data_7DH0 # _model_server_result.job_id ubNWLRDoMfZjX3eSCXMFXg _model_server_result.datetime_utc '2025-03-06 02:50:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7dh0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"WA","auth_seq_id":501}' # _entry.id 7DH0 # _exptl.entry_id 7DH0 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 456.344 _entity.id 47 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7DH0 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7DH0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 45-meric _pdbx_struct_assembly.oligomeric_count 45 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 47 _struct_asym.id WA _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 O SG CYS 32 H CYS 33 1_555 O SG CYS 65 H CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf2 O SG CYS 42 H CYS 43 1_555 O SG CYS 55 H CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 W SG CYS 45 Q CYS 46 1_555 W SG CYS 55 Q CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 W SG CYS 87 Q CYS 88 1_555 W SG CYS 99 Q CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf5 Z SG CYS 17 T CYS 18 1_555 Z SG CYS 74 T CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf6 Z SG CYS 94 T CYS 95 1_555 Z SG CYS 114 T CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf7 JA SG CYS 58 d CYS 59 1_555 JA SG CYS 89 d CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf8 QA SG CYS 113 g CYS 113 1_555 QA SG CYS 125 g CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? covale ? covale1 I NH1 ARG 233 B ARG 266 1_555 CB O22 3PE . B 3PE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.277 ? metalc ? metalc1 G OG1 THR 105 9 THR 137 1_555 YA FE1 FES . 9 FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.795 ? metalc ? metalc2 H N CYS 55 A CYS 78 1_555 BB FE2 FES . A FES 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.76 ? metalc ? metalc3 L N CYS 80 E CYS 116 1_555 FB FE4 SF4 . E SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.781 ? metalc ? metalc4 L N CYS 119 E CYS 155 1_555 EB FE2 SF4 . E SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.759 ? metalc ? metalc5 P NE2 HIS 68 I HIS 96 1_555 GB ZN ZN . I ZN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? metalc ? metalc6 P SG CYS 87 I CYS 115 1_555 GB ZN ZN . I ZN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # _atom_sites.entry_id 7DH0 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code TA 45 3PE 2 1 401 401 3PE 3PE . UA 46 CDL 4 1 501 501 CDL CDL . VA 45 3PE 4 1 502 502 3PE 3PE . WA 47 FMN 8 1 501 501 FMN FMN . XA 48 SF4 8 1 502 502 SF4 SF4 . YA 49 FES 9 1 301 301 FES FES . ZA 48 SF4 A 1 801 801 SF4 SF4 . AB 48 SF4 A 1 802 802 SF4 SF4 . BB 49 FES A 1 803 803 FES FES . CB 45 3PE B 1 501 501 3PE 3PE . DB 48 SF4 D 1 301 301 SF4 SF4 . EB 48 SF4 E 1 301 301 SF4 SF4 . FB 48 SF4 E 1 302 302 SF4 SF4 . GB 50 ZN I 1 300 300 ZN ZN . HB 51 NAP R 1 601 601 NAP NAP . IB 52 PC1 S 1 401 401 PC1 PC1 . JB 52 PC1 j 1 201 201 PC1 PC1 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . WA 47 110.624 76.501 134.836 1 124.22 ? N1 FMN 501 8 1 HETATM 2 C C2 FMN . . . WA 47 109.972 76.375 133.64 1 124.22 ? C2 FMN 501 8 1 HETATM 3 O O2 FMN . . . WA 47 108.781 76.655 133.574 1 124.22 ? O2 FMN 501 8 1 HETATM 4 N N3 FMN . . . WA 47 110.647 75.932 132.529 1 124.22 ? N3 FMN 501 8 1 HETATM 5 C C4 FMN . . . WA 47 111.979 75.622 132.639 1 124.22 ? C4 FMN 501 8 1 HETATM 6 O O4 FMN . . . WA 47 112.617 75.227 131.674 1 124.22 ? O4 FMN 501 8 1 HETATM 7 C C4A FMN . . . WA 47 112.631 75.755 133.844 1 124.22 ? C4A FMN 501 8 1 HETATM 8 N N5 FMN . . . WA 47 113.959 75.437 133.889 1 124.22 ? N5 FMN 501 8 1 HETATM 9 C C5A FMN . . . WA 47 114.64 75.557 135.071 1 124.22 ? C5A FMN 501 8 1 HETATM 10 C C6 FMN . . . WA 47 115.988 75.233 135.101 1 124.22 ? C6 FMN 501 8 1 HETATM 11 C C7 FMN . . . WA 47 116.701 75.345 136.284 1 124.22 ? C7 FMN 501 8 1 HETATM 12 C C7M FMN . . . WA 47 118.157 74.983 136.296 1 124.22 ? C7M FMN 501 8 1 HETATM 13 C C8 FMN . . . WA 47 116.055 75.79 137.435 1 124.22 ? C8 FMN 501 8 1 HETATM 14 C C8M FMN . . . WA 47 116.804 75.919 138.729 1 124.22 ? C8M FMN 501 8 1 HETATM 15 C C9 FMN . . . WA 47 114.703 76.118 137.396 1 124.22 ? C9 FMN 501 8 1 HETATM 16 C C9A FMN . . . WA 47 113.984 76.003 136.211 1 124.22 ? C9A FMN 501 8 1 HETATM 17 N N10 FMN . . . WA 47 112.642 76.342 136.164 1 124.22 ? N10 FMN 501 8 1 HETATM 18 C C10 FMN . . . WA 47 111.959 76.204 134.965 1 124.22 ? C10 FMN 501 8 1 HETATM 19 C C1' FMN . . . WA 47 111.977 76.797 137.439 1 124.22 ? C1' FMN 501 8 1 HETATM 20 C C2' FMN . . . WA 47 111.506 78.243 137.508 1 124.22 ? C2' FMN 501 8 1 HETATM 21 O O2' FMN . . . WA 47 112.04 78.861 138.653 1 124.22 ? O2' FMN 501 8 1 HETATM 22 C C3' FMN . . . WA 47 109.989 78.201 137.602 1 124.22 ? C3' FMN 501 8 1 HETATM 23 O O3' FMN . . . WA 47 109.462 78.062 136.301 1 124.22 ? O3' FMN 501 8 1 HETATM 24 C C4' FMN . . . WA 47 109.368 79.42 138.253 1 124.22 ? C4' FMN 501 8 1 HETATM 25 O O4' FMN . . . WA 47 110.002 79.665 139.486 1 124.22 ? O4' FMN 501 8 1 HETATM 26 C C5' FMN . . . WA 47 107.895 79.109 138.468 1 124.22 ? C5' FMN 501 8 1 HETATM 27 O O5' FMN . . . WA 47 107.786 78.021 139.358 1 124.22 ? O5' FMN 501 8 1 HETATM 28 P P FMN . . . WA 47 106.731 76.833 139.101 1 124.22 ? P FMN 501 8 1 HETATM 29 O O1P FMN . . . WA 47 107.455 75.713 138.397 1 124.22 ? O1P FMN 501 8 1 HETATM 30 O O2P FMN . . . WA 47 106.179 76.339 140.414 1 124.22 ? O2P FMN 501 8 1 HETATM 31 O O3P FMN . . . WA 47 105.602 77.322 138.23 1 124.22 ? O3P FMN 501 8 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 79 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #