data_7DHC # _model_server_result.job_id yWsM897A_Zhna0zNPJPJAQ _model_server_result.datetime_utc '2024-10-12 03:24:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7dhc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 7DHC # _exptl.entry_id 7DHC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 418.5 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-[bis(fluoranyl)methyl]-2,7-dimethoxy-9-(piperidin-4-ylmethylsulfanyl)acridine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7DHC _cell.length_a 64.427 _cell.length_b 128.382 _cell.length_c 132.446 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7DHC _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C THR 167 A THR 381 1_555 A N PTR 168 A PTR 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale2 A C PTR 168 A PTR 382 1_555 A N ILE 169 A ILE 383 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale3 A C SER 243 A SER 457 1_555 A N SEP 244 A SEP 458 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale4 A C SEP 244 A SEP 458 1_555 A N LYS 245 A LYS 459 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? # _chem_comp.formula 'C22 H24 F2 N2 O2 S' _chem_comp.formula_weight 418.5 _chem_comp.id H99 _chem_comp.mon_nstd_flag . _chem_comp.name 4-[bis(fluoranyl)methyl]-2,7-dimethoxy-9-(piperidin-4-ylmethylsulfanyl)acridine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C26 O25 H99 sing 129 n n C19 N20 H99 sing 130 n n C19 C18 H99 sing 131 n n O25 C13 H99 sing 132 n n C12 C13 H99 sing 133 n y C12 C11 H99 doub 134 n y N20 C21 H99 sing 135 n n F29 C27 H99 sing 136 n n C27 F28 H99 sing 137 n n C27 C11 H99 sing 138 n n C13 C08 H99 doub 139 n y C11 C10 H99 sing 140 n y C21 C22 H99 sing 141 n n C18 C17 H99 sing 142 n n C08 C09 H99 sing 143 n y C17 C22 H99 sing 144 n n C17 C16 H99 sing 145 n n C10 C09 H99 sing 146 n y C10 N07 H99 doub 147 n y C09 C14 H99 doub 148 n y N07 C04 H99 sing 149 n y C16 S15 H99 sing 150 n n C14 S15 H99 sing 151 n n C14 C05 H99 sing 152 n y C04 C05 H99 sing 153 n y C04 C03 H99 doub 154 n y C05 C06 H99 doub 155 n y C03 C02 H99 sing 156 n y C06 C01 H99 sing 157 n y C02 C01 H99 doub 158 n y C01 O23 H99 sing 159 n n O23 C24 H99 sing 160 n n C17 H1 H99 sing 161 n n C21 H2 H99 sing 162 n n C21 H3 H99 sing 163 n n C22 H4 H99 sing 164 n n C22 H5 H99 sing 165 n n C24 H6 H99 sing 166 n n C24 H7 H99 sing 167 n n C24 H8 H99 sing 168 n n C26 H9 H99 sing 169 n n C26 H10 H99 sing 170 n n C26 H11 H99 sing 171 n n C02 H12 H99 sing 172 n n C03 H13 H99 sing 173 n n C06 H14 H99 sing 174 n n C08 H15 H99 sing 175 n n C12 H16 H99 sing 176 n n C16 H17 H99 sing 177 n n C16 H18 H99 sing 178 n n C18 H19 H99 sing 179 n n C18 H20 H99 sing 180 n n C19 H21 H99 sing 181 n n C19 H22 H99 sing 182 n n C27 H23 H99 sing 183 n n N20 H24 H99 sing 184 n n # _atom_sites.entry_id 7DHC _atom_sites.fract_transf_matrix[1][1] 0.015521 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007789 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00755 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 H99 A 1 601 539 H99 LIG . C 3 HOH A 1 701 49 HOH HOH . C 3 HOH A 2 702 32 HOH HOH . C 3 HOH A 3 703 12 HOH HOH . C 3 HOH A 4 704 25 HOH HOH . C 3 HOH A 5 705 28 HOH HOH . C 3 HOH A 6 706 16 HOH HOH . C 3 HOH A 7 707 7 HOH HOH . C 3 HOH A 8 708 2 HOH HOH . C 3 HOH A 9 709 18 HOH HOH . C 3 HOH A 10 710 5 HOH HOH . C 3 HOH A 11 711 6 HOH HOH . C 3 HOH A 12 712 30 HOH HOH . C 3 HOH A 13 713 9 HOH HOH . C 3 HOH A 14 714 13 HOH HOH . C 3 HOH A 15 715 1 HOH HOH . C 3 HOH A 16 716 27 HOH HOH . C 3 HOH A 17 717 23 HOH HOH . C 3 HOH A 18 718 3 HOH HOH . C 3 HOH A 19 719 20 HOH HOH . C 3 HOH A 20 720 14 HOH HOH . C 3 HOH A 21 721 10 HOH HOH . C 3 HOH A 22 722 39 HOH HOH . C 3 HOH A 23 723 15 HOH HOH . C 3 HOH A 24 724 19 HOH HOH . C 3 HOH A 25 725 45 HOH HOH . C 3 HOH A 26 726 29 HOH HOH . C 3 HOH A 27 727 21 HOH HOH . C 3 HOH A 28 728 34 HOH HOH . C 3 HOH A 29 729 44 HOH HOH . C 3 HOH A 30 730 4 HOH HOH . C 3 HOH A 31 731 11 HOH HOH . C 3 HOH A 32 732 42 HOH HOH . C 3 HOH A 33 733 51 HOH HOH . C 3 HOH A 34 734 33 HOH HOH . C 3 HOH A 35 735 17 HOH HOH . C 3 HOH A 36 736 38 HOH HOH . C 3 HOH A 37 737 37 HOH HOH . C 3 HOH A 38 738 41 HOH HOH . C 3 HOH A 39 739 36 HOH HOH . C 3 HOH A 40 740 43 HOH HOH . C 3 HOH A 41 741 48 HOH HOH . C 3 HOH A 42 742 24 HOH HOH . C 3 HOH A 43 743 22 HOH HOH . C 3 HOH A 44 744 35 HOH HOH . C 3 HOH A 45 745 26 HOH HOH . C 3 HOH A 46 746 31 HOH HOH . C 3 HOH A 47 747 47 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 H99 . . . B 2 83.376 143.277 15.707 1 32.07 ? C10 H99 601 A 1 HETATM 2 C C13 H99 . . . B 2 83.517 140.794 14.373 1 48.36 ? C13 H99 601 A 1 HETATM 3 C C17 H99 . . . B 2 79.018 140.407 15.582 1 51.9 ? C17 H99 601 A 1 HETATM 4 C C21 H99 . . . B 2 78.961 137.986 14.676 1 71.84 ? C21 H99 601 A 1 HETATM 5 C C22 H99 . . . B 2 79.227 138.924 15.917 1 63.31 ? C22 H99 601 A 1 HETATM 6 C C24 H99 . . . B 2 79.015 143.898 21.132 1 31.95 ? C24 H99 601 A 1 HETATM 7 C C26 H99 . . . B 2 84.484 139.578 12.595 1 48.24 ? C26 H99 601 A 1 HETATM 8 C C01 H99 . . . B 2 80.572 144.856 19.548 1 30.93 ? C01 H99 601 A 1 HETATM 9 C C02 H99 . . . B 2 81.386 145.926 19.158 1 33.16 ? C02 H99 601 A 1 HETATM 10 C C03 H99 . . . B 2 82.298 145.821 18.09 1 30.76 ? C03 H99 601 A 1 HETATM 11 C C04 H99 . . . B 2 82.4 144.615 17.414 1 31.85 ? C04 H99 601 A 1 HETATM 12 C C05 H99 . . . B 2 81.59 143.541 17.798 1 35.35 ? C05 H99 601 A 1 HETATM 13 C C06 H99 . . . B 2 80.674 143.641 18.857 1 29.64 ? C06 H99 601 A 1 HETATM 14 C C08 H99 . . . B 2 82.631 140.958 15.444 1 42.16 ? C08 H99 601 A 1 HETATM 15 C C09 H99 . . . B 2 82.571 142.208 16.101 1 34.58 ? C09 H99 601 A 1 HETATM 16 C C11 H99 . . . B 2 84.271 143.105 14.628 1 36.11 ? C11 H99 601 A 1 HETATM 17 C C12 H99 . . . B 2 84.33 141.872 13.972 1 42.86 ? C12 H99 601 A 1 HETATM 18 C C14 H99 . . . B 2 81.696 142.353 17.13 1 32.45 ? C14 H99 601 A 1 HETATM 19 C C16 H99 . . . B 2 78.963 141.159 16.903 1 47.38 ? C16 H99 601 A 1 HETATM 20 C C18 H99 . . . B 2 77.715 140.616 14.821 1 49.33 ? C18 H99 601 A 1 HETATM 21 C C19 H99 . . . B 2 77.757 139.702 13.59 1 59.81 ? C19 H99 601 A 1 HETATM 22 C C27 H99 . . . B 2 85.202 144.214 14.086 1 47.43 ? C27 H99 601 A 1 HETATM 23 F F28 H99 . . . B 2 84.907 145.513 14.441 1 49.54 ? F28 H99 601 A 1 HETATM 24 F F29 H99 . . . B 2 86.517 143.856 14.056 1 55.28 ? F29 H99 601 A 1 HETATM 25 N N07 H99 . . . B 2 83.285 144.477 16.382 1 28.88 ? N07 H99 601 A 1 HETATM 26 N N20 H99 . . . B 2 77.721 138.33 13.989 1 69.29 ? N20 H99 601 A 1 HETATM 27 O O23 H99 . . . B 2 79.677 145.039 20.629 1 40.54 ? O23 H99 601 A 1 HETATM 28 O O25 H99 . . . B 2 83.598 139.554 13.696 1 44.96 ? O25 H99 601 A 1 HETATM 29 S S15 H99 . . . B 2 80.645 140.936 17.608 1 43.33 ? S15 H99 601 A 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 29 #