data_7DIH
#
_model_server_result.job_id            Yfcn42kcjXjPRTqIMYraDQ 
_model_server_result.datetime_utc      '2024-11-09 23:16:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7dih 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":201}' 
#
_entry.id    7DIH 
#
_exptl.entry_id    7DIH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          95.2 
_cell.angle_gamma         90 
_cell.entry_id            7DIH 
_cell.length_a            59.771 
_cell.length_b            35.823 
_cell.length_c            138.084 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7DIH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,H 1 1 
B,F,G,I 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 85 A HIS 82 1_555 C FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? 
metalc ? metalc2 C FE HEM . A HEM 201 1_555 D N3 IMD . A IMD 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? 
metalc ? metalc3 B NE2 HIS 85 B HIS 82 1_555 F FE HEM . B HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? 
metalc ? metalc4 F FE HEM . B HEM 201 1_555 G N3 IMD . B IMD 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 129 n n 
CHA C4D HEM doub 130 n n 
CHA HHA HEM sing 131 n n 
CHB C4A HEM sing 132 n n 
CHB C1B HEM doub 133 n n 
CHB HHB HEM sing 134 n n 
CHC C4B HEM sing 135 n n 
CHC C1C HEM doub 136 n n 
CHC HHC HEM sing 137 n n 
CHD C4C HEM doub 138 n n 
CHD C1D HEM sing 139 n n 
CHD HHD HEM sing 140 n n 
C1A C2A HEM doub 141 n y 
C1A NA HEM sing 142 n y 
C2A C3A HEM sing 143 n y 
C2A CAA HEM sing 144 n n 
C3A C4A HEM doub 145 n y 
C3A CMA HEM sing 146 n n 
C4A NA HEM sing 147 n y 
CMA HMA HEM sing 148 n n 
CMA HMAA HEM sing 149 n n 
CMA HMAB HEM sing 150 n n 
CAA CBA HEM sing 151 n n 
CAA HAA HEM sing 152 n n 
CAA HAAA HEM sing 153 n n 
CBA CGA HEM sing 154 n n 
CBA HBA HEM sing 155 n n 
CBA HBAA HEM sing 156 n n 
CGA O1A HEM doub 157 n n 
CGA O2A HEM sing 158 n n 
C1B C2B HEM sing 159 n n 
C1B NB HEM sing 160 n n 
C2B C3B HEM doub 161 n n 
C2B CMB HEM sing 162 n n 
C3B C4B HEM sing 163 n n 
C3B CAB HEM sing 164 n n 
C4B NB HEM doub 165 n n 
CMB HMB HEM sing 166 n n 
CMB HMBA HEM sing 167 n n 
CMB HMBB HEM sing 168 n n 
CAB CBB HEM doub 169 n n 
CAB HAB HEM sing 170 n n 
CBB HBB HEM sing 171 n n 
CBB HBBA HEM sing 172 n n 
C1C C2C HEM sing 173 n y 
C1C NC HEM sing 174 n y 
C2C C3C HEM doub 175 n y 
C2C CMC HEM sing 176 n n 
C3C C4C HEM sing 177 n y 
C3C CAC HEM sing 178 n n 
C4C NC HEM sing 179 n y 
CMC HMC HEM sing 180 n n 
CMC HMCA HEM sing 181 n n 
CMC HMCB HEM sing 182 n n 
CAC CBC HEM doub 183 n n 
CAC HAC HEM sing 184 n n 
CBC HBC HEM sing 185 n n 
CBC HBCA HEM sing 186 n n 
C1D C2D HEM sing 187 n n 
C1D ND HEM doub 188 n n 
C2D C3D HEM doub 189 n n 
C2D CMD HEM sing 190 n n 
C3D C4D HEM sing 191 n n 
C3D CAD HEM sing 192 n n 
C4D ND HEM sing 193 n n 
CMD HMD HEM sing 194 n n 
CMD HMDA HEM sing 195 n n 
CMD HMDB HEM sing 196 n n 
CAD CBD HEM sing 197 n n 
CAD HAD HEM sing 198 n n 
CAD HADA HEM sing 199 n n 
CBD CGD HEM sing 200 n n 
CBD HBD HEM sing 201 n n 
CBD HBDA HEM sing 202 n n 
CGD O1D HEM doub 203 n n 
CGD O2D HEM sing 204 n n 
O2A H2A HEM sing 205 n n 
O2D H2D HEM sing 206 n n 
FE NA HEM sing 207 n n 
FE NB HEM sing 208 n n 
FE NC HEM sing 209 n n 
FE ND HEM sing 210 n n 
#
_atom_sites.entry_id                     7DIH 
_atom_sites.fract_transf_matrix[1][1]    0.016731 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001522 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.027915 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007272 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HEM A 1 201 201 HEM HEM . 
D 3 IMD A 1 202 202 IMD IMD . 
E 4 SO4 A 1 203 1 SO4 SO4 . 
F 2 HEM B 1 201 201 HEM HEM . 
G 3 IMD B 1 202 202 IMD IMD . 
H 5 HOH A 1 301 53 HOH HOH . 
H 5 HOH A 2 302 40 HOH HOH . 
H 5 HOH A 3 303 57 HOH HOH . 
H 5 HOH A 4 304 16 HOH HOH . 
H 5 HOH A 5 305 5 HOH HOH . 
H 5 HOH A 6 306 43 HOH HOH . 
H 5 HOH A 7 307 4 HOH HOH . 
H 5 HOH A 8 308 22 HOH HOH . 
H 5 HOH A 9 309 67 HOH HOH . 
H 5 HOH A 10 310 54 HOH HOH . 
H 5 HOH A 11 311 23 HOH HOH . 
H 5 HOH A 12 312 9 HOH HOH . 
H 5 HOH A 13 313 12 HOH HOH . 
H 5 HOH A 14 314 70 HOH HOH . 
H 5 HOH A 15 315 13 HOH HOH . 
H 5 HOH A 16 316 20 HOH HOH . 
H 5 HOH A 17 317 2 HOH HOH . 
H 5 HOH A 18 318 18 HOH HOH . 
H 5 HOH A 19 319 74 HOH HOH . 
H 5 HOH A 20 320 66 HOH HOH . 
H 5 HOH A 21 321 63 HOH HOH . 
H 5 HOH A 22 322 19 HOH HOH . 
H 5 HOH A 23 323 6 HOH HOH . 
H 5 HOH A 24 324 27 HOH HOH . 
H 5 HOH A 25 325 49 HOH HOH . 
H 5 HOH A 26 326 15 HOH HOH . 
H 5 HOH A 27 327 50 HOH HOH . 
H 5 HOH A 28 328 52 HOH HOH . 
H 5 HOH A 29 329 29 HOH HOH . 
H 5 HOH A 30 330 62 HOH HOH . 
H 5 HOH A 31 331 48 HOH HOH . 
H 5 HOH A 32 332 36 HOH HOH . 
H 5 HOH A 33 333 60 HOH HOH . 
H 5 HOH A 34 334 24 HOH HOH . 
H 5 HOH A 35 335 26 HOH HOH . 
H 5 HOH A 36 336 34 HOH HOH . 
H 5 HOH A 37 337 42 HOH HOH . 
H 5 HOH A 38 338 65 HOH HOH . 
H 5 HOH A 39 339 11 HOH HOH . 
H 5 HOH A 40 340 25 HOH HOH . 
H 5 HOH A 41 341 41 HOH HOH . 
H 5 HOH A 42 342 55 HOH HOH . 
H 5 HOH A 43 343 58 HOH HOH . 
I 5 HOH B 1 301 59 HOH HOH . 
I 5 HOH B 2 302 46 HOH HOH . 
I 5 HOH B 3 303 45 HOH HOH . 
I 5 HOH B 4 304 68 HOH HOH . 
I 5 HOH B 5 305 72 HOH HOH . 
I 5 HOH B 6 306 73 HOH HOH . 
I 5 HOH B 7 307 64 HOH HOH . 
I 5 HOH B 8 308 1 HOH HOH . 
I 5 HOH B 9 309 51 HOH HOH . 
I 5 HOH B 10 310 75 HOH HOH . 
I 5 HOH B 11 311 30 HOH HOH . 
I 5 HOH B 12 312 7 HOH HOH . 
I 5 HOH B 13 313 32 HOH HOH . 
I 5 HOH B 14 314 3 HOH HOH . 
I 5 HOH B 15 315 10 HOH HOH . 
I 5 HOH B 16 316 21 HOH HOH . 
I 5 HOH B 17 317 14 HOH HOH . 
I 5 HOH B 18 318 35 HOH HOH . 
I 5 HOH B 19 319 76 HOH HOH . 
I 5 HOH B 20 320 71 HOH HOH . 
I 5 HOH B 21 321 38 HOH HOH . 
I 5 HOH B 22 322 28 HOH HOH . 
I 5 HOH B 23 323 61 HOH HOH . 
I 5 HOH B 24 324 31 HOH HOH . 
I 5 HOH B 25 325 33 HOH HOH . 
I 5 HOH B 26 326 56 HOH HOH . 
I 5 HOH B 27 327 69 HOH HOH . 
I 5 HOH B 28 328 17 HOH HOH . 
I 5 HOH B 29 329 37 HOH HOH . 
I 5 HOH B 30 330 8 HOH HOH . 
I 5 HOH B 31 331 39 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . F 2 11.135 -21.398 -8.316 1 25.8 ? CHA HEM 201 B 1 
HETATM 2 C CHB HEM . . . F 2 11.148 -20.294 -13.018 1 23.38 ? CHB HEM 201 B 1 
HETATM 3 C CHC HEM . . . F 2 15.84 -19.195 -12.648 1 21.86 ? CHC HEM 201 B 1 
HETATM 4 C CHD HEM . . . F 2 15.958 -21.834 -8.551 1 21.48 ? CHD HEM 201 B 1 
HETATM 5 C C1A HEM . . . F 2 10.705 -21.173 -9.601 1 25.11 ? C1A HEM 201 B 1 
HETATM 6 C C2A HEM . . . F 2 9.362 -21.332 -10.117 1 27.27 ? C2A HEM 201 B 1 
HETATM 7 C C3A HEM . . . F 2 9.367 -21.025 -11.407 1 28.7 ? C3A HEM 201 B 1 
HETATM 8 C C4A HEM . . . F 2 10.723 -20.682 -11.777 1 23.94 ? C4A HEM 201 B 1 
HETATM 9 C CMA HEM . . . F 2 8.14 -21.063 -12.339 1 28.43 ? CMA HEM 201 B 1 
HETATM 10 C CAA HEM . . . F 2 8.118 -21.75 -9.305 1 30.31 ? CAA HEM 201 B 1 
HETATM 11 C CBA HEM . . . F 2 7.629 -20.511 -8.559 1 39.07 ? CBA HEM 201 B 1 
HETATM 12 C CGA HEM . . . F 2 6.346 -20.782 -7.81 1 51.7 ? CGA HEM 201 B 1 
HETATM 13 O O1A HEM . . . F 2 5.434 -21.434 -8.382 1 51.08 ? O1A HEM 201 B 1 
HETATM 14 O O2A HEM . . . F 2 6.232 -20.329 -6.639 1 47.17 ? O2A HEM 201 B 1 
HETATM 15 C C1B HEM . . . F 2 12.406 -19.827 -13.313 1 22.43 ? C1B HEM 201 B 1 
HETATM 16 C C2B HEM . . . F 2 12.787 -19.171 -14.543 1 21.45 ? C2B HEM 201 B 1 
HETATM 17 C C3B HEM . . . F 2 14.098 -18.876 -14.462 1 21.77 ? C3B HEM 201 B 1 
HETATM 18 C C4B HEM . . . F 2 14.564 -19.318 -13.155 1 21.92 ? C4B HEM 201 B 1 
HETATM 19 C CMB HEM . . . F 2 11.814 -18.929 -15.725 1 23.56 ? CMB HEM 201 B 1 
HETATM 20 C CAB HEM . . . F 2 15.026 -18.163 -15.479 1 23.93 ? CAB HEM 201 B 1 
HETATM 21 C CBB HEM . . . F 2 14.589 -17.288 -16.396 1 23.74 ? CBB HEM 201 B 1 
HETATM 22 C C1C HEM . . . F 2 16.283 -19.89 -11.54 1 21.37 ? C1C HEM 201 B 1 
HETATM 23 C C2C HEM . . . F 2 17.652 -20.123 -11.171 1 23.03 ? C2C HEM 201 B 1 
HETATM 24 C C3C HEM . . . F 2 17.688 -20.834 -10.038 1 21.8 ? C3C HEM 201 B 1 
HETATM 25 C C4C HEM . . . F 2 16.327 -21.112 -9.672 1 21.74 ? C4C HEM 201 B 1 
HETATM 26 C CMC HEM . . . F 2 18.834 -19.546 -11.952 1 21.94 ? CMC HEM 201 B 1 
HETATM 27 C CAC HEM . . . F 2 18.882 -21.379 -9.216 1 27.56 ? CAC HEM 201 B 1 
HETATM 28 C CBC HEM . . . F 2 19.989 -21.888 -9.779 1 23.85 ? CBC HEM 201 B 1 
HETATM 29 C C1D HEM . . . F 2 14.677 -21.86 -8.075 1 22.17 ? C1D HEM 201 B 1 
HETATM 30 C C2D HEM . . . F 2 14.254 -22.305 -6.775 1 23.48 ? C2D HEM 201 B 1 
HETATM 31 C C3D HEM . . . F 2 12.913 -22.19 -6.704 1 26.31 ? C3D HEM 201 B 1 
HETATM 32 C C4D HEM . . . F 2 12.448 -21.663 -7.972 1 24.55 ? C4D HEM 201 B 1 
HETATM 33 C CMD HEM . . . F 2 15.229 -22.827 -5.689 1 23.92 ? CMD HEM 201 B 1 
HETATM 34 C CAD HEM . . . F 2 12.002 -22.552 -5.5 1 27.37 ? CAD HEM 201 B 1 
HETATM 35 C CBD HEM . . . F 2 11.44 -23.948 -5.767 1 29.45 ? CBD HEM 201 B 1 
HETATM 36 C CGD HEM . . . F 2 10.382 -24.325 -4.761 1 43.94 ? CGD HEM 201 B 1 
HETATM 37 O O1D HEM . . . F 2 9.704 -25.364 -4.986 1 42.09 ? O1D HEM 201 B 1 
HETATM 38 O O2D HEM . . . F 2 10.221 -23.59 -3.752 1 40.96 ? O2D HEM 201 B 1 
HETATM 39 N NA HEM . . . F 2 11.52 -20.781 -10.642 1 21.59 ? NA HEM 201 B 1 
HETATM 40 N NB HEM . . . F 2 13.5 -19.878 -12.478 1 21.89 ? NB HEM 201 B 1 
HETATM 41 N NC HEM . . . F 2 15.479 -20.526 -10.615 1 20.52 ? NC HEM 201 B 1 
HETATM 42 N ND HEM . . . F 2 13.553 -21.487 -8.783 1 21.37 ? ND HEM 201 B 1 
HETATM 43 FE FE HEM . . . F 2 13.51 -20.633 -10.608 1 23.16 ? FE HEM 201 B 1 
#
_model_server_stats.io_time_ms              75 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           299 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           43 
#