data_7DHL # _model_server_result.job_id 5yWtogWlTuLNmASmRp9L7Q _model_server_result.datetime_utc '2024-12-13 03:38:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7dhl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":801}' # _entry.id 7DHL # _exptl.entry_id 7DHL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 546.704 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-[2-(3,5-dimethoxyphenyl)ethyl]-N-[3-methoxy-4-[4-(4-methylpiperazin-1-yl)piperidin-1-yl]phenyl]pyrimidin-2-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 112.88 _cell.angle_gamma 90 _cell.entry_id 7DHL _cell.length_a 48.14 _cell.length_b 61.4 _cell.length_c 59.895 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7DHL _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ASP 130 A ASP 576 1_555 A N PTR 131 A PTR 577 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale2 A C PTR 131 A PTR 577 1_555 A N SER 132 A SER 578 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale3 A C ASP 200 A ASP 646 1_555 A N PTR 201 A PTR 647 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale4 A C PTR 201 A PTR 647 1_555 A N PTR 202 A PTR 648 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale5 A C PTR 202 A PTR 648 1_555 A N LYS 203 A LYS 649 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? # _chem_comp.formula 'C31 H42 N6 O3' _chem_comp.formula_weight 546.704 _chem_comp.id H6X _chem_comp.mon_nstd_flag . _chem_comp.name 5-[2-(3,5-dimethoxyphenyl)ethyl]-N-[3-methoxy-4-[4-(4-methylpiperazin-1-yl)piperidin-1-yl]phenyl]pyrimidin-2-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C29 N28 H6X sing 129 n n C29 C30 H6X sing 130 n n N28 C31 H6X sing 131 n n N28 C27 H6X sing 132 n n C27 C26 H6X sing 133 n n C30 N25 H6X sing 134 n n C26 N25 H6X sing 135 n n N25 C22 H6X sing 136 n n C23 C22 H6X sing 137 n n C23 C24 H6X sing 138 n n C22 C21 H6X sing 139 n n C24 N19 H6X sing 140 n n C21 C20 H6X sing 141 n n O39 C40 H6X sing 142 n n O39 C15 H6X sing 143 n n N19 C20 H6X sing 144 n n N19 C16 H6X sing 145 n n C15 C16 H6X doub 146 n y C15 C14 H6X sing 147 n y C16 C17 H6X sing 148 n y C14 C13 H6X doub 149 n y C17 C18 H6X doub 150 n y N33 C37 H6X doub 151 n y N33 C34 H6X sing 152 n y C13 C18 H6X sing 153 n y C13 N12 H6X sing 154 n n C37 C36 H6X sing 155 n y C1 C2 H6X sing 156 n n C1 C38 H6X sing 157 n n C2 C3 H6X doub 158 n y C2 C7 H6X sing 159 n y C3 C4 H6X sing 160 n y C7 C6 H6X doub 161 n y C4 O8 H6X sing 162 n n C4 C5 H6X doub 163 n y O8 C11 H6X sing 164 n n C34 N12 H6X sing 165 n n C34 N35 H6X doub 166 n y C6 C5 H6X sing 167 n y C6 O9 H6X sing 168 n n C36 C38 H6X sing 169 n n C36 C32 H6X doub 170 n y O9 C10 H6X sing 171 n n N35 C32 H6X sing 172 n y C1 H1 H6X sing 173 n n C1 H2 H6X sing 174 n n C3 H3 H6X sing 175 n n C5 H4 H6X sing 176 n n C7 H5 H6X sing 177 n n C10 H6 H6X sing 178 n n C10 H7 H6X sing 179 n n C10 H8 H6X sing 180 n n C11 H9 H6X sing 181 n n C11 H10 H6X sing 182 n n C11 H11 H6X sing 183 n n N12 H12 H6X sing 184 n n C14 H13 H6X sing 185 n n C17 H14 H6X sing 186 n n C18 H15 H6X sing 187 n n C20 H16 H6X sing 188 n n C20 H17 H6X sing 189 n n C21 H18 H6X sing 190 n n C21 H19 H6X sing 191 n n C22 H20 H6X sing 192 n n C23 H21 H6X sing 193 n n C23 H22 H6X sing 194 n n C24 H23 H6X sing 195 n n C24 H24 H6X sing 196 n n C26 H26 H6X sing 197 n n C26 H27 H6X sing 198 n n C27 H28 H6X sing 199 n n C27 H29 H6X sing 200 n n C29 H31 H6X sing 201 n n C29 H32 H6X sing 202 n n C30 H33 H6X sing 203 n n C30 H34 H6X sing 204 n n C31 H35 H6X sing 205 n n C31 H36 H6X sing 206 n n C31 H37 H6X sing 207 n n C32 H38 H6X sing 208 n n C37 H39 H6X sing 209 n n C38 H40 H6X sing 210 n n C38 H41 H6X sing 211 n n C40 H42 H6X sing 212 n n C40 H43 H6X sing 213 n n C40 H44 H6X sing 214 n n # _atom_sites.entry_id 7DHL _atom_sites.fract_transf_matrix[1][1] 0.020773 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.008766 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016287 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018122 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 H6X A 1 801 1 H6X UNL . C 3 HOH A 1 901 8 HOH HOH . C 3 HOH A 2 902 39 HOH HOH . C 3 HOH A 3 903 58 HOH HOH . C 3 HOH A 4 904 35 HOH HOH . C 3 HOH A 5 905 24 HOH HOH . C 3 HOH A 6 906 30 HOH HOH . C 3 HOH A 7 907 53 HOH HOH . C 3 HOH A 8 908 4 HOH HOH . C 3 HOH A 9 909 17 HOH HOH . C 3 HOH A 10 910 37 HOH HOH . C 3 HOH A 11 911 7 HOH HOH . C 3 HOH A 12 912 38 HOH HOH . C 3 HOH A 13 913 59 HOH HOH . C 3 HOH A 14 914 10 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 H6X . . . B 2 -1.411 -2.227 14.146 1 31.94 ? C1 H6X 801 A 1 HETATM 2 C C2 H6X . . . B 2 -0.704 -3.505 14.453 1 33.17 ? C2 H6X 801 A 1 HETATM 3 C C3 H6X . . . B 2 -1.371 -4.737 14.537 1 32.4 ? C3 H6X 801 A 1 HETATM 4 C C4 H6X . . . B 2 -0.668 -5.921 14.795 1 32.09 ? C4 H6X 801 A 1 HETATM 5 C C5 H6X . . . B 2 0.711 -5.887 14.963 1 32.83 ? C5 H6X 801 A 1 HETATM 6 C C6 H6X . . . B 2 1.376 -4.662 14.883 1 34.32 ? C6 H6X 801 A 1 HETATM 7 C C7 H6X . . . B 2 0.676 -3.48 14.639 1 32.48 ? C7 H6X 801 A 1 HETATM 8 O O8 H6X . . . B 2 -1.357 -7.134 14.87 1 34.45 ? O8 H6X 801 A 1 HETATM 9 O O9 H6X . . . B 2 2.755 -4.574 15.061 1 35.64 ? O9 H6X 801 A 1 HETATM 10 C C10 H6X . . . B 2 3.32 -5.871 15.088 1 34.5 ? C10 H6X 801 A 1 HETATM 11 C C11 H6X . . . B 2 -0.445 -8.234 14.898 1 30.23 ? C11 H6X 801 A 1 HETATM 12 N N12 H6X . . . B 2 -4.616 3.339 14.916 1 40.96 ? N12 H6X 801 A 1 HETATM 13 C C13 H6X . . . B 2 -5.124 4.034 13.81 1 49.9 ? C13 H6X 801 A 1 HETATM 14 C C14 H6X . . . B 2 -4.86 3.616 12.506 1 52.58 ? C14 H6X 801 A 1 HETATM 15 C C15 H6X . . . B 2 -5.394 4.339 11.432 1 63.32 ? C15 H6X 801 A 1 HETATM 16 C C16 H6X . . . B 2 -6.198 5.493 11.635 1 62.55 ? C16 H6X 801 A 1 HETATM 17 C C17 H6X . . . B 2 -6.453 5.915 12.943 1 54.46 ? C17 H6X 801 A 1 HETATM 18 C C18 H6X . . . B 2 -5.922 5.175 14.006 1 54.84 ? C18 H6X 801 A 1 HETATM 19 N N19 H6X . . . B 2 -6.782 6.277 10.62 1 71.55 ? N19 H6X 801 A 1 HETATM 20 C C20 H6X . . . B 2 -7.588 7.459 10.985 1 77.73 ? C20 H6X 801 A 1 HETATM 21 C C21 H6X . . . B 2 -7.743 8.435 9.804 1 91.09 ? C21 H6X 801 A 1 HETATM 22 C C22 H6X . . . B 2 -8.355 7.757 8.562 1 95.82 ? C22 H6X 801 A 1 HETATM 23 C C23 H6X . . . B 2 -7.821 6.335 8.298 1 86.09 ? C23 H6X 801 A 1 HETATM 24 C C24 H6X . . . B 2 -6.621 5.951 9.18 1 77.69 ? C24 H6X 801 A 1 HETATM 25 N N25 H6X . . . B 2 -8.467 8.7 7.376 1 99.41 ? N25 H6X 801 A 1 HETATM 26 C C26 H6X . . . B 2 -9.832 9.364 7.235 1 102.99 ? C26 H6X 801 A 1 HETATM 27 C C27 H6X . . . B 2 -10.41 9.292 5.82 1 101.45 ? C27 H6X 801 A 1 HETATM 28 N N28 H6X . . . B 2 -10.07 7.995 5.108 1 99.29 ? N28 H6X 801 A 1 HETATM 29 C C29 H6X . . . B 2 -8.604 7.602 5.08 1 92.86 ? C29 H6X 801 A 1 HETATM 30 C C30 H6X . . . B 2 -7.742 8.376 6.075 1 95.88 ? C30 H6X 801 A 1 HETATM 31 C C31 H6X . . . B 2 -11.021 6.871 5.325 1 93.54 ? C31 H6X 801 A 1 HETATM 32 C C32 H6X . . . B 2 -3.111 0.358 16.119 1 33.1 ? C32 H6X 801 A 1 HETATM 33 N N33 H6X . . . B 2 -3.923 1.326 13.735 1 32.11 ? N33 H6X 801 A 1 HETATM 34 C C34 H6X . . . B 2 -4.058 2.047 14.88 1 36.56 ? C34 H6X 801 A 1 HETATM 35 N N35 H6X . . . B 2 -3.656 1.591 16.088 1 35.92 ? N35 H6X 801 A 1 HETATM 36 C C36 H6X . . . B 2 -2.942 -0.453 15.017 1 32.09 ? C36 H6X 801 A 1 HETATM 37 C C37 H6X . . . B 2 -3.367 0.083 13.815 1 30 ? C37 H6X 801 A 1 HETATM 38 C C38 H6X . . . B 2 -2.331 -1.796 15.238 1 33.29 ? C38 H6X 801 A 1 HETATM 39 O O39 H6X . . . B 2 -5.079 3.844 10.164 1 68.23 ? O39 H6X 801 A 1 HETATM 40 C C40 H6X . . . B 2 -3.746 3.3 10.198 1 60.32 ? C40 H6X 801 A 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 40 #