n C3H H3H1 PC1 sing 896 n n C3H H3H2 PC1 sing 897 n n C3I H3I1 PC1 sing 898 n n C3I H3I2 PC1 sing 899 n n C3I H3I3 PC1 sing 900 n n # _atom_sites.entry_id 7DGZ _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code TA 45 3PE 2 1 401 401 3PE 3PE . UA 46 CDL 4 1 501 501 CDL CDL . VA 45 3PE 4 1 502 502 3PE 3PE . WA 47 FMN 8 1 501 501 FMN FMN . XA 48 SF4 8 1 502 502 SF4 SF4 . YA 49 FES 9 1 301 301 FES FES . ZA 48 SF4 A 1 801 801 SF4 SF4 . AB 48 SF4 A 1 802 802 SF4 SF4 . BB 49 FES A 1 803 803 FES FES . CB 45 3PE B 1 501 501 3PE 3PE . DB 48 SF4 D 1 301 301 SF4 SF4 . EB 48 SF4 E 1 301 301 SF4 SF4 . FB 48 SF4 E 1 302 302 SF4 SF4 . GB 50 ZN I 1 300 300 ZN ZN . HB 46 CDL J 1 101 101 CDL CDL . IB 51 PC1 L 1 200 200 PC1 PC1 . JB 51 PC1 Q 1 201 201 PC1 PC1 . KB 52 NAP R 1 601 601 NAP NAP . LB 51 PC1 S 1 401 401 PC1 PC1 . MB 45 3PE V 1 201 201 3PE 3PE . NB 51 PC1 j 1 201 201 PC1 PC1 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O12 PC1 . . . LB 51 209.542 122.099 200.089 1 81.19 ? O12 PC1 401 S 1 HETATM 2 P P PC1 . . . LB 51 208.84 121.662 201.348 1 81.19 ? P PC1 401 S 1 HETATM 3 O O14 PC1 . . . LB 51 208.469 120.204 201.26 1 81.19 ? O14 PC1 401 S 1 HETATM 4 O O13 PC1 . . . LB 51 207.465 122.542 201.552 1 81.19 ? O13 PC1 401 S 1 HETATM 5 C C11 PC1 . . . LB 51 207.483 123.585 202.481 1 81.19 ? C11 PC1 401 S 1 HETATM 6 C C12 PC1 . . . LB 51 206.615 124.727 201.957 1 81.19 ? C12 PC1 401 S 1 HETATM 7 N N PC1 . . . LB 51 207.37 125.943 201.687 1 81.19 ? N PC1 401 S 1 HETATM 8 C C13 PC1 . . . LB 51 208.071 126.395 202.878 1 81.19 ? C13 PC1 401 S 1 HETATM 9 C C14 PC1 . . . LB 51 208.326 125.713 200.616 1 81.19 ? C14 PC1 401 S 1 HETATM 10 C C15 PC1 . . . LB 51 206.442 126.981 201.274 1 81.19 ? C15 PC1 401 S 1 HETATM 11 O O11 PC1 . . . LB 51 209.867 121.909 202.609 1 81.19 ? O11 PC1 401 S 1 HETATM 12 C C1 PC1 . . . LB 51 210.051 120.88 203.533 1 81.19 ? C1 PC1 401 S 1 HETATM 13 C C2 PC1 . . . LB 51 209.475 121.349 204.86 1 81.19 ? C2 PC1 401 S 1 HETATM 14 O O21 PC1 . . . LB 51 210.502 121.905 205.628 1 81.19 ? O21 PC1 401 S 1 HETATM 15 C C21 PC1 . . . LB 51 210.387 123.287 205.828 1 81.19 ? C21 PC1 401 S 1 HETATM 16 O O22 PC1 . . . LB 51 209.407 123.871 205.504 1 81.19 ? O22 PC1 401 S 1 HETATM 17 C C22 PC1 . . . LB 51 211.537 124.058 206.465 1 81.19 ? C22 PC1 401 S 1 HETATM 18 C C23 PC1 . . . LB 51 212.547 124.402 205.376 1 81.19 ? C23 PC1 401 S 1 HETATM 19 C C24 PC1 . . . LB 51 212.24 125.789 204.804 1 81.19 ? C24 