data_7DH0
#
_model_server_result.job_id            f5WVT08iEeghnq_SiAzDQw 
_model_server_result.datetime_utc      '2025-03-06 02:46:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7dh0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"UA","auth_seq_id":501}' 
#
_entry.id    7DH0 
#
_exptl.entry_id    7DH0 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              1464.043 
_entity.id                          46 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            CARDIOLIPIN 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7DH0 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7DH0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    45-meric 
_pdbx_struct_assembly.oligomeric_count      45 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      46 
_struct_asym.id                             UA 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 O SG CYS 32 H CYS 33 1_555 O SG CYS 65 H CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf2 O SG CYS 42 H CYS 43 1_555 O SG CYS 55 H CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf3 W SG CYS 45 Q CYS 46 1_555 W SG CYS 55 Q CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf4 W SG CYS 87 Q CYS 88 1_555 W SG CYS 99 Q CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf5 Z SG CYS 17 T CYS 18 1_555 Z SG CYS 74 T CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf6 Z SG CYS 94 T CYS 95 1_555 Z SG CYS 114 T CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
disulf ? disulf7 JA SG CYS 58 d CYS 59 1_555 JA SG CYS 89 d CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf8 QA SG CYS 113 g CYS 113 1_555 QA SG CYS 125 g CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
covale ? covale1 I NH1 ARG 233 B ARG 266 1_555 CB O22 3PE . B 3PE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.277 ? 
metalc ? metalc1 G OG1 THR 105 9 THR 137 1_555 YA FE1 FES . 9 FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.795 ? 
metalc ? metalc2 H N CYS 55 A CYS 78 1_555 BB FE2 FES . A FES 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.76 ? 
metalc ? metalc3 L N CYS 80 E CYS 116 1_555 FB FE4 SF4 . E SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.781 ? 
metalc ? metalc4 L N CYS 119 E CYS 155 1_555 EB FE2 SF4 . E SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.759 ? 
metalc ? metalc5 P NE2 HIS 68 I HIS 96 1_555 GB ZN ZN . I ZN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? 
metalc ? metalc6 P SG CYS 87 I CYS 115 1_555 GB ZN ZN . I ZN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? 
#
_chem_comp.formula           'C81 H156 O17 P2 -2' 
_chem_comp.formula_weight    1464.043 
_chem_comp.id                CDL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              CARDIOLIPIN 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "DIPHOSPHATIDYL GLYCEROL;BIS-(1,2-DIACYL-SN-GLYCERO-3-PHOSPHO)-1',3'-SN-GLYCEROL" 
#
_atom_sites.entry_id                     7DH0 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
TA 45 3PE 2 1 401 401 3PE 3PE . 
UA 46 CDL 4 1 501 501 CDL CDL . 
VA 45 3PE 4 1 502 502 3PE 3PE . 
WA 47 FMN 8 1 501 501 FMN FMN . 
XA 48 SF4 8 1 502 502 SF4 SF4 . 
YA 49 FES 9 1 301 301 FES FES . 
ZA 48 SF4 A 1 801 801 SF4 SF4 . 
AB 48 SF4 A 1 802 802 SF4 SF4 . 
BB 49 FES A 1 803 803 FES FES . 
CB 45 3PE B 1 501 501 3PE 3PE . 
DB 48 SF4 D 1 301 301 SF4 SF4 . 
EB 48 SF4 E 1 301 301 SF4 SF4 . 
FB 48 SF4 E 1 302 302 SF4 SF4 . 
GB 50 ZN I 1 300 300 ZN ZN . 
HB 51 NAP R 1 601 601 NAP NAP . 
IB 52 PC1 S 1 401 401 PC1 PC1 . 
