data_7DGZ
#
_model_server_result.job_id            Y469dwbRIQmUSSxViogWSQ 
_model_server_result.datetime_utc      '2025-03-06 02:44:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7dgz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"KB","auth_seq_id":601}' 
#
_entry.id    7DGZ 
#
_exptl.entry_id    7DGZ 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              743.405 
_entity.id                          52 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7DGZ 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7DGZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    45-meric 
_pdbx_struct_assembly.oligomeric_count      45 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      52 
_struct_asym.id                             KB 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 O SG CYS 32 H CYS 33 1_555 O SG CYS 65 H CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf2 O SG CYS 42 H CYS 43 1_555 O SG CYS 55 H CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf3 W SG CYS 45 Q CYS 46 1_555 W SG CYS 55 Q CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf4 W SG CYS 87 Q CYS 88 1_555 W SG CYS 99 Q CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf5 Z SG CYS 17 T CYS 18 1_555 Z SG CYS 74 T CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf6 Z SG CYS 94 T CYS 95 1_555 Z SG CYS 114 T CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
disulf ? disulf7 JA SG CYS 58 d CYS 59 1_555 JA SG CYS 89 d CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf8 QA SG CYS 113 g CYS 113 1_555 QA SG CYS 125 g CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
metalc ? metalc1 P NE2 HIS 68 I HIS 96 1_555 GB ZN ZN . I ZN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? 
metalc ? metalc2 P SG CYS 87 I CYS 115 1_555 GB ZN ZN . I ZN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.508 ? 
#
_chem_comp.formula           'C21 H28 N7 O17 P3' 
_chem_comp.formula_weight    743.405 
_chem_comp.id                NAP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAP doub 680 n n 
PA O2A NAP sing 681 n n 
PA O5B NAP sing 682 n n 
PA O3 NAP sing 683 n n 
O2A HOA2 NAP sing 684 n n 
O5B C5B NAP sing 685 n n 
C5B C4B NAP sing 686 n n 
C5B H51A NAP sing 687 n n 
C5B H52A NAP sing 688 n n 
C4B O4B NAP sing 689 n n 
C4B C3B NAP sing 690 n n 
C4B H4B NAP sing 691 n n 
O4B C1B NAP sing 692 n n 
C3B O3B NAP sing 693 n n 
C3B C2B NAP sing 694 n n 
C3B H3B NAP sing 695 n n 
O3B HO3A NAP sing 696 n n 
C2B O2B NAP sing 697 n n 
C2B C1B NAP sing 698 n n 
C2B H2B NAP sing 699 n n 
O2B P2B NAP sing 700 n n 
C1B N9A NAP sing 701 n n 
C1B H1B NAP sing 702 n n 
N9A C8A NAP sing 703 n y 
N9A C4A NAP sing 704 n y 
C8A N7A NAP doub 705 n y 
C8A H8A NAP sing 706 n n 
N7A C5A NAP sing 707 n y 
C5A C6A NAP sing 708 n y 
C5A C4A NAP doub 709 n y 
C6A N6A NAP sing 710 n n 
C6A N1A NAP doub 711 n y 
N6A H61A NAP sing 712 n n 
N6A H62A NAP sing 713 n n 
N1A C2A NAP sing 714 n y 
C2A N3A NAP doub 715 n y 
C2A H2A NAP sing 716 n n 
N3A C4A NAP sing 717 n y 
O3 PN NAP sing 718 n n 
PN O1N NAP doub 719 n n 
PN O2N NAP sing 720 n n 
PN O5D NAP sing 721 n n 
O5D C5D NAP sing 722 n n 
C5D C4D NAP sing 723 n n 
C5D H51N NAP sing 724 n n 
C5D H52N NAP sing 725 n n 
C4D O4D NAP sing 726 n n 
C4D C3D NAP sing 727 n n 
C4D H4D NAP sing 728 n n 
O4D C1D NAP sing 729 n n 
C3D O3D NAP sing 730 n n 
C3D C2D NAP sing 731 n n 
C3D H3D NAP sing 732 n n 
O3D HO3N NAP sing 733 n n 
C2D O2D NAP sing 734 n n 
C2D C1D NAP sing 735 n n 
C2D H2D NAP sing 736 n n 
O2D HO2N NAP sing 737 n n 
C1D N1N NAP sing 738 n n 
C1D H1D NAP sing 739 n n 
N1N C2N NAP sing 740 n y 
N1N C6N NAP doub 741 n y 
C2N C3N NAP doub 742 n y 
C2N H2N NAP sing 743 n n 
C3N C7N NAP sing 744 n n 
C3N C4N NAP sing 745 n y 
C7N O7N NAP doub 746 n n 
C7N N7N NAP sing 747 n n 
N7N H71N NAP sing 748 n n 
N7N H72N NAP sing 749 n n 
C4N C5N NAP doub 750 n y 
C4N H4N NAP sing 751 n n 
C5N C6N NAP sing 752 n y 
C5N H5N NAP sing 753 n n 
C6N H6N NAP sing 754 n n 
P2B O1X NAP doub 755 n n 
P2B O2X NAP sing 756 n n 
P2B O3X NAP sing 757 n n 
O2X HOP2 NAP sing 758 n n 
O3X HOP3 NAP sing 759 n n 
#
_atom_sites.entry_id                     7DGZ 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
TA 45 3PE 2 1 401 401 3PE 3PE . 