PC1 401 S 1 HETATM 20 C C25 PC1 . . . LB 51 212.316 125.823 203.272 1 81.19 ? C25 PC1 401 S 1 HETATM 21 C C26 PC1 . . . LB 51 213.462 124.973 202.712 1 81.19 ? C26 PC1 401 S 1 HETATM 22 C C27 PC1 . . . LB 51 214.7 125.829 202.451 1 81.19 ? C27 PC1 401 S 1 HETATM 23 C C28 PC1 . . . LB 51 215.743 125.63 203.553 1 81.19 ? C28 PC1 401 S 1 HETATM 24 C C29 PC1 . . . LB 51 216.096 124.153 203.712 1 81.19 ? C29 PC1 401 S 1 HETATM 25 C C2A PC1 . . . LB 51 216.616 123.91 205.125 1 81.19 ? C2A PC1 401 S 1 HETATM 26 C C2B PC1 . . . LB 51 217.982 124.568 205.286 1 81.19 ? C2B PC1 401 S 1 HETATM 27 C C3 PC1 . . . LB 51 208.834 120.166 205.579 1 81.19 ? C3 PC1 401 S 1 HETATM 28 O O31 PC1 . . . LB 51 207.468 120.132 205.276 1 81.19 ? O31 PC1 401 S 1 HETATM 29 C C31 PC1 . . . LB 51 206.911 118.852 205.331 1 81.19 ? C31 PC1 401 S 1 HETATM 30 O O32 PC1 . . . LB 51 206.567 118.412 206.374 1 81.19 ? O32 PC1 401 S 1 HETATM 31 C C32 PC1 . . . LB 51 206.74 118.033 204.051 1 81.19 ? C32 PC1 401 S 1 HETATM 32 C C33 PC1 . . . LB 51 207.799 116.932 203.977 1 81.19 ? C33 PC1 401 S 1 HETATM 33 C C34 PC1 . . . LB 51 208.844 117.317 202.93 1 81.19 ? C34 PC1 401 S 1 HETATM 34 C C35 PC1 . . . LB 51 208.604 116.529 201.638 1 81.19 ? C35 PC1 401 S 1 HETATM 35 C C36 PC1 . . . LB 51 209.354 117.141 200.449 1 81.19 ? C36 PC1 401 S 1 HETATM 36 C C37 PC1 . . . LB 51 210.836 117.357 200.767 1 81.19 ? C37 PC1 401 S 1 HETATM 37 C C38 PC1 . . . LB 51 211.475 118.093 199.594 1 81.19 ? C38 PC1 401 S 1 HETATM 38 C C39 PC1 . . . LB 51 212.812 118.72 199.988 1 81.19 ? C39 PC1 401 S 1 HETATM 39 C C3A PC1 . . . LB 51 213.141 119.834 198.993 1 81.19 ? C3A PC1 401 S 1 HETATM 40 C C3B PC1 . . . LB 51 214.648 120.075 198.915 1 81.19 ? C3B PC1 401 S 1 HETATM 41 C C3C PC1 . . . LB 51 215.037 121.229 199.839 1 81.19 ? C3C PC1 401 S 1 HETATM 42 C C3D PC1 . . . LB 51 216.528 121.533 199.71 1 81.19 ? C3D PC1 401 S 1 HETATM 43 C C3E PC1 . . . LB 51 217.342 120.267 199.968 1 81.19 ? C3E PC1 401 S 1 HETATM 44 C C3F PC1 . . . LB 51 218.831 120.595 199.981 1 81.19 ? C3F PC1 401 S 1 HETATM 45 C C3G PC1 . . . LB 51 219.513 119.73 201.036 1 81.19 ? C3G PC1 401 S 1 HETATM 46 C C3H PC1 . . . LB 51 219.96 120.61 202.2 1 81.19 ? C3H PC1 401 S 1 HETATM 47 C C3I PC1 . . . LB 51 219.47 120.017 203.52 1 81.19 ? C3I PC1 401 S 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 68 _model_server_stats.query_time_ms 254 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 47 #