JB 52 PC1 j 1 201 201 PC1 PC1 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 CDL . . . UA 46 233.499 191.565 272.645 1 183.66 ? C1 CDL 501 4 1 
HETATM 2 O O1 CDL . . . UA 46 234.844 191.796 272.333 1 183.66 ? O1 CDL 501 4 1 
HETATM 3 C CA2 CDL . . . UA 46 232.779 192.909 272.748 1 183.66 ? CA2 CDL 501 4 1 
HETATM 4 O OA2 CDL . . . UA 46 232.693 193.501 271.484 1 183.66 ? OA2 CDL 501 4 1 
HETATM 5 P PA1 CDL . . . UA 46 231.536 192.932 270.462 1 183.66 ? PA1 CDL 501 4 1 
HETATM 6 O OA3 CDL . . . UA 46 230.436 192.297 271.276 1 183.66 ? OA3 CDL 501 4 1 
HETATM 7 O OA4 CDL . . . UA 46 232.143 191.906 269.536 1 183.66 ? OA4 CDL 501 4 1 
HETATM 8 O OA5 CDL . . . UA 46 230.904 194.17 269.577 1 183.66 ? OA5 CDL 501 4 1 
HETATM 9 C CA3 CDL . . . UA 46 229.864 194.91 270.145 1 183.66 ? CA3 CDL 501 4 1 
HETATM 10 C CA4 CDL . . . UA 46 228.512 194.524 269.545 1 183.66 ? CA4 CDL 501 4 1 
HETATM 11 O OA6 CDL . . . UA 46 227.797 193.769 270.474 1 183.66 ? OA6 CDL 501 4 1 
HETATM 12 C CA5 CDL . . . UA 46 226.482 194.207 270.63 1 183.66 ? CA5 CDL 501 4 1 
HETATM 13 O OA7 CDL . . . UA 46 225.723 194.112 269.731 1 183.66 ? OA7 CDL 501 4 1 
HETATM 14 C C11 CDL . . . UA 46 226.02 194.812 271.95 1 183.66 ? C11 CDL 501 4 1 
HETATM 15 C C12 CDL . . . UA 46 224.631 195.414 271.763 1 183.66 ? C12 CDL 501 4 1 
HETATM 16 C C13 CDL . . . UA 46 223.64 194.741 272.708 1 183.66 ? C13 CDL 501 4 1 
HETATM 17 C C14 CDL . . . UA 46 223.619 193.235 272.464 1 183.66 ? C14 CDL 501 4 1 
HETATM 18 C C15 CDL . . . UA 46 222.876 192.931 271.168 1 183.66 ? C15 CDL 501 4 1 
HETATM 19 C C16 CDL . . . UA 46 221.536 192.277 271.497 1 183.66 ? C16 CDL 501 4 1 
HETATM 20 C C17 CDL . . . UA 46 221.113 191.354 270.357 1 183.66 ? C17 CDL 501 4 1 
HETATM 21 C C18 CDL . . . UA 46 219.702 190.836 270.621 1 183.66 ? C18 CDL 501 4 1 
HETATM 22 C CA6 CDL . . . UA 46 228.684 193.712 268.264 1 183.66 ? CA6 CDL 501 4 1 
HETATM 23 O OA8 CDL . . . UA 46 227.907 192.55 268.352 1 183.66 ? OA8 CDL 501 4 1 
HETATM 24 C CA7 CDL . . . UA 46 227.025 192.367 267.281 1 183.66 ? CA7 CDL 501 4 1 
HETATM 25 O OA9 CDL . . . UA 46 226.257 193.22 266.992 1 183.66 ? OA9 CDL 501 4 1 
HETATM 26 C C31 CDL . . . UA 46 227.067 191.074 266.468 1 183.66 ? C31 CDL 501 4 1 
HETATM 27 C C32 CDL . . . UA 46 225.681 190.439 266.396 1 183.66 ? C32 CDL 501 4 1 
HETATM 28 C C33 CDL . . . UA 46 225.085 190.634 265 1 183.66 ? C33 CDL 501 4 1 