UA 46 CDL 4 1 501 501 CDL CDL . 
VA 45 3PE 4 1 502 502 3PE 3PE . 
WA 47 FMN 8 1 501 501 FMN FMN . 
XA 48 SF4 8 1 502 502 SF4 SF4 . 
YA 49 FES 9 1 301 301 FES FES . 
ZA 48 SF4 A 1 801 801 SF4 SF4 . 
AB 48 SF4 A 1 802 802 SF4 SF4 . 
BB 49 FES A 1 803 803 FES FES . 
CB 45 3PE B 1 501 501 3PE 3PE . 
DB 48 SF4 D 1 301 301 SF4 SF4 . 
EB 48 SF4 E 1 301 301 SF4 SF4 . 
FB 48 SF4 E 1 302 302 SF4 SF4 . 
GB 50 ZN I 1 300 300 ZN ZN . 
HB 46 CDL J 1 101 101 CDL CDL . 
IB 51 PC1 L 1 200 200 PC1 PC1 . 
JB 51 PC1 Q 1 201 201 PC1 PC1 . 
KB 52 NAP R 1 601 601 NAP NAP . 
LB 51 PC1 S 1 401 401 PC1 PC1 . 
MB 45 3PE V 1 201 201 3PE 3PE . 
NB 51 PC1 j 1 201 201 PC1 PC1 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAP . . . KB 52 188.331 153.65 131.735 1 62.86 ? PA NAP 601 R 1 
HETATM 2 O O1A NAP . . . KB 52 189.579 152.968 132.276 1 62.86 ? O1A NAP 601 R 1 
HETATM 3 O O2A NAP . . . KB 52 188.676 154.396 130.517 1 62.86 ? O2A NAP 601 R 1 
HETATM 4 O O5B NAP . . . KB 52 187.146 152.51 131.357 1 62.86 ? O5B NAP 601 R 1 
HETATM 5 C C5B NAP . . . KB 52 186.522 152.618 130.099 1 62.86 ? C5B NAP 601 R 1 
HETATM 6 C C4B NAP . . . KB 52 186.731 151.29 129.297 1 62.86 ? C4B NAP 601 R 1 
HETATM 7 O O4B NAP . . . KB 52 187.033 151.548 128.043 1 62.86 ? O4B NAP 601 R 1 
HETATM 8 C C3B NAP . . . KB 52 187.934 150.553 129.864 1 62.86 ? C3B NAP 601 R 1 
HETATM 9 O O3B NAP . . . KB 52 187.525 149.344 130.339 1 62.86 ? O3B NAP 601 R 1 
HETATM 10 C C2B NAP . . . KB 52 188.893 150.373 128.651 1 62.86 ? C2B NAP 601 R 1 
HETATM 11 O O2B NAP . . . KB 52 189.672 149.084 128.753 1 62.86 ? O2B NAP 601 R 1 
HETATM 12 C C1B NAP . . . KB 52 188.098 150.41 127.634 1 62.86 ? C1B NAP 601 R 1 
HETATM 13 N N9A NAP . . . KB 52 188.811 150.765 126.435 1 62.86 ? N9A NAP 601 R 1 
HETATM 14 C C8A NAP . . . KB 52 189.871 151.541 126.24 1 62.86 ? C8A NAP 601 R 1 
HETATM 15 N N7A NAP . . . KB 52 190.148 151.534 124.925 1 62.86 ? N7A NAP 601 R 1 
HETATM 16 C C5A NAP . . . KB 52 189.271 150.767 124.332 1 62.86 ? C5A NAP 601 R 1 
HETATM 17 C C6A NAP . . . KB 52 189.087 150.409 123.024 1 62.86 ? C6A NAP 601 R 1 
HETATM 18 N N6A NAP . . . KB 52 189.808 150.766 121.827 1 62.86 ? N6A NAP 601 R 1 
HETATM 19 N N1A NAP . . . KB 52 188.099 149.596 122.676 1 62.86 ? N1A NAP 601 R 1 
HETATM 20 C C2A NAP . . . KB 52 187.257 149.109 123.616 1 62.86 ? C2A NAP 601 R 1 
HETATM 21 N N3A NAP . . . KB 52 187.438 149.464 124.915 1 62.86 ? N3A NAP 601 R 1 
