data_7DHV # _model_server_result.job_id 6YIRMPF5QBE6LWJk7lwprQ _model_server_result.datetime_utc '2024-12-23 10:57:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7dhv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 7DHV # _exptl.entry_id 7DHV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 412.502 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2,7-dimethoxy-9-(piperidin-4-ylmethylsulfanyl)acridine-4-carboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7DHV _cell.length_a 64.546 _cell.length_b 128.782 _cell.length_c 132.735 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7DHV _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C THR 170 A THR 381 1_555 A N PTR 171 A PTR 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale2 A C PTR 171 A PTR 382 1_555 A N ILE 172 A ILE 383 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale3 A C SER 246 A SER 457 1_555 A N SEP 247 A SEP 458 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 A C SEP 247 A SEP 458 1_555 A N LYS 248 A LYS 459 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? # _chem_comp.formula 'C22 H24 N2 O4 S' _chem_comp.formula_weight 412.502 _chem_comp.id H7X _chem_comp.mon_nstd_flag . _chem_comp.name '2,7-dimethoxy-9-(piperidin-4-ylmethylsulfanyl)acridine-4-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 O15 H7X sing 129 n n C21 N22 H7X sing 130 n n C21 C20 H7X sing 131 n n O29 C27 H7X doub 132 n n O15 C13 H7X sing 133 n n N22 C23 H7X sing 134 n n C12 C13 H7X sing 135 n y C12 C11 H7X doub 136 n y C27 O28 H7X sing 137 n n C27 C11 H7X sing 138 n n C13 C08 H7X doub 139 n y C20 C25 H7X sing 140 n n C11 C10 H7X sing 141 n y C23 C24 H7X sing 142 n n C08 C09 H7X sing 143 n y C10 C09 H7X doub 144 n y C10 N07 H7X sing 145 n y C25 C24 H7X sing 146 n n C25 C19 H7X sing 147 n n C09 C16 H7X sing 148 n y N07 C04 H7X doub 149 n y C19 S17 H7X sing 150 n n C16 S17 H7X sing 151 n n C16 C05 H7X doub 152 n y C04 C05 H7X sing 153 n y C04 C03 H7X sing 154 n y C05 C06 H7X sing 155 n y C03 C02 H7X doub 156 n y C06 C01 H7X doub 157 n y C02 C01 H7X sing 158 n y C01 O14 H7X sing 159 n n O14 C26 H7X sing 160 n n C20 H1 H7X sing 161 n n C20 H2 H7X sing 162 n n C21 H3 H7X sing 163 n n C21 H4 H7X sing 164 n n C24 H5 H7X sing 165 n n C24 H6 H7X sing 166 n n C26 H7 H7X sing 167 n n C26 H8 H7X sing 168 n n C26 H9 H7X sing 169 n n C02 H10 H7X sing 170 n n C03 H11 H7X sing 171 n n C06 H12 H7X sing 172 n n C08 H13 H7X sing 173 n n C12 H14 H7X sing 174 n n C18 H15 H7X sing 175 n n C18 H16 H7X sing 176 n n C18 H17 H7X sing 177 n n C19 H18 H7X sing 178 n n C19 H19 H7X sing 179 n n C23 H20 H7X sing 180 n n C23 H21 H7X sing 181 n n C25 H22 H7X sing 182 n n N22 H23 H7X sing 183 n n O28 H25 H7X sing 184 n n # _atom_sites.entry_id 7DHV _atom_sites.fract_transf_matrix[1][1] 0.015493 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007765 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007534 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 H7X A 1 601 1 H7X LIG . C 3 HOH A 1 701 12 HOH HOH . C 3 HOH A 2 702 34 HOH HOH . C 3 HOH A 3 703 15 HOH HOH . C 3 HOH A 4 704 3 HOH HOH . C 3 HOH A 5 705 19 HOH HOH . C 3 HOH A 6 706 17 HOH HOH . C 3 HOH A 7 707 5 HOH HOH . C 3 HOH A 8 708 6 HOH HOH . C 3 HOH A 9 709 1 HOH HOH . C 3 HOH A 10 710 22 HOH HOH . C 3 HOH A 11 711 27 HOH HOH . C 3 HOH A 12 712 4 HOH HOH . C 3 HOH A 13 713 21 HOH HOH . C 3 HOH A 14 714 13 HOH HOH . C 3 HOH A 15 715 9 HOH HOH . C 3 HOH A 16 716 7 HOH HOH . C 3 HOH A 17 717 2 HOH HOH . C 3 HOH A 18 718 33 HOH HOH . C 3 HOH A 19 719 8 HOH HOH . C 3 HOH A 20 720 28 HOH HOH . C 3 HOH A 21 721 23 HOH HOH . C 3 HOH A 22 722 18 HOH HOH . C 3 HOH A 23 723 31 HOH HOH . C 3 HOH A 24 724 29 HOH HOH . C 3 HOH A 25 725 10 HOH HOH . C 3 HOH A 26 726 25 HOH HOH . C 3 HOH A 27 727 16 HOH HOH . C 3 HOH A 28 728 20 HOH HOH . C 3 HOH A 29 729 24 HOH HOH . C 3 HOH A 30 730 14 HOH HOH . C 3 HOH A 31 731 32 HOH HOH . C 3 HOH A 32 732 30 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 H7X . . . B 2 83.567 143.581 15.658 1 39 ? C10 H7X 601 A 1 HETATM 2 C C13 H7X . . . B 2 83.74 141.237 14.246 1 50.2 ? C13 H7X 601 A 1 HETATM 3 C C20 H7X . . . B 2 78.682 140.807 14.293 1 66.84 ? C20 H7X 601 A 1 HETATM 4 C C21 H7X . . . B 2 78.9 139.602 13.368 1 73.89 ? C21 H7X 601 A 1 HETATM 5 C C24 H7X . . . B 2 77.962 139.279 16.115 1 79.89 ? C24 H7X 601 A 1 HETATM 6 C C26 H7X . . . B 2 79.818 145.304 21.587 1 60.73 ? C26 H7X 601 A 1 HETATM 7 C C01 H7X . . . B 2 80.632 144.894 19.446 1 41.55 ? C01 H7X 601 A 1 HETATM 8 C C02 H7X . . . B 2 81.373 146.163 19.305 1 37.81 ? C02 H7X 601 A 1 HETATM 9 C C03 H7X . . . B 2 82.382 146.09 18.173 1 35.1 ? C03 H7X 601 A 1 HETATM 10 C C04 H7X . . . B 2 82.595 144.941 17.35 1 34.29 ? C04 H7X 601 A 1 HETATM 11 C C05 H7X . . . B 2 81.797 143.854 17.641 1 37.01 ? C05 H7X 601 A 1 HETATM 12 C C06 H7X . . . B 2 80.958 143.927 18.59 1 41.55 ? C06 H7X 601 A 1 HETATM 13 C C08 H7X . . . B 2 82.846 141.368 15.284 1 50.17 ? C08 H7X 601 A 1 HETATM 14 C C09 H7X . . . B 2 82.773 142.583 15.99 1 46.13 ? C09 H7X 601 A 1 HETATM 15 C C11 H7X . . . B 2 84.484 143.452 14.594 1 48.85 ? C11 H7X 601 A 1 HETATM 16 C C12 H7X . . . B 2 84.546 142.272 13.912 1 40.27 ? C12 H7X 601 A 1 HETATM 17 C C16 H7X . . . B 2 81.939 142.708 16.928 1 40.88 ? C16 H7X 601 A 1 HETATM 18 C C18 H7X . . . B 2 84.627 140.124 12.372 1 63.74 ? C18 H7X 601 A 1 HETATM 19 C C19 H7X . . . B 2 79.179 141.469 16.692 1 52.34 ? C19 H7X 601 A 1 HETATM 20 C C23 H7X . . . B 2 78.161 138.081 15.172 1 84.5 ? C23 H7X 601 A 1 HETATM 21 C C25 H7X . . . B 2 79.007 140.319 15.699 1 68.71 ? C25 H7X 601 A 1 HETATM 22 C C27 H7X . . . B 2 85.43 144.588 14.16 1 81.6 ? C27 H7X 601 A 1 HETATM 23 N N07 H7X . . . B 2 83.54 144.764 16.286 1 34.39 ? N07 H7X 601 A 1 HETATM 24 N N22 H7X . . . B 2 78.061 138.46 13.755 1 85.7 ? N22 H7X 601 A 1 HETATM 25 O O14 H7X . . . B 2 79.619 144.687 20.379 1 50.22 ? O14 H7X 601 A 1 HETATM 26 O O15 H7X . . . B 2 83.842 140.033 13.533 1 54.7 ? O15 H7X 601 A 1 HETATM 27 O O28 H7X . . . B 2 85.197 145.807 14.418 1 87.95 ? O28 H7X 601 A 1 HETATM 28 O O29 H7X . . . B 2 86.467 144.296 13.5 1 92.53 ? O29 H7X 601 A 1 HETATM 29 S S17 H7X . . . B 2 80.873 141.276 17.361 1 41.95 ? S17 H7X 601 A 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 29 #