data_7DH3 # _model_server_result.job_id EsJ9YGWDtrPv09wZWVGpsQ _model_server_result.datetime_utc '2024-10-13 16:25:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7dh3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 7DH3 # _exptl.entry_id 7DH3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 354.466 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2,7-dimethoxy-9-piperidin-4-ylsulfanyl-acridine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7DH3 _cell.length_a 64.56 _cell.length_b 128.83 _cell.length_c 132.45 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7DH3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C THR 169 A THR 381 1_555 A N PTR 170 A PTR 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C PTR 170 A PTR 382 1_555 A N ILE 171 A ILE 383 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 A C SER 245 A SER 457 1_555 A N SEP 246 A SEP 458 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale4 A C SEP 246 A SEP 458 1_555 A N LYS 247 A LYS 459 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? # _chem_comp.formula 'C20 H22 N2 O2 S' _chem_comp.formula_weight 354.466 _chem_comp.id H7C _chem_comp.mon_nstd_flag . _chem_comp.name 2,7-dimethoxy-9-piperidin-4-ylsulfanyl-acridine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O17 C20 H7C sing 129 n n O17 C09 H7C sing 130 n n C08 C09 H7C sing 131 n y C08 C07 H7C doub 132 n y C09 C10 H7C doub 133 n y C07 C05 H7C sing 134 n y C22 N23 H7C sing 135 n n C22 C21 H7C sing 136 n n N23 C24 H7C sing 137 n n C10 C06 H7C sing 138 n y C05 C06 H7C doub 139 n y C05 N04 H7C sing 140 n y C24 C25 H7C sing 141 n n C06 C01 H7C sing 142 n y N04 C03 H7C doub 143 n y C25 C16 H7C sing 144 n n C21 C16 H7C sing 145 n n C01 C02 H7C doub 146 n y C01 S15 H7C sing 147 n n C16 S15 H7C sing 148 n n C03 C02 H7C sing 149 n y C03 C14 H7C sing 150 n y C02 C11 H7C sing 151 n y C14 C13 H7C doub 152 n y C11 C12 H7C doub 153 n y C13 C12 H7C sing 154 n y C12 O18 H7C sing 155 n n O18 C19 H7C sing 156 n n C10 H1 H7C sing 157 n n C11 H2 H7C sing 158 n n C13 H3 H7C sing 159 n n C14 H4 H7C sing 160 n n C16 H5 H7C sing 161 n n C19 H6 H7C sing 162 n n C19 H7 H7C sing 163 n n C19 H8 H7C sing 164 n n C21 H9 H7C sing 165 n n C21 H10 H7C sing 166 n n C22 H11 H7C sing 167 n n C22 H12 H7C sing 168 n n C24 H13 H7C sing 169 n n C24 H14 H7C sing 170 n n C25 H15 H7C sing 171 n n C25 H16 H7C sing 172 n n C07 H17 H7C sing 173 n n C08 H18 H7C sing 174 n n C20 H19 H7C sing 175 n n C20 H20 H7C sing 176 n n C20 H21 H7C sing 177 n n N23 H22 H7C sing 178 n n # _atom_sites.entry_id 7DH3 _atom_sites.fract_transf_matrix[1][1] 0.015489 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007762 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00755 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 H7C A 1 601 2 H7C L01 . C 3 HOH A 1 701 51 HOH HOH . C 3 HOH A 2 702 5 HOH HOH . C 3 HOH A 3 703 62 HOH HOH . C 3 HOH A 4 704 39 HOH HOH . C 3 HOH A 5 705 29 HOH HOH . C 3 HOH A 6 706 41 HOH HOH . C 3 HOH A 7 707 35 HOH HOH . C 3 HOH A 8 708 8 HOH HOH . C 3 HOH A 9 709 33 HOH HOH . C 3 HOH A 10 710 6 HOH HOH . C 3 HOH A 11 711 12 HOH HOH . C 3 HOH A 12 712 13 HOH HOH . C 3 HOH A 13 713 3 HOH HOH . C 3 HOH A 14 714 54 HOH HOH . C 3 HOH A 15 715 1 HOH HOH . C 3 HOH A 16 716 50 HOH HOH . C 3 HOH A 17 717 10 HOH HOH . C 3 HOH A 18 718 43 HOH HOH . C 3 HOH A 19 719 4 HOH HOH . C 3 HOH A 20 720 30 HOH HOH . C 3 HOH A 21 721 61 HOH HOH . C 3 HOH A 22 722 11 HOH HOH . C 3 HOH A 23 723 26 HOH HOH . C 3 HOH A 24 724 9 HOH HOH . C 3 HOH A 25 725 15 HOH HOH . C 3 HOH A 26 726 46 HOH HOH . C 3 HOH A 27 727 55 HOH HOH . C 3 HOH A 28 728 2 HOH HOH . C 3 HOH A 29 729 37 HOH HOH . C 3 HOH A 30 730 53 HOH HOH . C 3 HOH A 31 731 20 HOH HOH . C 3 HOH A 32 732 23 HOH HOH . C 3 HOH A 33 733 28 HOH HOH . C 3 HOH A 34 734 14 HOH HOH . C 3 HOH A 35 735 40 HOH HOH . C 3 HOH A 36 736 7 HOH HOH . C 3 HOH A 37 737 38 HOH HOH . C 3 HOH A 38 738 64 HOH HOH . C 3 HOH A 39 739 17 HOH HOH . C 3 HOH A 40 740 27 HOH HOH . C 3 HOH A 41 741 19 HOH HOH . C 3 HOH A 42 742 48 HOH HOH . C 3 HOH A 43 743 21 HOH HOH . C 3 HOH A 44 744 36 HOH HOH . C 3 HOH A 45 745 49 HOH HOH . C 3 HOH A 46 746 25 HOH HOH . C 3 HOH A 47 747 18 HOH HOH . C 3 HOH A 48 748 24 HOH HOH . C 3 HOH A 49 749 57 HOH HOH . C 3 HOH A 50 750 31 HOH HOH . C 3 HOH A 51 751 32 HOH HOH . C 3 HOH A 52 752 42 HOH HOH . C 3 HOH A 53 753 65 HOH HOH . C 3 HOH A 54 754 63 HOH HOH . C 3 HOH A 55 755 52 HOH HOH . C 3 HOH A 56 756 59 HOH HOH . C 3 HOH A 57 757 44 HOH HOH . C 3 HOH A 58 758 58 HOH HOH . C 3 HOH A 59 759 34 HOH HOH . C 3 HOH A 60 760 16 HOH HOH . C 3 HOH A 61 761 22 HOH HOH . C 3 HOH A 62 762 56 HOH HOH . C 3 HOH A 63 763 45 HOH HOH . C 3 HOH A 64 764 47 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 H7C . . . B 2 82.908 140.889 15.044 1 50.21 ? C10 H7C 601 A 1 HETATM 2 C C11 H7C . . . B 2 81.206 143.814 18.473 1 47.94 ? C11 H7C 601 A 1 HETATM 3 C C12 H7C . . . B 2 81.204 145.068 19.089 1 50.08 ? C12 H7C 601 A 1 HETATM 4 C C13 H7C . . . B 2 82.048 146.068 18.612 1 45.31 ? C13 H7C 601 A 1 HETATM 5 C C14 H7C . . . B 2 82.885 145.844 17.532 1 46.42 ? C14 H7C 601 A 1 HETATM 6 C C16 H7C . . . B 2 79.274 140.807 16.895 1 62.41 ? C16 H7C 601 A 1 HETATM 7 O O17 H7C . . . B 2 83.872 139.496 13.233 1 55.46 ? O17 H7C 601 A 1 HETATM 8 C C19 H7C . . . B 2 79.374 144.456 20.548 1 43.92 ? C19 H7C 601 A 1 HETATM 9 C C21 H7C . . . B 2 78.761 142.036 16.168 1 55.77 ? C21 H7C 601 A 1 HETATM 10 C C22 H7C . . . B 2 78.4 141.579 14.781 1 53.87 ? C22 H7C 601 A 1 HETATM 11 C C24 H7C . . . B 2 78.036 139.267 15.285 1 57.73 ? C24 H7C 601 A 1 HETATM 12 C C25 H7C . . . B 2 79.329 139.533 16.025 1 62.35 ? C25 H7C 601 A 1 HETATM 13 C C01 H7C . . . B 2 82.046 142.371 16.755 1 47.39 ? C01 H7C 601 A 1 HETATM 14 C C02 H7C . . . B 2 82.053 143.587 17.38 1 53.33 ? C02 H7C 601 A 1 HETATM 15 C C03 H7C . . . B 2 82.886 144.597 16.921 1 47.87 ? C03 H7C 601 A 1 HETATM 16 C C05 H7C . . . B 2 83.706 143.152 15.273 1 48.33 ? C05 H7C 601 A 1 HETATM 17 C C06 H7C . . . B 2 82.882 142.127 15.703 1 51.28 ? C06 H7C 601 A 1 HETATM 18 C C07 H7C . . . B 2 84.544 142.958 14.2 1 50.28 ? C07 H7C 601 A 1 HETATM 19 C C08 H7C . . . B 2 84.577 141.744 13.552 1 50.77 ? C08 H7C 601 A 1 HETATM 20 C C09 H7C . . . B 2 83.764 140.705 13.957 1 53.39 ? C09 H7C 601 A 1 HETATM 21 C C20 H7C . . . B 2 82.838 138.567 13.424 1 57.16 ? C20 H7C 601 A 1 HETATM 22 N N04 H7C . . . B 2 83.705 144.365 15.877 1 47.41 ? N04 H7C 601 A 1 HETATM 23 N N23 H7C . . . B 2 77.415 140.543 14.963 1 62.15 ? N23 H7C 601 A 1 HETATM 24 O O18 H7C . . . B 2 80.377 145.368 20.194 1 50.05 ? O18 H7C 601 A 1 HETATM 25 S S15 H7C . . . B 2 80.981 141.077 17.426 1 49.25 ? S15 H7C 601 A 1 # _model_server_stats.io_time_ms 38 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 416 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 25 #