data_7DIM # _model_server_result.job_id EB0m-nmMe-LDuqlLNoebCw _model_server_result.datetime_utc '2024-10-10 06:28:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7dim # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":214}' # _entry.id 7DIM # _exptl.entry_id 7DIM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 112.411 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CADMIUM ION' _entity.pdbx_number_of_molecules 13 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7DIM _cell.length_a 48.35 _cell.length_b 48.35 _cell.length_c 83.002 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7DIM _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N ? 4 K N N ? 4 L N N ? 4 M N N ? 4 N N N ? 4 O N N ? 4 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 29 A CYS 29 1_555 A SG CYS 32 A CYS 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc1 A OE1 GLU 18 A GLU 18 1_555 J CD CD . A CD 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.655 ? metalc ? metalc2 A OE2 GLU 18 A GLU 18 1_555 J CD CD . A CD 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.692 ? metalc ? metalc3 A OE2 GLU 28 A GLU 28 1_555 L CD CD . A CD 211 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.684 ? metalc ? metalc4 A OE2 GLU 28 A GLU 28 1_555 P CD CD . A CD 215 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.652 ? metalc ? metalc5 A O GLY 41 A GLY 41 1_555 M CD CD . A CD 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.547 ? metalc ? metalc6 A OD1 ASN 43 A ASN 43 1_555 I CD CD . A CD 208 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.502 ? metalc ? metalc7 A NE2 HIS 49 A HIS 49 1_555 E CD CD . A CD 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.548 ? metalc ? metalc8 A ND1 HIS 49 A HIS 49 1_555 G CD CD . A CD 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.561 ? metalc ? metalc9 A ND1 HIS 49 A HIS 49 1_555 O CD CD . A CD 214 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.419 ? metalc ? metalc10 A OE1 GLU 51 A GLU 51 1_555 E CD CD . A CD 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc11 A OD2 ASP 58 A ASP 58 1_555 H CD CD . A CD 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.584 ? metalc ? metalc12 A OD1 ASP 83 A ASP 83 1_555 F CD CD . A CD 205 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.641 ? metalc ? metalc13 A OD2 ASP 83 A ASP 83 1_555 F CD CD . A CD 205 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.576 ? metalc ? metalc14 A OD2 ASP 90 A ASP 90 1_555 D CD CD . A CD 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? metalc ? metalc15 D CD CD . A CD 203 1_555 S O HOH . A HOH 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.478 ? metalc ? metalc16 D CD CD . A CD 203 1_555 S O HOH . A HOH 399 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.602 ? metalc ? metalc17 D CD CD . A CD 203 1_555 S O HOH . A HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.541 ? metalc ? metalc18 E CD CD . A CD 204 1_555 S O HOH . A HOH 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.59 ? metalc ? metalc19 G CD CD . A CD 206 1_555 S O HOH . A HOH 314 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.252 ? metalc ? metalc20 G CD CD . A CD 206 1_555 S O HOH . A HOH 314 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.146 ? metalc ? metalc21 G CD CD . A CD 206 1_555 S O HOH . A HOH 367 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.282 ? metalc ? metalc22 G CD CD . A CD 206 1_555 S O HOH . A HOH 424 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.656 ? metalc ? metalc23 I CD CD . A CD 208 1_555 S O HOH . A HOH 407 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.273 ? metalc ? metalc24 I CD CD . A CD 208 1_555 S O HOH . A HOH 444 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.536 ? metalc ? metalc25 J CD CD . A CD 209 1_555 S O HOH . A HOH 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.651 ? metalc ? metalc26 J CD CD . A CD 209 1_555 S O HOH . A HOH 414 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.698 ? metalc ? metalc27 M CD CD . A CD 212 1_555 S O HOH . A HOH 370 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc28 M CD CD . A CD 212 1_555 S O HOH . A HOH 407 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.234 ? metalc ? metalc29 M CD CD . A CD 212 1_555 S O HOH . A HOH 440 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc30 N CD CD . A CD 213 1_555 S O HOH . A HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.686 ? # _chem_comp.formula 'Cd 2' _chem_comp.formula_weight 112.411 _chem_comp.id CD _chem_comp.mon_nstd_flag . _chem_comp.name 'CADMIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7DIM _atom_sites.fract_transf_matrix[1][1] 0.020683 _atom_sites.fract_transf_matrix[1][2] 0.011941 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023882 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012048 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MPO A 1 201 201 MPO MPO . C 3 MPD A 1 202 202 MPD MPD . D 4 CD A 1 203 301 CD CD . E 4 CD A 1 204 302 CD CD . F 4 CD A 1 205 303 CD CD . G 4 CD A 1 206 304 CD CD . H 4 CD A 1 207 305 CD CD . I 4 CD A 1 208 306 CD CD . J 4 CD A 1 209 307 CD CD . K 4 CD A 1 210 308 CD CD . L 4 CD A 1 211 309 CD CD . M 4 CD A 1 212 310 CD CD . N 4 CD A 1 213 311 CD CD . O 4 CD A 1 214 312 CD CD . P 4 CD A 1 215 313 CD CD . Q 5 CL A 1 216 351 CL CL . R 5 CL A 1 217 352 CL CL . S 6 HOH A 1 301 29 HOH HOH . S 6 HOH A 2 302 61 HOH HOH . S 6 HOH A 3 303 108 HOH HOH . S 6 HOH A 4 304 15 HOH HOH . S 6 HOH A 5 305 68 HOH HOH . S 6 HOH A 6 306 84 HOH HOH . S 6 HOH A 7 307 100 HOH HOH . S 6 HOH A 8 308 14 HOH HOH . S 6 HOH A 9 309 16 HOH HOH . S 6 HOH A 10 310 76 HOH HOH . S 6 HOH A 11 311 129 HOH HOH . S 6 HOH A 12 312 62 HOH HOH . S 6 HOH A 13 313 5 HOH HOH . S 6 HOH A 14 314 123 HOH HOH . S 6 HOH A 15 315 30 HOH HOH . S 6 HOH A 16 316 91 HOH HOH . S 6 HOH A 17 317 121 HOH HOH . S 6 HOH A 18 318 54 HOH HOH . S 6 HOH A 19 319 136 HOH HOH . S 6 HOH A 20 320 86 HOH HOH . S 6 HOH A 21 321 135 HOH HOH . S 6 HOH A 22 322 13 HOH HOH . S 6 HOH A 23 323 27 HOH HOH . S 6 HOH A 24 324 72 HOH HOH . S 6 HOH A 25 325 32 HOH HOH . S 6 HOH A 26 326 102 HOH HOH . S 6 HOH A 27 327 133 HOH HOH . S 6 HOH A 28 328 51 HOH HOH . S 6 HOH A 29 329 36 HOH HOH . S 6 HOH A 30 330 37 HOH HOH . S 6 HOH A 31 331 83 HOH HOH . S 6 HOH A 32 332 31 HOH HOH . S 6 HOH A 33 333 117 HOH HOH . S 6 HOH A 34 334 10 HOH HOH . S 6 HOH A 35 335 56 HOH HOH . S 6 HOH A 36 336 58 HOH HOH . S 6 HOH A 37 337 40 HOH HOH . S 6 HOH A 38 338 125 HOH HOH . S 6 HOH A 39 339 2 HOH HOH . S 6 HOH A 40 340 7 HOH HOH . S 6 HOH A 41 341 65 HOH HOH . S 6 HOH A 42 342 3 HOH HOH . S 6 HOH A 43 343 109 HOH HOH . S 6 HOH A 44 344 73 HOH HOH . S 6 HOH A 45 345 4 HOH HOH . S 6 HOH A 46 346 12 HOH HOH . S 6 HOH A 47 347 134 HOH HOH . S 6 HOH A 48 348 75 HOH HOH . S 6 HOH A 49 349 127 HOH HOH . S 6 HOH A 50 350 67 HOH HOH . S 6 HOH A 51 351 78 HOH HOH . S 6 HOH A 52 352 63 HOH HOH . S 6 HOH A 53 353 103 HOH HOH . S 6 HOH A 54 354 45 HOH HOH . S 6 HOH A 55 355 19 HOH HOH . S 6 HOH A 56 356 26 HOH HOH . S 6 HOH A 57 357 79 HOH HOH . S 6 HOH A 58 358 43 HOH HOH . S 6 HOH A 59 359 11 HOH HOH . S 6 HOH A 60 360 44 HOH HOH . S 6 HOH A 61 361 8 HOH HOH . S 6 HOH A 62 362 50 HOH HOH . S 6 HOH A 63 363 1 HOH HOH . S 6 HOH A 64 364 47 HOH HOH . S 6 HOH A 65 365 52 HOH HOH . S 6 HOH A 66 366 70 HOH HOH . S 6 HOH A 67 367 143 HOH HOH . S 6 HOH A 68 368 17 HOH HOH . S 6 HOH A 69 369 55 HOH HOH . S 6 HOH A 70 370 46 HOH HOH . S 6 HOH A 71 371 35 HOH HOH . S 6 HOH A 72 372 104 HOH HOH . S 6 HOH A 73 373 28 HOH HOH . S 6 HOH A 74 374 38 HOH HOH . S 6 HOH A 75 375 9 HOH HOH . S 6 HOH A 76 376 42 HOH HOH . S 6 HOH A 77 377 20 HOH HOH . S 6 HOH A 78 378 22 HOH HOH . S 6 HOH A 79 379 107 HOH HOH . S 6 HOH A 80 380 57 HOH HOH . S 6 HOH A 81 381 33 HOH HOH . S 6 HOH A 82 382 137 HOH HOH . S 6 HOH A 83 383 77 HOH HOH . S 6 HOH A 84 384 53 HOH HOH . S 6 HOH A 85 385 85 HOH HOH . S 6 HOH A 86 386 23 HOH HOH . S 6 HOH A 87 387 110 HOH HOH . S 6 HOH A 88 388 130 HOH HOH . S 6 HOH A 89 389 126 HOH HOH . S 6 HOH A 90 390 116 HOH HOH . S 6 HOH A 91 391 64 HOH HOH . S 6 HOH A 92 392 118 HOH HOH . S 6 HOH A 93 393 87 HOH HOH . S 6 HOH A 94 394 106 HOH HOH . S 6 HOH A 95 395 120 HOH HOH . S 6 HOH A 96 396 6 HOH HOH . S 6 HOH A 97 397 124 HOH HOH . S 6 HOH A 98 398 138 HOH HOH . S 6 HOH A 99 399 25 HOH HOH . S 6 HOH A 100 400 140 HOH HOH . S 6 HOH A 101 401 21 HOH HOH . S 6 HOH A 102 402 131 HOH HOH . S 6 HOH A 103 403 101 HOH HOH . S 6 HOH A 104 404 74 HOH HOH . S 6 HOH A 105 405 128 HOH HOH . S 6 HOH A 106 406 139 HOH HOH . S 6 HOH A 107 407 18 HOH HOH . S 6 HOH A 108 408 39 HOH HOH . S 6 HOH A 109 409 24 HOH HOH . S 6 HOH A 110 410 82 HOH HOH . S 6 HOH A 111 411 99 HOH HOH . S 6 HOH A 112 412 97 HOH HOH . S 6 HOH A 113 413 48 HOH HOH . S 6 HOH A 114 414 69 HOH HOH . S 6 HOH A 115 415 114 HOH HOH . S 6 HOH A 116 416 96 HOH HOH . S 6 HOH A 117 417 71 HOH HOH . S 6 HOH A 118 418 141 HOH HOH . S 6 HOH A 119 419 34 HOH HOH . S 6 HOH A 120 420 113 HOH HOH . S 6 HOH A 121 421 115 HOH HOH . S 6 HOH A 122 422 95 HOH HOH . S 6 HOH A 123 423 89 HOH HOH . S 6 HOH A 124 424 144 HOH HOH . S 6 HOH A 125 425 80 HOH HOH . S 6 HOH A 126 426 88 HOH HOH . S 6 HOH A 127 427 119 HOH HOH . S 6 HOH A 128 428 60 HOH HOH . S 6 HOH A 129 429 49 HOH HOH . S 6 HOH A 130 430 132 HOH HOH . S 6 HOH A 131 431 41 HOH HOH . S 6 HOH A 132 432 93 HOH HOH . S 6 HOH A 133 433 94 HOH HOH . S 6 HOH A 134 434 92 HOH HOH . S 6 HOH A 135 435 112 HOH HOH . S 6 HOH A 136 436 90 HOH HOH . S 6 HOH A 137 437 59 HOH HOH . S 6 HOH A 138 438 105 HOH HOH . S 6 HOH A 139 439 66 HOH HOH . S 6 HOH A 140 440 122 HOH HOH . S 6 HOH A 141 441 98 HOH HOH . S 6 HOH A 142 442 81 HOH HOH . S 6 HOH A 143 443 111 HOH HOH . S 6 HOH A 144 444 142 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CD _atom_site.label_atom_id CD _atom_site.label_comp_id CD _atom_site.label_seq_id . _atom_site.label_alt_id B _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id O _atom_site.label_entity_id 4 _atom_site.Cartn_x 24.032 _atom_site.Cartn_y 13.302 _atom_site.Cartn_z -5.951 _atom_site.occupancy 0.26 _atom_site.B_iso_or_equiv 59.72 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CD _atom_site.auth_comp_id CD _atom_site.auth_seq_id 214 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #