data_7DI8
#
_model_server_result.job_id            e6opEYs5H0jSdSsQ_TZ9xw 
_model_server_result.datetime_utc      '2024-11-15 16:26:43' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7di8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":602}' 
#
_entry.id    7DI8 
#
_exptl.entry_id    7DI8 
_exptl.method      'ELECTRON CRYSTALLOGRAPHY' 
#
_entity.details                     ? 
_entity.formula_weight              745.421 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7DI8 
_cell.length_a            69.98 
_cell.length_b            174.02 
_cell.length_c            199.45 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7DI8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 H N N 
? 3 J N N 
? 3 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OH TYR 358 A TYR 357 1_555 E FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? 
metalc ? metalc2 B OH TYR 358 B TYR 357 1_555 G FE HEM . B HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? 
metalc ? metalc3 C OH TYR 358 C TYR 357 1_555 I FE HEM . C HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.451 ? 
metalc ? metalc4 D OH TYR 358 D TYR 357 1_555 K FE HEM . D HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? 
#
_chem_comp.formula           'C21 H30 N7 O17 P3' 
_chem_comp.formula_weight    745.421 
_chem_comp.id                NDP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NDP doub 317 n n 
PA O2A NDP sing 318 n n 
PA O5B NDP sing 319 n n 
PA O3 NDP sing 320 n n 
O2A HOA2 NDP sing 321 n n 
O5B C5B NDP sing 322 n n 
C5B C4B NDP sing 323 n n 
C5B H51A NDP sing 324 n n 
C5B H52A NDP sing 325 n n 
C4B O4B NDP sing 326 n n 
C4B C3B NDP sing 327 n n 
C4B H4B NDP sing 328 n n 
O4B C1B NDP sing 329 n n 
C3B O3B NDP sing 330 n n 
C3B C2B NDP sing 331 n n 
C3B H3B NDP sing 332 n n 
O3B HO3A NDP sing 333 n n 
C2B O2B NDP sing 334 n n 
C2B C1B NDP sing 335 n n 
C2B H2B NDP sing 336 n n 
O2B P2B NDP sing 337 n n 
C1B N9A NDP sing 338 n n 
C1B H1B NDP sing 339 n n 
N9A C8A NDP sing 340 n y 
N9A C4A NDP sing 341 n y 
C8A N7A NDP doub 342 n y 
C8A H8A NDP sing 343 n n 
N7A C5A NDP sing 344 n y 
C5A C6A NDP sing 345 n y 
C5A C4A NDP doub 346 n y 
C6A N6A NDP sing 347 n n 
C6A N1A NDP doub 348 n y 
N6A H61A NDP sing 349 n n 
N6A H62A NDP sing 350 n n 
N1A C2A NDP sing 351 n y 
C2A N3A NDP doub 352 n y 
C2A H2A NDP sing 353 n n 
N3A C4A NDP sing 354 n y 
O3 PN NDP sing 355 n n 
PN O1N NDP doub 356 n n 
PN O2N NDP sing 357 n n 
PN O5D NDP sing 358 n n 
O2N H21N NDP sing 359 n n 
O5D C5D NDP sing 360 n n 
C5D C4D NDP sing 361 n n 
C5D H51N NDP sing 362 n n 
C5D H52N NDP sing 363 n n 
C4D O4D NDP sing 364 n n 
C4D C3D NDP sing 365 n n 
C4D H4D NDP sing 366 n n 
O4D C1D NDP sing 367 n n 
C3D O3D NDP sing 368 n n 
C3D C2D NDP sing 369 n n 
C3D H3D NDP sing 370 n n 
O3D HO3N NDP sing 371 n n 
C2D O2D NDP sing 372 n n 
C2D C1D NDP sing 373 n n 
C2D H2D NDP sing 374 n n 
O2D HO2N NDP sing 375 n n 
C1D N1N NDP sing 376 n n 
C1D H1D NDP sing 377 n n 
N1N C2N NDP sing 378 n n 
N1N C6N NDP sing 379 n n 
C2N C3N NDP doub 380 n n 
C2N H2N NDP sing 381 n n 
C3N C7N NDP sing 382 n n 
C3N C4N NDP sing 383 n n 
C7N O7N NDP doub 384 n n 
C7N N7N NDP sing 385 n n 
N7N H71N NDP sing 386 n n 
N7N H72N NDP sing 387 n n 
C4N C5N NDP sing 388 n n 
C4N H41N NDP sing 389 n n 
C4N H42N NDP sing 390 n n 
C5N C6N NDP doub 391 n n 
C5N H5N NDP sing 392 n n 
C6N H6N NDP sing 393 n n 
P2B O1X NDP doub 394 n n 
P2B O2X NDP sing 395 n n 
P2B O3X NDP sing 396 n n 
O2X HOP2 NDP sing 397 n n 
O3X HOP3 NDP sing 398 n n 
#
_atom_sites.entry_id                     7DI8 
_atom_sites.fract_transf_matrix[1][1]    0.01429 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005746 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005014 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 HEM A 1 601 527 HEM HEM . 
F 3 NDP A 1 602 528 NDP NDP . 
G 2 HEM B 1 601 527 HEM HEM . 
H 3 NDP B 1 602 528 NDP NDP . 
I 2 HEM C 1 601 527 HEM HEM . 
J 3 NDP C 1 602 528 NDP NDP . 
K 2 HEM D 1 601 527 HEM HEM . 
L 3 NDP D 1 602 528 NDP NDP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NDP . . . F 3 54.853 98.736 177.473 1 1.17 ? PA NDP 602 A 1 
HETATM 2 O O1A NDP . . . F 3 55.394 98.524 178.842 1 1.16 ? O1A NDP 602 A 1 
HETATM 3 O O2A NDP . . . F 3 53.418 99.124 177.256 1 1.19 ? O2A NDP 602 A 1 
HETATM 4 O O5B NDP . . . F 3 55.285 97.473 176.489 1 1.16 ? O5B NDP 602 A 1 
HETATM 5 C C5B NDP . . . F 3 56.169 96.681 177.257 1 1.14 ? C5B NDP 602 A 1 
HETATM 6 C C4B NDP . . . F 3 56.424 95.386 176.525 1 1.13 ? C4B NDP 602 A 1 
HETATM 7 O O4B NDP . . . F 3 57.723 94.954 176.774 1 1.12 ? O4B NDP 602 A 1 
HETATM 8 C C3B NDP . . . F 3 55.486 94.293 177.062 1 1.13 ? C3B NDP 602 A 1 
HETATM 9 O O3B NDP . . . F 3 54.327 94.226 176.301 1 1.15 ? O3B NDP 602 A 1 
HETATM 10 C C2B NDP . . . F 3 56.324 92.996 176.825 1 1.12 ? C2B NDP 602 A 1 
HETATM 11 O O2B NDP . . . F 3 55.871 92.235 175.834 1 1.12 ? O2B NDP 602 A 1 
HETATM 12 C C1B NDP . . . F 3 57.714 93.6 176.373 1 1.11 ? C1B NDP 602 A 1 
HETATM 13 N N9A NDP . . . F 3 58.888 92.941 176.985 1 1.1 ? N9A NDP 602 A 1 
HETATM 14 C C8A NDP . . . F 3 59.136 92.597 178.332 1 1.31 ? C8A NDP 602 A 1 
HETATM 15 N N7A NDP . . . F 3 60.34 92.004 178.516 1 1.29 ? N7A NDP 602 A 1 
HETATM 16 C C5A NDP . . . F 3 60.896 91.97 177.222 1 1.07 ? C5A NDP 602 A 1 
HETATM 17 C C6A NDP . . . F 3 62.126 91.49 176.726 1 1.06 ? C6A NDP 602 A 1 
HETATM 18 N N6A NDP . . . F 3 63.06 90.918 177.574 1 1.05 ? N6A NDP 602 A 1 
HETATM 19 N N1A NDP . . . F 3 62.435 91.575 175.388 1 1.06 ? N1A NDP 602 A 1 
HETATM 20 C C2A NDP . . . F 3 61.461 92.159 174.601 1 1.07 ? C2A NDP 602 A 1 
HETATM 21 N N3A NDP . . . F 3 60.262 92.66 174.918 1 1.09 ? N3A NDP 602 A 1 
HETATM 22 C C4A NDP . . . F 3 59.998 92.552 176.264 1 1.31 ? C4A NDP 602 A 1 
HETATM 23 O O3 NDP . . . F 3 55.695 100.067 177.051 1 1.17 ? O3 NDP 602 A 1 
HETATM 24 P PN NDP . . . F 3 55.295 100.491 175.575 1 1.18 ? PN NDP 602 A 1 
