data_7DH0
#
_model_server_result.job_id            Lht88QLD2Z79uQabN2vbJw 
_model_server_result.datetime_utc      '2025-03-06 02:41:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7dh0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"VA","auth_seq_id":502}' 
#
_entry.id    7DH0 
#
_exptl.entry_id    7DH0 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              748.065 
_entity.id                          45 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-Distearoyl-sn-glycerophosphoethanolamine 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7DH0 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7DH0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    45-meric 
_pdbx_struct_assembly.oligomeric_count      45 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 45 TA N N 
? 45 VA N N 
? 45 CB N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 O SG CYS 32 H CYS 33 1_555 O SG CYS 65 H CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf2 O SG CYS 42 H CYS 43 1_555 O SG CYS 55 H CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf3 W SG CYS 45 Q CYS 46 1_555 W SG CYS 55 Q CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf4 W SG CYS 87 Q CYS 88 1_555 W SG CYS 99 Q CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf5 Z SG CYS 17 T CYS 18 1_555 Z SG CYS 74 T CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf6 Z SG CYS 94 T CYS 95 1_555 Z SG CYS 114 T CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
disulf ? disulf7 JA SG CYS 58 d CYS 59 1_555 JA SG CYS 89 d CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf8 QA SG CYS 113 g CYS 113 1_555 QA SG CYS 125 g CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
covale ? covale1 I NH1 ARG 233 B ARG 266 1_555 CB O22 3PE . B 3PE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.277 ? 
metalc ? metalc1 G OG1 THR 105 9 THR 137 1_555 YA FE1 FES . 9 FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.795 ? 
metalc ? metalc2 H N CYS 55 A CYS 78 1_555 BB FE2 FES . A FES 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.76 ? 
metalc ? metalc3 L N CYS 80 E CYS 116 1_555 FB FE4 SF4 . E SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.781 ? 
metalc ? metalc4 L N CYS 119 E CYS 155 1_555 EB FE2 SF4 . E SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.759 ? 
metalc ? metalc5 P NE2 HIS 68 I HIS 96 1_555 GB ZN ZN . I ZN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? 
metalc ? metalc6 P SG CYS 87 I CYS 115 1_555 GB ZN ZN . I ZN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? 
#
_chem_comp.formula           'C41 H82 N O8 P' 
_chem_comp.formula_weight    748.065 
_chem_comp.id                3PE 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-Distearoyl-sn-glycerophosphoethanolamine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     3-SN-PHOSPHATIDYLETHANOLAMINE;1,2-DIACYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE 
#
_atom_sites.entry_id                     7DH0 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
TA 45 3PE 2 1 401 401 3PE 3PE . 
UA 46 CDL 4 1 501 501 CDL CDL . 
VA 45 3PE 4 1 502 502 3PE 3PE . 
WA 47 FMN 8 1 501 501 FMN FMN . 
XA 48 SF4 8 1 502 502 SF4 SF4 . 
YA 49 FES 9 1 301 301 FES FES . 
ZA 48 SF4 A 1 801 801 SF4 SF4 . 
AB 48 SF4 A 1 802 802 SF4 SF4 . 
BB 49 FES A 1 803 803 FES FES . 
CB 45 3PE B 1 501 501 3PE 3PE . 
DB 48 SF4 D 1 301 301 SF4 SF4 . 
EB 48 SF4 E 1 301 301 SF4 SF4 . 
FB 48 SF4 E 1 302 302 SF4 SF4 . 
GB 50 ZN I 1 300 300 ZN ZN . 
HB 51 NAP R 1 601 601 NAP NAP . 
IB 52 PC1 S 1 401 401 PC1 PC1 . 