HETATM 29 C C34 CDL . . . UA 46 226.004 190.056 263.922 1 183.66 ? C34 CDL 501 4 1 
HETATM 30 C C35 CDL . . . UA 46 225.238 189.946 262.605 1 183.66 ? C35 CDL 501 4 1 
HETATM 31 C C36 CDL . . . UA 46 224.3 188.739 262.651 1 183.66 ? C36 CDL 501 4 1 
HETATM 32 C C37 CDL . . . UA 46 223.472 188.681 261.368 1 183.66 ? C37 CDL 501 4 1 
HETATM 33 C C38 CDL . . . UA 46 222.804 187.314 261.236 1 183.66 ? C38 CDL 501 4 1 
HETATM 34 C CB2 CDL . . . UA 46 233.404 190.832 273.984 1 183.66 ? CB2 CDL 501 4 1 
HETATM 35 O OB2 CDL . . . UA 46 233.496 191.759 275.029 1 183.66 ? OB2 CDL 501 4 1 
HETATM 36 P PB2 CDL . . . UA 46 232.446 191.66 276.297 1 183.66 ? PB2 CDL 501 4 1 
HETATM 37 O OB3 CDL . . . UA 46 232.224 193.035 276.876 1 183.66 ? OB3 CDL 501 4 1 
HETATM 38 O OB4 CDL . . . UA 46 233.028 190.759 277.357 1 183.66 ? OB4 CDL 501 4 1 
HETATM 39 O OB5 CDL . . . UA 46 231.004 191.054 275.786 1 183.66 ? OB5 CDL 501 4 1 
HETATM 40 C CB3 CDL . . . UA 46 230.093 191.923 275.183 1 183.66 ? CB3 CDL 501 4 1 
HETATM 41 C CB4 CDL . . . UA 46 228.859 192.066 276.073 1 183.66 ? CB4 CDL 501 4 1 
HETATM 42 O OB6 CDL . . . UA 46 227.75 191.324 275.61 1 183.66 ? OB6 CDL 501 4 1 
HETATM 43 C CB5 CDL . . . UA 46 227.431 191.221 274.239 1 183.66 ? CB5 CDL 501 4 1 
HETATM 44 O OB7 CDL . . . UA 46 227.337 192.169 273.53 1 183.66 ? OB7 CDL 501 4 1 
HETATM 45 C C51 CDL . . . UA 46 227.135 189.85 273.633 1 183.66 ? C51 CDL 501 4 1 
HETATM 46 C C52 CDL . . . UA 46 225.986 189.987 272.629 1 183.66 ? C52 CDL 501 4 1 
HETATM 47 C C53 CDL . . . UA 46 224.977 188.851 272.814 1 183.66 ? C53 CDL 501 4 1 
HETATM 48 C C54 CDL . . . UA 46 223.542 189.369 272.675 1 183.66 ? C54 CDL 501 4 1 
HETATM 49 C C55 CDL . . . UA 46 222.596 188.529 273.536 1 183.66 ? C55 CDL 501 4 1 
HETATM 50 C C56 CDL . . . UA 46 221.213 189.174 273.618 1 183.66 ? C56 CDL 501 4 1 
HETATM 51 C C57 CDL . . . UA 46 220.384 188.464 274.687 1 183.66 ? C57 CDL 501 4 1 
HETATM 52 C C58 CDL . . . UA 46 218.982 189.073 274.769 1 183.66 ? C58 CDL 501 4 1 
HETATM 53 C C59 CDL . . . UA 46 218.087 188.209 275.658 1 183.66 ? C59 CDL 501 4 1 
HETATM 54 C C60 CDL . . . UA 46 216.634 188.668 275.544 1 183.66 ? C60 CDL 501 4 1 
HETATM 55 C C61 CDL . . . UA 46 216.403 189.87 276.459 1 183.66 ? C61 CDL 501 4 1 
HETATM 56 C C62 CDL . . . UA 46 215.096 190.566 276.076 1 183.66 ? C62 CDL 501 4 1 
HETATM 57 C C63 CDL . . . UA 46 214.707 191.583 277.152 1 183.66 ? C63 CDL 501 4 1 
HETATM 58 C C64 CDL . . . UA 46 213.388 192.26 276.773 1 183.66 ? C64 CDL 501 4 1 
HETATM 59 C C65 CDL . . . UA 46 212.823 193.024 277.97 1 183.66 ? C65 CDL 501 4 1 
HETATM 60 C C66 CDL . . . UA 46 211.489 193.66 277.579 1 183.66 ? C66 CDL 501 4 1 
HETATM 61 C C67 CDL . . . UA 46 211.726 194.708 276.495 1 183.66 ? C67 CDL 501 4 1 
HETATM 62 C CB6 CDL . . . UA 46 228.506 193.545 276.25 1 183.66 ? CB6 CDL 501 4 1 
HETATM 63 O OB8 CDL . . . UA 46 227.397 193.643 277.093 1 183.66 ? OB8 CDL 501 4 1 
HETATM 64 C CB7 CDL . . . UA 46 226.283 194.253 276.508 1 183.66 ? CB7 CDL 501 4 1 
HETATM 65 O OB9 CDL . . . UA 46 226.199 195.433 276.476 1 183.66 ? OB9 CDL 501 4 1 
HETATM 66 C C71 CDL . . . UA 46 225.173 193.396 275.905 1 183.66 ? C71 CDL 501 4 1 
HETATM 67 C C72 CDL . . . UA 46 223.854 193.674 276.624 1 183.66 ? C72 CDL 501 4 1 
HETATM 68 C C73 CDL . . . UA 46 222.729 192.791 276.074 1 183.66 ? C73 CDL 501 4 1 
HETATM 69 C C74 CDL . . . UA 46 223.131 191.313 276.082 1 183.66 ? C74 CDL 501 4 1 
HETATM 70 C C75 CDL . . . UA 46 222.445 190.579 277.232 1 183.66 ? C75 CDL 501 4 1 
HETATM 71 C C76 CDL . . . UA 46 223.469 190.317 278.334 1 183.66 ? C76 CDL 501 4 1 
HETATM 72 C C77 CDL . . . UA 46 223.28 191.349 279.445 1 183.66 ? C77 CDL 501 4 1 
HETATM 73 C C78 CDL . . . UA 46 223.28 190.685 280.82 1 183.66 ? C78 CDL 501 4 1 
HETATM 74 C C79 CDL . . . UA 46 222.253 189.556 280.856 1 183.66 ? C79 CDL 501 4 1 
HETATM 75 C C80 CDL . . . UA 46 220.978 189.986 281.571 1 183.66 ? C80 CDL 501 4 1 
HETATM 76 C C81 CDL . . . UA 46 220.884 189.234 282.895 1 183.66 ? C81 CDL 501 4 1 
HETATM 77 C C82 CDL . . . UA 46 220.709 187.742 282.635 1 183.66 ? C82 CDL 501 4 1 
HETATM 78 C C83 CDL . . . UA 46 219.222 187.408 282.601 1 183.66 ? C83 CDL 501 4 1 
HETATM 79 C C84 CDL . . . UA 46 218.701 187.344 284.035 1 183.66 ? C84 CDL 501 4 1 
HETATM 80 C C85 CDL . . . UA 46 217.338 186.656 284.068 1 183.66 ? C85 CDL 501 4 1 
HETATM 81 C C86 CDL . . . UA 46 216.399 187.425 284.993 1 183.66 ? C86 CDL 501 4 1 
HETATM 82 C C87 CDL . . . UA 46 215.106 186.636 285.189 1 183.66 ? C87 CDL 501 4 1 
#
_model_server_stats.io_time_ms              32 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    99 
_model_server_stats.query_time_ms           317 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           82 
#