data_7DII # _model_server_result.job_id s1U4rT1ZY91i5KsGv1wLyg _model_server_result.datetime_utc '2024-10-16 12:22:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7dii # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":602}' # _entry.id 7DII # _exptl.entry_id 7DII _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 100.89 _cell.angle_beta 97.58 _cell.angle_gamma 115.16 _cell.entry_id 7DII _cell.length_a 64.588 _cell.length_b 72.184 _cell.length_c 80.806 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7DII _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 G N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLY 20 A GLY 20 1_555 E NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc2 A O ALA 22 A ALA 22 1_555 D NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc3 A O VAL 23 A VAL 23 1_555 E NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc4 A OD1 ASN 27 A ASN 27 1_555 D NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc5 A O THR 254 A THR 254 1_555 D NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc6 A OG1 THR 254 A THR 254 1_555 D NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? metalc ? metalc7 A OD1 ASN 286 A ASN 286 1_555 D NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.529 ? metalc ? metalc8 A O ALA 351 A ALA 351 1_555 E NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc9 A OG1 THR 354 A THR 354 1_555 E NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? metalc ? metalc10 A OG SER 355 A SER 355 1_555 E NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc11 C OXT LEU . A LEU 601 1_555 D NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.544 ? metalc ? metalc12 B O GLY 20 B GLY 20 1_555 H NA NA . B NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc13 B O ALA 22 B ALA 22 1_555 G NA NA . B NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc14 B O VAL 23 B VAL 23 1_555 H NA NA . B NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc15 B OD1 ASN 27 B ASN 27 1_555 G NA NA . B NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc16 B O THR 254 B THR 254 1_555 G NA NA . B NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? metalc ? metalc17 B OG1 THR 254 B THR 254 1_555 G NA NA . B NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc18 B OD1 ASN 286 B ASN 286 1_555 G NA NA . B NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? metalc ? metalc19 B O ALA 351 B ALA 351 1_555 H NA NA . B NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc20 B OG1 THR 354 B THR 354 1_555 H NA NA . B NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc21 B OG SER 355 B SER 355 1_555 H NA NA . B NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc22 F O LEU . B LEU 601 1_555 G NA NA . B NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.681 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7DII _atom_sites.fract_transf_matrix[1][1] 0.015483 _atom_sites.fract_transf_matrix[1][2] 0.007272 _atom_sites.fract_transf_matrix[1][3] 0.004206 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015306 _atom_sites.fract_transf_matrix[2][3] 0.004345 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012978 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 LEU A 1 601 601 LEU LEU . D 3 NA A 1 602 701 NA NA . E 3 NA A 1 603 702 NA NA . F 2 LEU B 1 601 601 LEU LEU . G 3 NA B 1 602 701 NA NA . H 3 NA B 1 603 702 NA NA . I 4 HOH A 1 701 28 HOH HOH . I 4 HOH A 2 702 30 HOH HOH . I 4 HOH A 3 703 31 HOH HOH . I 4 HOH A 4 704 13 HOH HOH . I 4 HOH A 5 705 43 HOH HOH . I 4 HOH A 6 706 37 HOH HOH . I 4 HOH A 7 707 26 HOH HOH . I 4 HOH A 8 708 20 HOH HOH . I 4 HOH A 9 709 19 HOH HOH . I 4 HOH A 10 710 85 HOH HOH . I 4 HOH A 11 711 36 HOH HOH . I 4 HOH A 12 712 50 HOH HOH . I 4 HOH A 13 713 75 HOH HOH . I 4 HOH A 14 714 27 HOH HOH . I 4 HOH A 15 715 58 HOH HOH . I 4 HOH A 16 716 7 HOH HOH . I 4 HOH A 17 717 32 HOH HOH . I 4 HOH A 18 718 9 HOH HOH . I 4 HOH A 19 719 17 HOH HOH . I 4 HOH A 20 720 4 HOH HOH . I 4 HOH A 21 721 1 HOH HOH . I 4 HOH A 22 722 87 HOH HOH . I 4 HOH A 23 723 24 HOH HOH . I 4 HOH A 24 724 21 HOH HOH . I 4 HOH A 25 725 15 HOH HOH . I 4 HOH A 26 726 10 HOH HOH . I 4 HOH A 27 727 42 HOH HOH . I 4 HOH A 28 728 77 HOH HOH . I 4 HOH A 29 729 16 HOH HOH . I 4 HOH A 30 730 66 HOH HOH . I 4 HOH A 31 731 94 HOH HOH . I 4 HOH A 32 732 82 HOH HOH . I 4 HOH A 33 733 49 HOH HOH . I 4 HOH A 34 734 83 HOH HOH . I 4 HOH A 35 735 60 HOH HOH . I 4 HOH A 36 736 55 HOH HOH . I 4 HOH A 37 737 54 HOH HOH . I 4 HOH A 38 738 48 HOH HOH . I 4 HOH A 39 739 95 HOH HOH . J 4 HOH B 1 701 80 HOH HOH . J 4 HOH B 2 702 34 HOH HOH . J 4 HOH B 3 703 14 HOH HOH . J 4 HOH B 4 704 35 HOH HOH . J 4 HOH B 5 705 22 HOH HOH . J 4 HOH B 6 706 88 HOH HOH . J 4 HOH B 7 707 29 HOH HOH . J 4 HOH B 8 708 63 HOH HOH . J 4 HOH B 9 709 18 HOH HOH . J 4 HOH B 10 710 56 HOH HOH . J 4 HOH B 11 711 52 HOH HOH . J 4 HOH B 12 712 41 HOH HOH . J 4 HOH B 13 713 12 HOH HOH . J 4 HOH B 14 714 44 HOH HOH . J 4 HOH B 15 715 47 HOH HOH . J 4 HOH B 16 716 2 HOH HOH . J 4 HOH B 17 717 5 HOH HOH . J 4 HOH B 18 718 64 HOH HOH . J 4 HOH B 19 719 39 HOH HOH . J 4 HOH B 20 720 25 HOH HOH . J 4 HOH B 21 721 3 HOH HOH . J 4 HOH B 22 722 6 HOH HOH . J 4 HOH B 23 723 33 HOH HOH . J 4 HOH B 24 724 89 HOH HOH . J 4 HOH B 25 725 65 HOH HOH . J 4 HOH B 26 726 40 HOH HOH . J 4 HOH B 27 727 81 HOH HOH . J 4 HOH B 28 728 11 HOH HOH . J 4 HOH B 29 729 51 HOH HOH . J 4 HOH B 30 730 46 HOH HOH . J 4 HOH B 31 731 23 HOH HOH . J 4 HOH B 32 732 8 HOH HOH . J 4 HOH B 33 733 38 HOH HOH . J 4 HOH B 34 734 84 HOH HOH . J 4 HOH B 35 735 78 HOH HOH . J 4 HOH B 36 736 98 HOH HOH . J 4 HOH B 37 737 72 HOH HOH . J 4 HOH B 38 738 86 HOH HOH . J 4 HOH B 39 739 99 HOH HOH . J 4 HOH B 40 740 45 HOH HOH . J 4 HOH B 41 741 61 HOH HOH . J 4 HOH B 42 742 69 HOH HOH . J 4 HOH B 43 743 101 HOH HOH . J 4 HOH B 44 744 71 HOH HOH . J 4 HOH B 45 745 97 HOH HOH . J 4 HOH B 46 746 62 HOH HOH . J 4 HOH B 47 747 91 HOH HOH . J 4 HOH B 48 748 90 HOH HOH . J 4 HOH B 49 749 53 HOH HOH . J 4 HOH B 50 750 73 HOH HOH . J 4 HOH B 51 751 100 HOH HOH . J 4 HOH B 52 752 76 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x -11.1 _atom_site.Cartn_y -16.588 _atom_site.Cartn_z -20.832 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 41.08 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 602 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 262 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #