data_7DGZ # _model_server_result.job_id 9qhBk3VOwt7mJ6j-hGsuUA _model_server_result.datetime_utc '2025-03-06 02:41:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7dgz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"WA","auth_seq_id":501}' # _entry.id 7DGZ # _exptl.entry_id 7DGZ _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 456.344 _entity.id 47 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7DGZ _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7DGZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 45-meric _pdbx_struct_assembly.oligomeric_count 45 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 47 _struct_asym.id WA _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 O SG CYS 32 H CYS 33 1_555 O SG CYS 65 H CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf2 O SG CYS 42 H CYS 43 1_555 O SG CYS 55 H CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 W SG CYS 45 Q CYS 46 1_555 W SG CYS 55 Q CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf4 W SG CYS 87 Q CYS 88 1_555 W SG CYS 99 Q CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 Z SG CYS 17 T CYS 18 1_555 Z SG CYS 74 T CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf6 Z SG CYS 94 T CYS 95 1_555 Z SG CYS 114 T CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf7 JA SG CYS 58 d CYS 59 1_555 JA SG CYS 89 d CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf8 QA SG CYS 113 g CYS 113 1_555 QA SG CYS 125 g CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? metalc ? metalc1 P NE2 HIS 68 I HIS 96 1_555 GB ZN ZN . I ZN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? metalc ? metalc2 P SG CYS 87 I CYS 115 1_555 GB ZN ZN . I ZN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.508 ? # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 474 n n N1 C10 FMN doub 475 n n C2 O2 FMN doub 476 n n C2 N3 FMN sing 477 n n N3 C4 FMN sing 478 n n N3 HN3 FMN sing 479 n n C4 O4 FMN doub 480 n n C4 C4A FMN sing 481 n n C4A N5 FMN doub 482 n n C4A C10 FMN sing 483 n n N5 C5A FMN sing 484 n n C5A C6 FMN doub 485 n y C5A C9A FMN sing 486 n y C6 C7 FMN sing 487 n y C6 H6 FMN sing 488 n n C7 C7M FMN sing 489 n n C7 C8 FMN doub 490 n y C7M HM71 FMN sing 491 n n C7M HM72 FMN sing 492 n n C7M HM73 FMN sing 493 n n C8 C8M FMN sing 494 n n C8 C9 FMN sing 495 n y C8M HM81 FMN sing 496 n n C8M HM82 FMN sing 497 n n C8M HM83 FMN sing 498 n n C9 C9A FMN doub 499 n y C9 H9 FMN sing 500 n n C9A N10 FMN sing 501 n n N10 C10 FMN sing 502 n n N10 C1' FMN sing 503 n n C1' C2' FMN sing 504 n n C1' "H1'1" FMN sing 505 n n C1' "H1'2" FMN sing 506 n n C2' O2' FMN sing 507 n n C2' C3' FMN sing 508 n n C2' H2' FMN sing 509 n n O2' HO2' FMN sing 510 n n C3' O3' FMN sing 511 n n C3' C4' FMN sing 512 n n C3' H3' FMN sing 513 n n O3' HO3' FMN sing 514 n n C4' O4' FMN sing 515 n n C4' C5' FMN sing 516 n n C4' H4' FMN sing 517 n n O4' HO4' FMN sing 518 n n C5' O5' FMN sing 519 n n C5' "H5'1" FMN sing 520 n n C5' "H5'2" FMN sing 521 n n O5' P FMN sing 522 n n P O1P FMN doub 523 n n P O2P FMN sing 524 n n P O3P FMN sing 525 n n O2P HOP2 FMN sing 526 n n O3P HOP3 FMN sing 527 n n # _atom_sites.entry_id 7DGZ _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code TA 45 3PE 2 1 401 401 3PE 3PE . UA 46 CDL 4 1 501 501 CDL CDL . VA 45 3PE 4 1 502 502 3PE 3PE . WA 47 FMN 8 1 501 501 FMN FMN . XA 48 SF4 8 1 502 502 SF4 SF4 . YA 49 FES 9 1 301 301 FES FES . ZA 48 SF4 A 1 801 801 SF4 SF4 . AB 48 SF4 A 1 802 802 SF4 SF4 . BB 49 FES A 1 803 803 FES FES . CB 45 3PE B 1 501 501 3PE 3PE . DB 48 SF4 D 1 301 301 SF4 SF4 . EB 48 SF4 E 1 301 301 SF4 SF4 . FB 48 SF4 E 1 302 302 SF4 SF4 . GB 50 ZN I 1 300 300 ZN ZN . HB 46 CDL J 1 101 101 CDL CDL . IB 51 PC1 L 1 200 200 PC1 PC1 . JB 51 PC1 Q 1 201 201 PC1 PC1 . KB 52 NAP R 1 601 601 NAP NAP . LB 51 PC1 S 1 401 401 PC1 PC1 . MB 45 3PE V 1 201 201 3PE 3PE . NB 51 PC1 j 1 201 201 PC1 PC1 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . WA 47 106.054 82.276 136.551 1 60.93 ? N1 FMN 501 8 1 HETATM 2 C C2 FMN . . . WA 47 105.345 82.081 135.398 1 60.93 ? C2 FMN 501 8 1 HETATM 3 O O2 FMN . . . WA 47 104.219 82.546 135.309 1 60.93 ? O2 FMN 501 8 1 HETATM 4 N N3 FMN . . . WA 47 105.898 81.371 134.363 1 60.93 ? N3 FMN 501 8 1 HETATM 5 C C4 FMN . . . WA 47 107.167 80.874 134.515 1 60.93 ? C4 FMN 501 8 1 HETATM 6 O O4 FMN . . . WA 47 107.684 80.234 133.605 1 60.93 ? O4 FMN 501 8 1 HETATM 7 C C4A FMN . . . WA 47 107.875 81.083 135.687 1 60.93 ? C4A FMN 501 8 1 HETATM 8 N N5 FMN . . . WA 47 109.136 80.558 135.774 1 60.93 ? N5 FMN 501 8 1 HETATM 9 C C5A FMN . . . WA 47 109.872 80.733 136.918 1 60.93 ? C5A FMN 501 8 1 HETATM 10 C C6 FMN . . . WA 47 111.152 80.193 136.98 1 60.93 ? C6 FMN 501 8 1 HETATM 11 C C7 FMN . . . WA 47 111.922 80.356 138.122 1 60.93 ? C7 FMN 501 8 1 HETATM 12 C C7M FMN . . . WA 47 113.299 79.76 138.171 1 60.93 ? C7M FMN 501 8 1 HETATM 13 C C8 FMN . . . WA 47 111.406 81.071 139.2 1 60.93 ? C8 FMN 501 8 1 HETATM 14 C C8M FMN . . . WA 47 112.215 81.268 140.451 1 60.93 ? C8M FMN 501 8 1 HETATM 15 C C9 FMN . . . WA 47 110.127 81.611 139.129 1 60.93 ? C9 FMN 501 8 1 HETATM 16 C C9A FMN . . . WA 47 109.344 81.45 137.986 1 60.93 ? C9A FMN 501 8 1 HETATM 17 N N10 FMN . . . WA 47 108.072 82.006 137.912 1 60.93 ? N10 FMN 501 8 1 HETATM 18 C C10 FMN . . . WA 47 107.329 81.796 136.745 1 60.93 ? C10 FMN 501 8 1 HETATM 19 C C1' FMN . . . WA 47 107.61 82.747 139.154 1 60.93 ? C1' FMN 501 8 1 HETATM 20 C C2' FMN . . . WA 47 106.943 84.11 139.066 1 60.93 ? C2' FMN 501 8 1 HETATM 21 O O2' FMN . . . WA 47 107.507 84.987 140.004 1 60.93 ? O2' FMN 501 8 1 HETATM 22 C C3' FMN . . . WA 47 105.474 83.886 139.378 1 60.93 ? C3' FMN 501 8 1 HETATM 23 O O3' FMN . . . WA 47 104.808 83.669 138.159 1 60.93 ? O3' FMN 501 8 1 HETATM 24 C C4' FMN . . . WA 47 104.822 85.052 140.078 1 60.93 ? C4' FMN 501 8 1 HETATM 25 O O4' FMN . . . WA 47 105.535 85.32 141.257 1 60.93 ? O4' FMN 501 8 1 HETATM 26 C C5' FMN . . . WA 47 103.41 84.642 140.441 1 60.93 ? C5' FMN 501 8 1 HETATM 27 O O5' FMN . . . WA 47 103.479 83.529 141.298 1 60.93 ? O5' FMN 501 8 1 HETATM 28 P P FMN . . . WA 47 102.118 82.824 141.778 1 60.93 ? P FMN 501 8 1 HETATM 29 O O1P FMN . . . WA 47 101.914 81.529 141.037 1 60.93 ? O1P FMN 501 8 1 HETATM 30 O O2P FMN . . . WA 47 102.149 82.563 143.263 1 60.93 ? O2P FMN 501 8 1 HETATM 31 O O3P FMN . . . WA 47 100.979 83.744 141.437 1 60.93 ? O3P FMN 501 8 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 73 _model_server_stats.query_time_ms 255 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 31 #