data_7DH0 # _model_server_result.job_id ps8SmppHwBWExzoUyFltEw _model_server_result.datetime_utc '2025-03-06 02:42:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7dh0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"HB","auth_seq_id":601}' # _entry.id 7DH0 # _exptl.entry_id 7DH0 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 743.405 _entity.id 51 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7DH0 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7DH0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 45-meric _pdbx_struct_assembly.oligomeric_count 45 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 51 _struct_asym.id HB _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 O SG CYS 32 H CYS 33 1_555 O SG CYS 65 H CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf2 O SG CYS 42 H CYS 43 1_555 O SG CYS 55 H CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 W SG CYS 45 Q CYS 46 1_555 W SG CYS 55 Q CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 W SG CYS 87 Q CYS 88 1_555 W SG CYS 99 Q CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf5 Z SG CYS 17 T CYS 18 1_555 Z SG CYS 74 T CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf6 Z SG CYS 94 T CYS 95 1_555 Z SG CYS 114 T CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf7 JA SG CYS 58 d CYS 59 1_555 JA SG CYS 89 d CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf8 QA SG CYS 113 g CYS 113 1_555 QA SG CYS 125 g CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? covale ? covale1 I NH1 ARG 233 B ARG 266 1_555 CB O22 3PE . B 3PE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.277 ? metalc ? metalc1 G OG1 THR 105 9 THR 137 1_555 YA FE1 FES . 9 FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.795 ? metalc ? metalc2 H N CYS 55 A CYS 78 1_555 BB FE2 FES . A FES 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.76 ? metalc ? metalc3 L N CYS 80 E CYS 116 1_555 FB FE4 SF4 . E SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.781 ? metalc ? metalc4 L N CYS 119 E CYS 155 1_555 EB FE2 SF4 . E SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.759 ? metalc ? metalc5 P NE2 HIS 68 I HIS 96 1_555 GB ZN ZN . I ZN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? metalc ? metalc6 P SG CYS 87 I CYS 115 1_555 GB ZN ZN . I ZN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # _atom_sites.entry_id 7DH0 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code TA 45 3PE 2 1 401 401 3PE 3PE . UA 46 CDL 4 1 501 501 CDL CDL . VA 45 3PE 4 1 502 502 3PE 3PE . WA 47 FMN 8 1 501 501 FMN FMN . XA 48 SF4 8 1 502 502 SF4 SF4 . YA 49 FES 9 1 301 301 FES FES . ZA 48 SF4 A 1 801 801 SF4 SF4 . AB 48 SF4 A 1 802 802 SF4 SF4 . BB 49 FES A 1 803 803 FES FES . CB 45 3PE B 1 501 501 3PE 3PE . DB 48 SF4 D 1 301 301 SF4 SF4 . EB 48 SF4 E 1 301 301 SF4 SF4 . FB 48 SF4 E 1 302 302 SF4 SF4 . GB 50 ZN I 1 300 300 ZN ZN . HB 51 NAP R 1 601 601 NAP NAP . IB 52 PC1 S 1 401 401 PC1 PC1 . JB 52 PC1 j 1 201 201 PC1 PC1 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . HB 51 191.805 149.651 132.77 1 116.11 ? PA NAP 601 R 1 HETATM 2 O O1A NAP . . . HB 51 192.686 148.558 133.358 1 116.11 ? O1A NAP 601 R 1 HETATM 3 O O2A NAP . . . HB 51 192.572 150.36 131.728 1 116.11 ? O2A NAP 601 R 1 HETATM 4 O O5B NAP . . . HB 51 190.401 148.956 132.121 1 116.11 ? O5B NAP 601 R 1 HETATM 5 C C5B NAP . . . HB 51 190.092 149.136 130.756 1 116.11 ? C5B NAP 601 R 1 HETATM 6 C C4B NAP . . . HB 51 190.304 147.792 129.968 1 116.11 ? C4B NAP 601 R 1 HETATM 7 O O4B NAP . . . HB 51 190.785 147.996 128.759 1 116.11 ? O4B NAP 601 R 1 HETATM 8 C C3B NAP . . . HB 51 191.357 146.951 130.678 1 116.11 ? C3B NAP 601 R 1 HETATM 9 O O3B NAP . . . HB 51 190.8 145.774 131.071 1 116.11 ? O3B NAP 601 R 1 HETATM 10 C C2B NAP . . . HB 51 192.457 146.692 129.615 1 116.11 ? C2B NAP 601 R 1 HETATM 11 O O2B NAP . . . HB 51 193.109 145.357 129.884 1 116.11 ? O2B NAP 601 R 1 HETATM 12 C C1B NAP . . . HB 51 191.8 146.766 128.504 1 116.11 ? C1B NAP 601 R 1 HETATM 13 N N9A NAP . . . HB 51 192.686 147.076 127.417 1 116.11 ? N9A NAP 601 R 1 HETATM 14 C C8A NAP . . . HB 51 193.715 147.908 127.33 1 116.11 ? C8A NAP 601 R 1 HETATM 15 N N7A NAP . . . HB 51 194.21 147.824 126.081 1 116.11 ? N7A NAP 601 R 1 HETATM 16 C C5A NAP . . . HB 51 193.491 146.955 125.422 1 116.11 ? C5A NAP 601 R 1 HETATM 17 C C6A NAP . . . HB 51 193.55 146.49 124.136 1 116.11 ? C6A NAP 601 R 1 HETATM 18 N N6A NAP . . . HB 51 194.44 146.797 123.04 1 116.11 ? N6A NAP 601 R 1 HETATM 19 N N1A NAP . . . HB 51 192.68 145.59 123.711 1 116.11 ? N1A NAP 601 R 1 HETATM 20 C C2A NAP . . . HB 51 191.722 145.121 124.546 1 116.11 ? C2A NAP 601 R 1 HETATM 21 N N3A NAP . . . HB 51 191.666 145.575 125.824 1 116.11 ? N3A NAP 601 R 1 HETATM 22 C C4A NAP . . . HB 51 192.539 146.492 126.249 1 116.11 ? C4A NAP 601 R 1 HETATM 23 O O3 NAP . . . HB 51 191.367 150.712 133.959 1 116.11 ? O3 NAP 601 R 1 HETATM 24 P PN NAP . . . HB 51 189.818 151.371 134.022 1 116.11 ? PN NAP 601 R 1 HETATM 25 O O1N NAP . . . HB 51 189.791 152.493 135.054 1 116.11 ? O1N NAP 601 R 1 HETATM 26 O O2N NAP . . . HB 51 188.846 150.293 134.409 1 116.11 ? O2N NAP 601 R 1 HETATM 27 O O5D NAP . . . HB 51 189.422 151.965 132.501 1 116.11 ? O5D NAP 601 R 1 HETATM 28 C C5D NAP . . . HB 51 188.593 153.134 132.385 1 116.11 ? C5D NAP 601 R 1 HETATM 29 C C4D NAP . . . HB 51 188.457 153.574 130.881 1 116.11 ? C4D NAP 601 R 1 HETATM 30 O O4D NAP . . . HB 51 188.417 154.867 130.776 1 116.11 ? O4D NAP 601 R 1 HETATM 31 C C3D NAP . . . HB 51 189.729 153.213 130.086 1 116.11 ? C3D NAP 601 R 1 HETATM 32 O O3D NAP . . . HB 51 189.486 153.333 128.788 1 116.11 ? O3D NAP 601 R 1 HETATM 33 C C2D NAP . . . HB 51 190.707 154.306 130.528 1 116.11 ? C2D NAP 601 R 1 HETATM 34 O O2D NAP . . . HB 51 191.77 154.515 129.479 1 116.11 ? O2D NAP 601 R 1 HETATM 35 C C1D NAP . . . HB 51 189.963 155.374 130.671 1 116.11 ? C1D NAP 601 R 1 HETATM 36 N N1N NAP . . . HB 51 190.257 156.105 131.869 1 116.11 ? N1N NAP 601 R 1 HETATM 37 C C2N NAP . . . HB 51 189.229 156.688 132.527 1 116.11 ? C2N NAP 601 R 1 HETATM 38 C C3N NAP . . . HB 51 189.474 157.393 133.677 1 116.11 ? C3N NAP 601 R 1 HETATM 39 C C7N NAP . . . HB 51 188.285 158.083 134.46 1 116.11 ? C7N NAP 601 R 1 HETATM 40 O O7N NAP . . . HB 51 188.536 158.818 135.338 1 116.11 ? O7N NAP 601 R 1 HETATM 41 N N7N NAP . . . HB 51 186.897 157.817 134.081 1 116.11 ? N7N NAP 601 R 1 HETATM 42 C C4N NAP . . . HB 51 190.735 157.516 134.152 1 116.11 ? C4N NAP 601 R 1 HETATM 43 C C5N NAP . . . HB 51 191.764 156.94 133.501 1 116.11 ? C5N NAP 601 R 1 HETATM 44 C C6N NAP . . . HB 51 191.518 156.231 132.344 1 116.11 ? C6N NAP 601 R 1 HETATM 45 P P2B NAP . . . HB 51 192.735 143.968 129.104 1 116.11 ? P2B NAP 601 R 1 HETATM 46 O O1X NAP . . . HB 51 193.321 142.81 129.893 1 116.11 ? O1X NAP 601 R 1 HETATM 47 O O2X NAP . . . HB 51 191.232 143.775 128.988 1 116.11 ? O2X NAP 601 R 1 HETATM 48 O O3X NAP . . . HB 51 193.366 143.961 127.76 1 116.11 ? O3X NAP 601 R 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 68 _model_server_stats.query_time_ms 252 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 48 #