HETATM 22 C C4A NAP . . . KB 52 188.433 150.289 125.266 1 62.86 ? C4A NAP 601 R 1 
HETATM 23 O O3 NAP . . . KB 52 187.753 154.704 132.864 1 62.86 ? O3 NAP 601 R 1 
HETATM 24 P PN NAP . . . KB 52 186.12 155.072 133.022 1 62.86 ? PN NAP 601 R 1 
HETATM 25 O O1N NAP . . . KB 52 185.968 156.186 134.051 1 62.86 ? O1N NAP 601 R 1 
HETATM 26 O O2N NAP . . . KB 52 185.379 153.843 133.462 1 62.86 ? O2N NAP 601 R 1 
HETATM 27 O O5D NAP . . . KB 52 185.507 155.594 131.556 1 62.86 ? O5D NAP 601 R 1 
HETATM 28 C C5D NAP . . . KB 52 184.774 156.829 131.536 1 62.86 ? C5D NAP 601 R 1 
HETATM 29 C C4D NAP . . . KB 52 184.651 157.336 130.059 1 62.86 ? C4D NAP 601 R 1 
HETATM 30 O O4D NAP . . . KB 52 184.653 158.63 130 1 62.86 ? O4D NAP 601 R 1 
HETATM 31 C C3D NAP . . . KB 52 185.925 156.938 129.282 1 62.86 ? C3D NAP 601 R 1 
HETATM 32 O O3D NAP . . . KB 52 185.707 157.081 127.983 1 62.86 ? O3D NAP 601 R 1 
HETATM 33 C C2D NAP . . . KB 52 186.929 157.985 129.795 1 62.86 ? C2D NAP 601 R 1 
HETATM 34 O O2D NAP . . . KB 52 188.081 158.144 128.824 1 62.86 ? O2D NAP 601 R 1 
HETATM 35 C C1D NAP . . . KB 52 186.219 159.082 129.941 1 62.86 ? C1D NAP 601 R 1 
HETATM 36 N N1N NAP . . . KB 52 186.464 159.786 131.164 1 62.86 ? N1N NAP 601 R 1 
HETATM 37 C C2N NAP . . . KB 52 185.437 160.493 131.678 1 62.86 ? C2N NAP 601 R 1 
HETATM 38 C C3N NAP . . . KB 52 185.607 161.185 132.846 1 62.86 ? C3N NAP 601 R 1 
HETATM 39 C C7N NAP . . . KB 52 184.399 162.013 133.444 1 62.86 ? C7N NAP 601 R 1 
HETATM 40 O O7N NAP . . . KB 52 184.548 162.675 134.398 1 62.86 ? O7N NAP 601 R 1 
HETATM 41 N N7N NAP . . . KB 52 183.101 161.95 132.785 1 62.86 ? N7N NAP 601 R 1 
HETATM 42 C C4N NAP . . . KB 52 186.799 161.171 133.483 1 62.86 ? C4N NAP 601 R 1 
HETATM 43 C C5N NAP . . . KB 52 187.829 160.471 132.972 1 62.86 ? C5N NAP 601 R 1 
HETATM 44 C C6N NAP . . . KB 52 187.658 159.771 131.794 1 62.86 ? C6N NAP 601 R 1 
HETATM 45 P P2B NAP . . . KB 52 189.152 147.68 128.104 1 62.86 ? P2B NAP 601 R 1 
HETATM 46 O O1X NAP . . . KB 52 189.995 146.548 128.66 1 62.86 ? O1X NAP 601 R 1 
HETATM 47 O O2X NAP . . . KB 52 187.693 147.445 128.459 1 62.86 ? O2X NAP 601 R 1 
HETATM 48 O O3X NAP . . . KB 52 189.329 147.694 126.633 1 62.86 ? O3X NAP 601 R 1 
#
_model_server_stats.io_time_ms              29 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    421 
_model_server_stats.query_time_ms           326 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           48 
#