data_7DI8
#
_model_server_result.job_id            xTShQ8yBzQfyZWY-fi1J4w 
_model_server_result.datetime_utc      '2024-11-15 16:45:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7di8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":602}' 
#
_entry.id    7DI8 
#
_exptl.entry_id    7DI8 
_exptl.method      'ELECTRON CRYSTALLOGRAPHY' 
#
_entity.details                     ? 
_entity.formula_weight              745.421 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7DI8 
_cell.length_a            69.98 
_cell.length_b            174.02 
_cell.length_c            199.45 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7DI8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 H N N 
? 3 J N N 
? 3 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OH TYR 358 A TYR 357 1_555 E FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? 
metalc ? metalc2 B OH TYR 358 B TYR 357 1_555 G FE HEM . B HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? 
metalc ? metalc3 C OH TYR 358 C TYR 357 1_555 I FE HEM . C HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.451 ? 
metalc ? metalc4 D OH TYR 358 D TYR 357 1_555 K FE HEM . D HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? 
#
_chem_comp.formula           'C21 H30 N7 O17 P3' 
_chem_comp.formula_weight    745.421 
_chem_comp.id                NDP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NDP doub 317 n n 
PA O2A NDP sing 318 n n 
PA O5B NDP sing 319 n n 
PA O3 NDP sing 320 n n 
O2A HOA2 NDP sing 321 n n 
O5B C5B NDP sing 322 n n 
C5B C4B NDP sing 323 n n 
C5B H51A NDP sing 324 n n 
C5B H52A NDP sing 325 n n 
C4B O4B NDP sing 326 n n 
C4B C3B NDP sing 327 n n 
C4B H4B NDP sing 328 n n 
O4B C1B NDP sing 329 n n 
C3B O3B NDP sing 330 n n 
C3B C2B NDP sing 331 n n 
C3B H3B NDP sing 332 n n 
O3B HO3A NDP sing 333 n n 
C2B O2B NDP sing 334 n n 
C2B C1B NDP sing 335 n n 
C2B H2B NDP sing 336 n n 
O2B P2B NDP sing 337 n n 
C1B N9A NDP sing 338 n n 
C1B H1B NDP sing 339 n n 
N9A C8A NDP sing 340 n y 
N9A C4A NDP sing 341 n y 
C8A N7A NDP doub 342 n y 
C8A H8A NDP sing 343 n n 
N7A C5A NDP sing 344 n y 
C5A C6A NDP sing 345 n y 
C5A C4A NDP doub 346 n y 
C6A N6A NDP sing 347 n n 
C6A N1A NDP doub 348 n y 
N6A H61A NDP sing 349 n n 
N6A H62A NDP sing 350 n n 
N1A C2A NDP sing 351 n y 
C2A N3A NDP doub 352 n y 
C2A H2A NDP sing 353 n n 
N3A C4A NDP sing 354 n y 
O3 PN NDP sing 355 n n 
PN O1N NDP doub 356 n n 
PN O2N NDP sing 357 n n 
PN O5D NDP sing 358 n n 
O2N H21N NDP sing 359 n n 
O5D C5D NDP sing 360 n n 
C5D C4D NDP sing 361 n n 
C5D H51N NDP sing 362 n n 
C5D H52N NDP sing 363 n n 
C4D O4D NDP sing 364 n n 
C4D C3D NDP sing 365 n n 
C4D H4D NDP sing 366 n n 
O4D C1D NDP sing 367 n n 
C3D O3D NDP sing 368 n n 
C3D C2D NDP sing 369 n n 
C3D H3D NDP sing 370 n n 
O3D HO3N NDP sing 371 n n 
C2D O2D NDP sing 372 n n 
C2D C1D NDP sing 373 n n 
C2D H2D NDP sing 374 n n 
O2D HO2N NDP sing 375 n n 
C1D N1N NDP sing 376 n n 
C1D H1D NDP sing 377 n n 
N1N C2N NDP sing 378 n n 
N1N C6N NDP sing 379 n n 
C2N C3N NDP doub 380 n n 
C2N H2N NDP sing 381 n n 
C3N C7N NDP sing 382 n n 
C3N C4N NDP sing 383 n n 
C7N O7N NDP doub 384 n n 
C7N N7N NDP sing 385 n n 
N7N H71N NDP sing 386 n n 
N7N H72N NDP sing 387 n n 
C4N C5N NDP sing 388 n n 
C4N H41N NDP sing 389 n n 
C4N H42N NDP sing 390 n n 
C5N C6N NDP doub 391 n n 
C5N H5N NDP sing 392 n n 
C6N H6N NDP sing 393 n n 
P2B O1X NDP doub 394 n n 
P2B O2X NDP sing 395 n n 
P2B O3X NDP sing 396 n n 
O2X HOP2 NDP sing 397 n n 
O3X HOP3 NDP sing 398 n n 
#
_atom_sites.entry_id                     7DI8 
_atom_sites.fract_transf_matrix[1][1]    0.01429 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005746 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005014 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 HEM A 1 601 527 HEM HEM . 
F 3 NDP A 1 602 528 NDP NDP . 
G 2 HEM B 1 601 527 HEM HEM . 
H 3 NDP B 1 602 528 NDP NDP . 
I 2 HEM C 1 601 527 HEM HEM . 
J 3 NDP C 1 602 528 NDP NDP . 
K 2 HEM D 1 601 527 HEM HEM . 
L 3 NDP D 1 602 528 NDP NDP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NDP . . . L 3 98.107 43.683 165.31 1 1.22 ? PA NDP 602 D 1 
HETATM 2 O O1A NDP . . . L 3 98.476 43.908 166.736 1 1.47 ? O1A NDP 602 D 1 
HETATM 3 O O2A NDP . . . L 3 99.088 43.074 164.351 1 1.49 ? O2A NDP 602 D 1 
HETATM 4 O O5B NDP . . . L 3 97.495 45.078 164.659 1 1.44 ? O5B NDP 602 D 1 
HETATM 5 C C5B NDP . . . L 3 96.845 45.725 165.717 1 1.19 ? C5B NDP 602 D 1 
HETATM 6 C C4B NDP . . . L 3 96.03 46.875 165.145 1 1.18 ? C4B NDP 602 D 1 
HETATM 7 O O4B NDP . . . L 3 95.012 47.275 166.054 1 1.17 ? O4B NDP 602 D 1 
HETATM 8 C C3B NDP . . . L 3 96.98 48.049 164.919 1 1.17 ? C3B NDP 602 D 1 
HETATM 9 O O3B NDP . . . L 3 97.129 48.245 163.556 1 1.54 ? O3B NDP 602 D 1 
HETATM 10 C C2B NDP . . . L 3 96.207 49.253 165.547 1 1.16 ? C2B NDP 602 D 1 
HETATM 11 O O2B NDP . . . L 3 96.13 50.322 164.758 1 1.15 ? O2B NDP 602 D 1 
HETATM 12 C C1B NDP . . . L 3 94.777 48.63 165.741 1 1.38 ? C1B NDP 602 D 1 
HETATM 13 N N9A NDP . . . L 3 94.059 49.275 166.856 1 1.14 ? N9A NDP 602 D 1 
HETATM 14 C C8A NDP . . . L 3 94.522 49.499 168.161 1 1.14 ? C8A NDP 602 D 1 
HETATM 15 N N7A NDP . . . L 3 93.626 50.129 168.949 1 1.13 ? N7A NDP 602 D 1 
HETATM 16 C C5A NDP . . . L 3 92.517 50.335 168.106 1 1.12 ? C5A NDP 602 D 1 
HETATM 17 C C6A NDP . . . L 3 91.265 50.937 168.329 1 1.33 ? C6A NDP 602 D 1 
HETATM 18 N N6A NDP . . . L 3 90.951 51.47 169.57 1 1.11 ? N6A NDP 602 D 1 
HETATM 19 N N1A NDP . . . L 3 90.328 51.019 167.329 1 1.33 ? N1A NDP 602 D 1 
HETATM 20 C C2A NDP . . . L 3 90.715 50.471 166.123 1 1.11 ? C2A NDP 602 D 1 
HETATM 21 N N3A NDP . . . L 3 91.859 49.869 165.756 1 1.12 ? N3A NDP 602 D 1 
HETATM 22 C C4A NDP . . . L 3 92.77 49.81 166.79 1 1.36 ? C4A NDP 602 D 1 
HETATM 23 O O3 NDP . . . L 3 96.885 42.585 165.489 1 1.47 ? O3 NDP 602 D 1 
HETATM 24 P PN NDP . . . L 3 96.496 41.978 164.065 1 1.23 ? PN NDP 602 D 1 
