data_7DHO # _model_server_result.job_id HpUcBNOSxnlcpsNEoNUwyg _model_server_result.datetime_utc '2024-11-22 23:14:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7dho # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 7DHO # _exptl.entry_id 7DHO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 396.546 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-methoxy-9-(piperidin-4-ylmethylsulfanyl)-7-propan-2-yloxy-acridine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7DHO _cell.length_a 64.61 _cell.length_b 128.87 _cell.length_c 133.74 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7DHO _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C THR 167 A THR 381 1_555 A N PTR 168 A PTR 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale2 A C PTR 168 A PTR 382 1_555 A N ILE 169 A ILE 383 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale3 A C SER 243 A SER 457 1_555 A N SEP 244 A SEP 458 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 A C SEP 244 A SEP 458 1_555 A N LYS 245 A LYS 459 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'C23 H28 N2 O2 S' _chem_comp.formula_weight 396.546 _chem_comp.id H7U _chem_comp.mon_nstd_flag . _chem_comp.name 2-methoxy-9-(piperidin-4-ylmethylsulfanyl)-7-propan-2-yloxy-acridine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C27 C17 H7U sing 129 n n O02 C17 H7U sing 130 n n O02 C16 H7U sing 131 n n C17 C28 H7U sing 132 n n C15 C16 H7U sing 133 n y C15 C14 H7U doub 134 n y C23 N24 H7U sing 135 n n C23 C22 H7U sing 136 n n C16 C11 H7U doub 137 n y C14 C13 H7U sing 138 n y N24 C25 H7U sing 139 n n C22 C21 H7U sing 140 n n C11 C12 H7U sing 141 n y C13 C12 H7U sing 142 n y C13 N10 H7U doub 143 n y C25 C26 H7U sing 144 n n C12 C18 H7U doub 145 n y C21 C26 H7U sing 146 n n C21 C20 H7U sing 147 n n N10 C09 H7U sing 148 n y C20 S19 H7U sing 149 n n C18 S19 H7U sing 150 n n C18 C08 H7U sing 151 n y C09 C08 H7U doub 152 n y C09 C07 H7U sing 153 n y C08 C04 H7U sing 154 n y C07 C06 H7U doub 155 n y C04 C05 H7U doub 156 n y C06 C05 H7U sing 157 n y C05 O03 H7U sing 158 n n O03 C01 H7U sing 159 n n C15 H1 H7U sing 160 n n C17 H2 H7U sing 161 n n C20 H3 H7U sing 162 n n C20 H4 H7U sing 163 n n C21 H5 H7U sing 164 n n C22 H6 H7U sing 165 n n C22 H7 H7U sing 166 n n C26 H8 H7U sing 167 n n C26 H9 H7U sing 168 n n C28 H10 H7U sing 169 n n C28 H11 H7U sing 170 n n C28 H12 H7U sing 171 n n C01 H13 H7U sing 172 n n C01 H14 H7U sing 173 n n C01 H15 H7U sing 174 n n C04 H16 H7U sing 175 n n C06 H17 H7U sing 176 n n C07 H18 H7U sing 177 n n C11 H19 H7U sing 178 n n C14 H20 H7U sing 179 n n C23 H21 H7U sing 180 n n C23 H22 H7U sing 181 n n C25 H23 H7U sing 182 n n C25 H24 H7U sing 183 n n C27 H25 H7U sing 184 n n C27 H26 H7U sing 185 n n C27 H27 H7U sing 186 n n N24 H28 H7U sing 187 n n # _atom_sites.entry_id 7DHO _atom_sites.fract_transf_matrix[1][1] 0.015477 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00776 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007477 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id H7U _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 601 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id H7U _pdbx_nonpoly_scheme.auth_mon_id LIG _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C13 H7U . . . B 2 84.205 143.303 15.203 1 39.33 ? C13 H7U 601 A 1 HETATM 2 C C15 H7U . . . B 2 85.187 141.919 13.491 1 49.74 ? C15 H7U 601 A 1 HETATM 3 C C17 H7U . . . B 2 83.548 138.64 13.466 1 42.86 ? C17 H7U 601 A 1 HETATM 4 C C20 H7U . . . B 2 79.78 141.222 16.645 1 50.49 ? C20 H7U 601 A 1 HETATM 5 C C21 H7U . . . B 2 79.447 140.024 15.742 1 65.25 ? C21 H7U 601 A 1 HETATM 6 C C22 H7U . . . B 2 78.631 140.474 14.534 1 72.24 ? C22 H7U 601 A 1 HETATM 7 C C26 H7U . . . B 2 78.654 138.956 16.537 1 72.51 ? C26 H7U 601 A 1 HETATM 8 C C28 H7U . . . B 2 84.164 137.449 14.293 1 42.19 ? C28 H7U 601 A 1 HETATM 9 C C01 H7U . . . B 2 79.53 144.541 20.217 1 45.69 ? C01 H7U 601 A 1 HETATM 10 C C04 H7U . . . B 2 81.607 143.862 18.414 1 39.85 ? C04 H7U 601 A 1 HETATM 11 C C05 H7U . . . B 2 81.543 145.11 19.028 1 41 ? C05 H7U 601 A 1 HETATM 12 C C06 H7U . . . B 2 82.341 146.142 18.568 1 40.94 ? C06 H7U 601 A 1 HETATM 13 C C07 H7U . . . B 2 83.218 145.939 17.478 1 41.93 ? C07 H7U 601 A 1 HETATM 14 C C08 H7U . . . B 2 82.494 143.653 17.308 1 41.37 ? C08 H7U 601 A 1 HETATM 15 C C09 H7U . . . B 2 83.282 144.699 16.86 1 41.24 ? C09 H7U 601 A 1 HETATM 16 C C11 H7U . . . B 2 83.53 141.032 14.989 1 40.69 ? C11 H7U 601 A 1 HETATM 17 C C12 H7U . . . B 2 83.436 142.256 15.625 1 34.87 ? C12 H7U 601 A 1 HETATM 18 C C14 H7U . . . B 2 85.087 143.137 14.133 1 48.03 ? C14 H7U 601 A 1 HETATM 19 C C16 H7U . . . B 2 84.425 140.85 13.894 1 45.33 ? C16 H7U 601 A 1 HETATM 20 C C18 H7U . . . B 2 82.569 142.439 16.679 1 38.01 ? C18 H7U 601 A 1 HETATM 21 C C23 H7U . . . B 2 78.253 139.228 13.686 1 77.16 ? C23 H7U 601 A 1 HETATM 22 C C25 H7U . . . B 2 78.215 137.803 15.585 1 78.1 ? C25 H7U 601 A 1 HETATM 23 C C27 H7U . . . B 2 82.953 138.092 12.15 1 42.92 ? C27 H7U 601 A 1 HETATM 24 N N10 H7U . . . B 2 84.126 144.526 15.811 1 37.45 ? N10 H7U 601 A 1 HETATM 25 N N24 H7U . . . B 2 77.473 138.307 14.456 1 80.24 ? N24 H7U 601 A 1 HETATM 26 O O02 H7U . . . B 2 84.566 139.617 13.197 1 42.34 ? O02 H7U 601 A 1 HETATM 27 O O03 H7U . . . B 2 80.677 145.38 20.122 1 43.27 ? O03 H7U 601 A 1 HETATM 28 S S19 H7U . . . B 2 81.521 141.047 17.229 1 41.75 ? S19 H7U 601 A 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 28 #