data_7DHE
#
_model_server_result.job_id            HE5zNX16U2rkw0N70mRGDw 
_model_server_result.datetime_utc      '2024-10-14 14:20:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7dhe 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":201}' 
#
_entry.id    7DHE 
#
_exptl.entry_id    7DHE 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              172.118 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'benzylphosphonic acid' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         101.85 
_cell.angle_beta          95.56 
_cell.angle_gamma         103.79 
_cell.entry_id            7DHE 
_cell.length_a            44.11 
_cell.length_b            51.01 
_cell.length_c            68.59 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7DHE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E 1 1 
B,F 2 1 
C,G 3 1 
D,H 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 64 A CYS 61 1_555 B SG CYS 64 B CYS 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? 
disulf ? disulf2 C SG CYS 64 C CYS 61 1_555 D SG CYS 64 D CYS 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
#
_chem_comp.formula           'C7 H9 O3 P' 
_chem_comp.formula_weight    172.118 
_chem_comp.id                B85 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'benzylphosphonic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C6 C1 B85 doub 70 n y 
C2 C1 B85 sing 71 n y 
C1 H1 B85 sing 72 n n 
C3 C2 B85 doub 73 n y 
C2 H2 B85 sing 74 n n 
C4 C3 B85 sing 75 n y 
C3 H3 B85 sing 76 n n 
C4 C5 B85 doub 77 n y 
C4 H4 B85 sing 78 n n 
C5 C6 B85 sing 79 n y 
C5 H5 B85 sing 80 n n 
C6 C7 B85 sing 81 n n 
P8 C7 B85 sing 82 n n 
C7 H7 B85 sing 83 n n 
C7 H7A B85 sing 84 n n 
O9 P8 B85 doub 85 n n 
O11 P8 B85 sing 86 n n 
P8 O10 B85 sing 87 n n 
O10 HO10 B85 sing 88 n n 
O11 HO11 B85 sing 89 n n 
#
_atom_sites.entry_id                     7DHE 
_atom_sites.fract_transf_matrix[1][1]    0.022671 
_atom_sites.fract_transf_matrix[1][2]    0.005564 
_atom_sites.fract_transf_matrix[1][3]    0.003625 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.020186 
_atom_sites.fract_transf_matrix[2][3]    0.00491 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015075 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 B85 A 1 201 201 B85 B85 . 
F 2 B85 B 1 201 201 B85 B85 . 
G 2 B85 C 1 201 201 B85 B85 . 
H 2 B85 D 1 201 201 B85 B85 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 B85 . . . H 2 5.45 37.305 -25.43 1 88.33 ? C1 B85 201 D 1 
HETATM 2 C C2 B85 . . . H 2 4.987 38.016 -26.528 1 87.56 ? C2 B85 201 D 1 
HETATM 3 C C3 B85 . . . H 2 4.789 37.379 -27.738 1 86.63 ? C3 B85 201 D 1 
HETATM 4 C C4 B85 . . . H 2 5.037 36.025 -27.845 1 89.56 ? C4 B85 201 D 1 
HETATM 5 C C5 B85 . . . H 2 5.493 35.311 -26.746 1 92.34 ? C5 B85 201 D 1 
HETATM 6 C C6 B85 . . . H 2 5.726 35.946 -25.529 1 91.55 ? C6 B85 201 D 1 
HETATM 7 C C7 B85 . . . H 2 6.321 35.192 -24.363 1 91.47 ? C7 B85 201 D 1 
HETATM 8 P P8 B85 . . . H 2 8.015 34.636 -24.576 1 91.19 ? P8 B85 201 D 1 
HETATM 9 O O9 B85 . . . H 2 8.25 34.072 -25.944 1 87.82 ? O9 B85 201 D 1 
HETATM 10 O O10 B85 . . . H 2 8.909 35.877 -24.324 1 93.32 ? O10 B85 201 D 1 
HETATM 11 O O11 B85 . . . H 2 8.284 33.617 -23.447 1 89.32 ? O11 B85 201 D 1 
#
_model_server_stats.io_time_ms              29 
_model_server_stats.parse_time_ms           64 
_model_server_stats.create_model_time_ms    22 
_model_server_stats.query_time_ms           533 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           11 
#