HETATM 25 O O1N NDP . . . L 3 96.536 40.505 164.173 1 1.24 ? O1N NDP 602 D 1 
HETATM 26 O O2N NDP . . . L 3 97.026 42.742 162.872 1 1.22 ? O2N NDP 602 D 1 
HETATM 27 O O5D NDP . . . L 3 94.784 42.23 163.814 1 1.21 ? O5D NDP 602 D 1 
HETATM 28 C C5D NDP . . . L 3 94.172 41.745 164.917 1 1.21 ? C5D NDP 602 D 1 
HETATM 29 C C4D NDP . . . L 3 92.985 42.622 165.197 1 1.19 ? C4D NDP 602 D 1 
HETATM 30 O O4D NDP . . . L 3 93.397 43.999 165.174 1 1.18 ? O4D NDP 602 D 1 
HETATM 31 C C3D NDP . . . L 3 91.99 42.462 164.038 1 1.19 ? C3D NDP 602 D 1 
HETATM 32 O O3D NDP . . . L 3 91.121 41.411 164.352 1 1.19 ? O3D NDP 602 D 1 
HETATM 33 C C2D NDP . . . L 3 91.269 43.821 164.047 1 1.17 ? C2D NDP 602 D 1 
HETATM 34 O O2D NDP . . . L 3 90.198 43.853 164.92 1 1.17 ? O2D NDP 602 D 1 
HETATM 35 C C1D NDP . . . L 3 92.36 44.797 164.61 1 1.17 ? C1D NDP 602 D 1 
HETATM 36 N N1N NDP . . . L 3 92.935 45.603 163.525 1 1.17 ? N1N NDP 602 D 1 
HETATM 37 C C2N NDP . . . L 3 93.515 44.992 162.435 1 1.17 ? C2N NDP 602 D 1 
HETATM 38 C C3N NDP . . . L 3 93.968 45.744 161.39 1 1.17 ? C3N NDP 602 D 1 
HETATM 39 C C7N NDP . . . L 3 94.578 45.041 160.269 1 1.18 ? C7N NDP 602 D 1 
HETATM 40 O O7N NDP . . . L 3 94.268 45.211 159.082 1 1.18 ? O7N NDP 602 D 1 
HETATM 41 N N7N NDP . . . L 3 95.59 44.141 160.566 1 1.2 ? N7N NDP 602 D 1 
HETATM 42 C C4N NDP . . . L 3 93.862 47.235 161.366 1 1.16 ? C4N NDP 602 D 1 
HETATM 43 C C5N NDP . . . L 3 93.345 47.791 162.63 1 1.15 ? C5N NDP 602 D 1 
HETATM 44 C C6N NDP . . . L 3 92.916 47.011 163.621 1 1.15 ? C6N NDP 602 D 1 
HETATM 45 P P2B NDP . . . L 3 97.6 51.412 164.918 1 7.58 ? P2B NDP 602 D 1 
HETATM 46 O O1X NDP . . . L 3 98.113 50.847 166.206 1 9.76 ? O1X NDP 602 D 1 
HETATM 47 O O2X NDP . . . L 3 97.009 52.824 164.957 1 9.15 ? O2X NDP 602 D 1 
HETATM 48 O O3X NDP . . . L 3 98.296 50.993 163.654 1 9.05 ? O3X NDP 602 D 1 
HETATM 49 H H51A NDP . . . L 3 96.302 45.114 166.239 1 0.52 ? H51A NDP 602 D 1 
HETATM 50 H H52A NDP . . . L 3 97.509 46.085 166.326 1 0.52 ? H52A NDP 602 D 1 
HETATM 51 H H4B NDP . . . L 3 95.597 46.591 164.325 1 0.5 ? H4B NDP 602 D 1 