JB 52 PC1 j 1 201 201 PC1 PC1 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P 3PE . . . VA 45 244.243 183.712 217.225 1 125.89 ? P 3PE 502 4 1 
HETATM 2 N N 3PE . . . VA 45 245.804 180.751 217.756 1 125.89 ? N 3PE 502 4 1 
HETATM 3 O O11 3PE . . . VA 45 242.843 182.893 217.467 1 125.89 ? O11 3PE 502 4 1 
HETATM 4 O O12 3PE . . . VA 45 245.06 183.025 216.163 1 125.89 ? O12 3PE 502 4 1 
HETATM 5 O O13 3PE . . . VA 45 245.094 183.746 218.626 1 125.89 ? O13 3PE 502 4 1 
HETATM 6 O O14 3PE . . . VA 45 243.932 185.113 216.78 1 125.89 ? O14 3PE 502 4 1 
HETATM 7 C C11 3PE . . . VA 45 246.235 182.947 218.686 1 125.89 ? C11 3PE 502 4 1 
HETATM 8 C C12 3PE . . . VA 45 245.831 181.508 218.991 1 125.89 ? C12 3PE 502 4 1 
HETATM 9 C C1 3PE . . . VA 45 242.381 182.773 218.778 1 125.89 ? C1 3PE 502 4 1 
HETATM 10 C C2 3PE . . . VA 45 241.83 184.115 219.26 1 125.89 ? C2 3PE 502 4 1 
HETATM 11 C C3 3PE . . . VA 45 240.694 184.558 218.337 1 125.89 ? C3 3PE 502 4 1 
HETATM 12 O O31 3PE . . . VA 45 240.031 183.456 217.796 1 125.89 ? O31 3PE 502 4 1 
HETATM 13 O O32 3PE . . . VA 45 239.812 183.493 215.571 1 125.89 ? O32 3PE 502 4 1 
HETATM 14 C C31 3PE . . . VA 45 239.352 183.776 216.621 1 125.89 ? C31 3PE 502 4 1 
HETATM 15 C C32 3PE . . . VA 45 238.015 184.505 216.702 1 125.89 ? C32 3PE 502 4 1 
HETATM 16 C C33 3PE . . . VA 45 237.315 184.472 215.348 1 125.89 ? C33 3PE 502 4 1 
HETATM 17 C C34 3PE . . . VA 45 236.123 185.425 215.392 1 125.89 ? C34 3PE 502 4 1 
HETATM 18 C C35 3PE . . . VA 45 235.085 184.914 216.387 1 125.89 ? C35 3PE 502 4 1 
HETATM 19 C C36 3PE . . . VA 45 233.865 185.827 216.345 1 125.89 ? C36 3PE 502 4 1 
HETATM 20 C C37 3PE . . . VA 45 232.599 184.974 216.275 1 125.89 ? C37 3PE 502 4 1 
HETATM 21 C C38 3PE . . . VA 45 231.431 185.821 215.774 1 125.89 ? C38 3PE 502 4 1 
HETATM 22 O O21 3PE . . . VA 45 241.471 184.082 220.628 1 125.89 ? O21 3PE 502 4 1 
HETATM 23 O O22 3PE . . . VA 45 240.221 182.268 221.116 1 125.89 ? O22 3PE 502 4 1 
HETATM 24 C C21 3PE . . . VA 45 240.294 183.449 221.07 1 125.89 ? C21 3PE 502 4 1 
HETATM 25 C C22 3PE . . . VA 45 239.104 184.275 221.567 1 125.89 ? C22 3PE 502 4 1 
HETATM 26 C C23 3PE . . . VA 45 237.966 183.352 221.997 1 125.89 ? C23 3PE 502 4 1 
HETATM 27 C C24 3PE . . . VA 45 236.702 184.184 222.187 1 125.89 ? C24 3PE 502 4 1 
HETATM 28 C C25 3PE . . . VA 45 236.141 184.539 220.817 1 125.89 ? C25 3PE 502 4 1 
HETATM 29 C C26 3PE . . . VA 45 235.1 183.495 220.432 1 125.89 ? C26 3PE 502 4 1 
HETATM 30 C C27 3PE . . . VA 45 233.727 183.936 220.925 1 125.89 ? C27 3PE 502 4 1 
HETATM 31 C C28 3PE . . . VA 45 233.35 185.257 220.265 1 125.89 ? C28 3PE 502 4 1 
HETATM 32 C C29 3PE . . . VA 45 231.86 185.252 219.936 1 125.89 ? C29 3PE 502 4 1 
HETATM 33 C C2A 3PE . . . VA 45 231.062 185.697 221.157 1 125.89 ? C2A 3PE 502 4 1 
HETATM 34 C C2B 3PE . . . VA 45 230.199 186.9 220.779 1 125.89 ? C2B 3PE 502 4 1 
HETATM 35 C C2C 3PE . . . VA 45 228.844 186.793 221.476 1 125.89 ? C2C 3PE 502 4 1 
HETATM 36 C C2D 3PE . . . VA 45 228.096 185.563 220.963 1 125.89 ? C2D 3PE 502 4 1 
HETATM 37 C C2E 3PE . . . VA 45 227.443 185.879 219.618 1 125.89 ? C2E 3PE 502 4 1 
HETATM 38 C C2F 3PE . . . VA 45 226.771 184.623 219.065 1 125.89 ? C2F 3PE 502 4 1 
HETATM 39 C C2G 3PE . . . VA 45 225.613 184.211 219.973 1 125.89 ? C2G 3PE 502 4 1 
HETATM 40 C C2H 3PE . . . VA 45 224.372 185.038 219.644 1 125.89 ? C2H 3PE 502 4 1 
HETATM 41 C C2I 3PE . . . VA 45 223.747 184.53 218.347 1 125.89 ? C2I 3PE 502 4 1 
#
_model_server_stats.io_time_ms              36 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    87 
_model_server_stats.query_time_ms           303 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           41 
#