HETATM 25 O O1N NDP . . . F 3 55.363 101.965 175.52 1 1.19 ? O1N NDP 602 A 1 
HETATM 26 O O2N NDP . . . F 3 54.188 99.691 174.923 1 1.19 ? O2N NDP 602 A 1 
HETATM 27 O O5D NDP . . . F 3 56.662 100.048 174.545 1 1.17 ? O5D NDP 602 A 1 
HETATM 28 C C5D NDP . . . F 3 57.814 100.465 175.193 1 1.16 ? C5D NDP 602 A 1 
HETATM 29 C C4D NDP . . . F 3 58.942 99.568 174.762 1 1.14 ? C4D NDP 602 A 1 
HETATM 30 O O4D NDP . . . F 3 58.517 98.216 174.896 1 1.13 ? O4D NDP 602 A 1 
HETATM 31 C C3D NDP . . . F 3 59.168 99.786 173.253 1 1.14 ? C3D NDP 602 A 1 
HETATM 32 O O3D NDP . . . F 3 60.1 100.802 173.082 1 1.14 ? O3D NDP 602 A 1 
HETATM 33 C C2D NDP . . . F 3 59.736 98.451 172.819 1 1.36 ? C2D NDP 602 A 1 
HETATM 34 O O2D NDP . . . F 3 61.128 98.426 172.916 1 1.34 ? O2D NDP 602 A 1 
HETATM 35 C C1D NDP . . . F 3 59.133 97.447 173.885 1 1.35 ? C1D NDP 602 A 1 
HETATM 36 N N1N NDP . . . F 3 58.083 96.613 173.27 1 1.36 ? N1N NDP 602 A 1 
HETATM 37 C C2N NDP . . . F 3 56.956 97.214 172.762 1 1.15 ? C2N NDP 602 A 1 
HETATM 38 C C3N NDP . . . F 3 55.945 96.476 172.236 1 1.39 ? C3N NDP 602 A 1 
HETATM 39 C C7N NDP . . . F 3 54.807 97.218 171.719 1 1.17 ? C7N NDP 602 A 1 
HETATM 40 O O7N NDP . . . F 3 54.133 96.873 170.739 1 1.18 ? O7N NDP 602 A 1 
HETATM 41 N N7N NDP . . . F 3 54.466 98.389 172.376 1 1.18 ? N7N NDP 602 A 1 
HETATM 42 C C4N NDP . . . F 3 55.982 94.991 172.175 1 1.15 ? C4N NDP 602 A 1 
HETATM 43 C C5N NDP . . . F 3 57.257 94.435 172.697 1 1.13 ? C5N NDP 602 A 1 
HETATM 44 C C6N NDP . . . F 3 58.222 95.211 173.203 1 1.12 ? C6N NDP 602 A 1 
HETATM 45 P P2B NDP . . . F 3 54.525 91.12 176.345 1 1.13 ? P2B NDP 602 A 1 
HETATM 46 O O1X NDP . . . F 3 54.409 91.619 177.751 1 4.78 ? O1X NDP 602 A 1 
HETATM 47 O O2X NDP . . . F 3 55.103 89.716 176.137 1 6.05 ? O2X NDP 602 A 1 
HETATM 48 O O3X NDP . . . F 3 53.503 91.599 175.353 1 1.14 ? O3X NDP 602 A 1 
HETATM 49 H H51A NDP . . . F 3 56.992 97.151 177.465 1 0.46 ? H51A NDP 602 A 1 
HETATM 50 H H52A NDP . . . F 3 55.753 96.478 178.11 1 0.46 ? H52A NDP 602 A 1 
HETATM 51 H H4B NDP . . . F 3 56.329 95.519 175.569 1 0.45 ? H4B NDP 602 A 1 
HETATM 52 H H3B NDP . . . F 3 55.301 94.387 178.01 1 0.45 ? H3B NDP 602 A 1 
HETATM 53 H HO3A NDP . . . F 3 53.688 94.363 176.844 1 0.46 ? HO3A NDP 602 A 1 
HETATM 54 H H2B NDP . . . F 3 56.458 92.566 177.684 1 0.43 ? H2B NDP 602 A 1 
HETATM 55 H H1B NDP . . . F 3 57.824 93.531 175.411 1 0.42 ? H1B NDP 602 A 1 
HETATM 56 H H8A NDP . . . F 3 58.514 92.771 179.001 1 0.65 ? H8A NDP 602 A 1 
HETATM 57 H H61A NDP . . . F 3 63.897 91.054 177.434 1 0.35 ? H61A NDP 602 A 1 
HETATM 58 H H62A NDP . . . F 3 62.794 90.434 178.233 1 0.35 ? H62A NDP 602 A 1 
HETATM 59 H H2A NDP . . . F 3 61.693 92.208 173.701 1 0.38 ? H2A NDP 602 A 1 
HETATM 60 H H51N NDP . . . F 3 58.038 101.371 174.929 1 0.47 ? H51N NDP 602 A 1 
HETATM 61 H H52N NDP . . . F 3 57.716 100.5 176.157 1 0.47 ? H52N NDP 602 A 1 
HETATM 62 H H4D NDP . . . F 3 59.734 99.743 175.294 1 0.45 ? H4D NDP 602 A 1 
HETATM 63 H H3D NDP . . . F 3 58.327 99.964 172.804 1 0.46 ? H3D NDP 602 A 1 
HETATM 64 H HO3N NDP . . . F 3 59.896 101.18 172.348 1 0.45 ? HO3N NDP 602 A 1 
HETATM 65 H H2D NDP . . . F 3 59.442 98.221 171.924 1 0.71 ? H2D NDP 602 A 1 
HETATM 66 H HO2N NDP . . . F 3 61.326 97.63 173.138 1 0.69 ? HO2N NDP 602 A 1 
HETATM 67 H H1D NDP . . . F 3 59.805 96.871 174.283 1 0.71 ? H1D NDP 602 A 1 
HETATM 68 H H2N NDP . . . F 3 56.91 98.142 172.784 1 0.46 ? H2N NDP 602 A 1 
HETATM 69 H H71N NDP . . . F 3 54.924 98.643 173.058 1 0.5 ? H71N NDP 602 A 1 
HETATM 70 H H72N NDP . . . F 3 53.804 98.875 172.122 1 0.5 ? H72N NDP 602 A 1 
HETATM 71 H H41N NDP . . . F 3 55.244 94.613 172.679 1 0.46 ? H41N NDP 602 A 1 
HETATM 72 H H42N NDP . . . F 3 55.853 94.7 171.258 1 0.46 ? H42N NDP 602 A 1 
HETATM 73 H H5N NDP . . . F 3 57.384 93.514 172.668 1 0.44 ? H5N NDP 602 A 1 
HETATM 74 H H6N NDP . . . F 3 59.019 94.859 173.528 1 0.43 ? H6N NDP 602 A 1 
#
_model_server_stats.io_time_ms              43 
_model_server_stats.parse_time_ms           27 
_model_server_stats.create_model_time_ms    181 
_model_server_stats.query_time_ms           534 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           74 
#