HETATM 52 H H3B NDP . . . L 3 97.83 47.94 165.374 1 0.49 ? H3B NDP 602 D 1 
HETATM 53 H HO3A NDP . . . L 3 97.9 47.942 163.364 1 1.67 ? HO3A NDP 602 D 1 
HETATM 54 H H2B NDP . . . L 3 96.572 49.402 166.434 1 0.47 ? H2B NDP 602 D 1 
HETATM 55 H H1B NDP . . . L 3 94.229 48.717 164.945 1 0.74 ? H1B NDP 602 D 1 
HETATM 56 H H8A NDP . . . L 3 95.369 49.223 168.427 1 0.46 ? H8A NDP 602 D 1 
HETATM 57 H H61A NDP . . . L 3 91.082 50.999 170.278 1 0.41 ? H61A NDP 602 D 1 
HETATM 58 H H62A NDP . . . L 3 90.63 52.266 169.621 1 0.41 ? H62A NDP 602 D 1 
HETATM 59 H H2A NDP . . . L 3 90.065 50.538 165.46 1 0.42 ? H2A NDP 602 D 1 
HETATM 60 H H51N NDP . . . L 3 94.767 41.795 165.682 1 0.54 ? H51N NDP 602 D 1 
HETATM 61 H H52N NDP . . . L 3 93.934 40.808 164.841 1 0.54 ? H52N NDP 602 D 1 
HETATM 62 H H4D NDP . . . L 3 92.6 42.39 166.056 1 0.52 ? H4D NDP 602 D 1 
HETATM 63 H H3D NDP . . . L 3 92.459 42.328 163.2 1 0.51 ? H3D NDP 602 D 1 
HETATM 64 H HO3N NDP . . . L 3 90.936 41.037 163.612 1 0.52 ? HO3N NDP 602 D 1 
HETATM 65 H H2D NDP . . . L 3 91.001 44.081 163.152 1 0.49 ? H2D NDP 602 D 1 
HETATM 66 H HO2N NDP . . . L 3 89.689 44.47 164.634 1 0.48 ? HO2N NDP 602 D 1 
HETATM 67 H H1D NDP . . . L 3 92.011 45.391 165.292 1 0.49 ? H1D NDP 602 D 1 
HETATM 68 H H2N NDP . . . L 3 93.591 44.065 162.437 1 0.5 ? H2N NDP 602 D 1 
HETATM 69 H H71N NDP . . . L 3 95.82 44.013 161.384 1 0.52 ? H71N NDP 602 D 1 
HETATM 70 H H72N NDP . . . L 3 95.994 43.694 159.951 1 0.52 ? H72N NDP 602 D 1 
HETATM 71 H H41N NDP . . . L 3 93.285 47.52 160.64 1 0.47 ? H41N NDP 602 D 1 
HETATM 72 H H42N NDP . . . L 3 94.733 47.618 161.177 1 0.47 ? H42N NDP 602 D 1 
HETATM 73 H H5N NDP . . . L 3 93.317 48.715 162.732 1 0.46 ? H5N NDP 602 D 1 
HETATM 74 H H6N NDP . . . L 3 92.59 47.363 164.418 1 0.47 ? H6N NDP 602 D 1 
#
_model_server_stats.io_time_ms              51 
_model_server_stats.parse_time_ms           19 
_model_server_stats.create_model_time_ms    53 
_model_server_stats.query_time_ms           269 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           74 
#