data_7DIO
#
_model_server_result.job_id            tnxeM80EwYU6EFx__Yi0WA 
_model_server_result.datetime_utc      '2024-10-10 09:24:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7dio 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":202}' 
#
_entry.id    7DIO 
#
_exptl.entry_id    7DIO 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              118.174 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (4S)-2-METHYL-2,4-PENTANEDIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            7DIO 
_cell.length_a            48.142 
_cell.length_b            48.142 
_cell.length_c            82.832 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7DIO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 29 A CYS 29 1_555 A SG CYS 32 A CYS 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
metalc ? metalc1 A NE2 HIS 49 A HIS 49 1_555 D FE FE . A FE 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? 
metalc ? metalc2 A OE1 GLU 51 A GLU 51 1_555 D FE FE . A FE 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.935 ? 
metalc ? metalc3 D FE FE . A FE 203 1_555 F O HOH . A HOH 327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? 
metalc ? metalc4 D FE FE . A FE 203 1_555 F O HOH . A HOH 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? 
metalc ? metalc5 D FE FE . A FE 203 1_555 F O HOH . A HOH 380 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? 
metalc ? metalc6 D FE FE . A FE 203 1_555 F O HOH . A HOH 396 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? 
metalc ? metalc7 E FE FE . A FE 204 1_555 F O HOH . A HOH 389 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.555 ? 
#
_chem_comp.formula           'C6 H14 O2' 
_chem_comp.formula_weight    118.174 
_chem_comp.id                MPD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (4S)-2-METHYL-2,4-PENTANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     7DIO 
_atom_sites.fract_transf_matrix[1][1]    0.020772 
_atom_sites.fract_transf_matrix[1][2]    0.011993 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.023985 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012073 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MPO A 1 201 201 MPO MPO . 
C 3 MPD A 1 202 202 MPD MPD . 
D 4 FE A 1 203 301 FE FE . 
E 4 FE A 1 204 302 FE FE . 
F 5 HOH A 1 301 56 HOH HOH . 
F 5 HOH A 2 302 60 HOH HOH . 
F 5 HOH A 3 303 87 HOH HOH . 
F 5 HOH A 4 304 30 HOH HOH . 
F 5 HOH A 5 305 50 HOH HOH . 
F 5 HOH A 6 306 67 HOH HOH . 
F 5 HOH A 7 307 35 HOH HOH . 
F 5 HOH A 8 308 33 HOH HOH . 
F 5 HOH A 9 309 27 HOH HOH . 
F 5 HOH A 10 310 43 HOH HOH . 
F 5 HOH A 11 311 23 HOH HOH . 
F 5 HOH A 12 312 68 HOH HOH . 
F 5 HOH A 13 313 97 HOH HOH . 
F 5 HOH A 14 314 13 HOH HOH . 
F 5 HOH A 15 315 109 HOH HOH . 
F 5 HOH A 16 316 105 HOH HOH . 
F 5 HOH A 17 317 95 HOH HOH . 
F 5 HOH A 18 318 19 HOH HOH . 
F 5 HOH A 19 319 12 HOH HOH . 
F 5 HOH A 20 320 6 HOH HOH . 
F 5 HOH A 21 321 51 HOH HOH . 
F 5 HOH A 22 322 41 HOH HOH . 
F 5 HOH A 23 323 76 HOH HOH . 
F 5 HOH A 24 324 79 HOH HOH . 
F 5 HOH A 25 325 104 HOH HOH . 
F 5 HOH A 26 326 59 HOH HOH . 
F 5 HOH A 27 327 38 HOH HOH . 
F 5 HOH A 28 328 65 HOH HOH . 
F 5 HOH A 29 329 9 HOH HOH . 
F 5 HOH A 30 330 4 HOH HOH . 
F 5 HOH A 31 331 20 HOH HOH . 
F 5 HOH A 32 332 15 HOH HOH . 
F 5 HOH A 33 333 96 HOH HOH . 
F 5 HOH A 34 334 73 HOH HOH . 
F 5 HOH A 35 335 7 HOH HOH . 
F 5 HOH A 36 336 70 HOH HOH . 
F 5 HOH A 37 337 1 HOH HOH . 
F 5 HOH A 38 338 82 HOH HOH . 
F 5 HOH A 39 339 5 HOH HOH . 
F 5 HOH A 40 340 61 HOH HOH . 
F 5 HOH A 41 341 32 HOH HOH . 
F 5 HOH A 42 342 8 HOH HOH . 
F 5 HOH A 43 343 36 HOH HOH . 
F 5 HOH A 44 344 31 HOH HOH . 
F 5 HOH A 45 345 74 HOH HOH . 
F 5 HOH A 46 346 100 HOH HOH . 
F 5 HOH A 47 347 3 HOH HOH . 
F 5 HOH A 48 348 117 HOH HOH . 
F 5 HOH A 49 349 18 HOH HOH . 
F 5 HOH A 50 350 42 HOH HOH . 
F 5 HOH A 51 351 64 HOH HOH . 
F 5 HOH A 52 352 75 HOH HOH . 
F 5 HOH A 53 353 26 HOH HOH . 
F 5 HOH A 54 354 46 HOH HOH . 
F 5 HOH A 55 355 77 HOH HOH . 
F 5 HOH A 56 356 17 HOH HOH . 
F 5 HOH A 57 357 37 HOH HOH . 
F 5 HOH A 58 358 21 HOH HOH . 
F 5 HOH A 59 359 44 HOH HOH . 
F 5 HOH A 60 360 39 HOH HOH . 
F 5 HOH A 61 361 48 HOH HOH . 
F 5 HOH A 62 362 16 HOH HOH . 
F 5 HOH A 63 363 25 HOH HOH . 
F 5 HOH A 64 364 28 HOH HOH . 
F 5 HOH A 65 365 2 HOH HOH . 
F 5 HOH A 66 366 106 HOH HOH . 
F 5 HOH A 67 367 52 HOH HOH . 
F 5 HOH A 68 368 14 HOH HOH . 
F 5 HOH A 69 369 22 HOH HOH . 
F 5 HOH A 70 370 71 HOH HOH . 
F 5 HOH A 71 371 11 HOH HOH . 
F 5 HOH A 72 372 63 HOH HOH . 
F 5 HOH A 73 373 118 HOH HOH . 
F 5 HOH A 74 374 72 HOH HOH . 
F 5 HOH A 75 375 116 HOH HOH . 
F 5 HOH A 76 376 57 HOH HOH . 
F 5 HOH A 77 377 29 HOH HOH . 
F 5 HOH A 78 378 10 HOH HOH . 
F 5 HOH A 79 379 91 HOH HOH . 
F 5 HOH A 80 380 34 HOH HOH . 
F 5 HOH A 81 381 54 HOH HOH . 
F 5 HOH A 82 382 81 HOH HOH . 
F 5 HOH A 83 383 24 HOH HOH . 
F 5 HOH A 84 384 90 HOH HOH . 
F 5 HOH A 85 385 58 HOH HOH . 
F 5 HOH A 86 386 86 HOH HOH . 
F 5 HOH A 87 387 103 HOH HOH . 
F 5 HOH A 88 388 99 HOH HOH . 
F 5 HOH A 89 389 113 HOH HOH . 
F 5 HOH A 90 390 115 HOH HOH . 
F 5 HOH A 91 391 122 HOH HOH . 
F 5 HOH A 92 392 108 HOH HOH . 
F 5 HOH A 93 393 120 HOH HOH . 
F 5 HOH A 94 394 69 HOH HOH . 
F 5 HOH A 95 395 121 HOH HOH . 
F 5 HOH A 96 396 49 HOH HOH . 
F 5 HOH A 97 397 107 HOH HOH . 
F 5 HOH A 98 398 92 HOH HOH . 
F 5 HOH A 99 399 111 HOH HOH . 
F 5 HOH A 100 400 84 HOH HOH . 
F 5 HOH A 101 401 119 HOH HOH . 
F 5 HOH A 102 402 98 HOH HOH . 
F 5 HOH A 103 403 83 HOH HOH . 
F 5 HOH A 104 404 45 HOH HOH . 
F 5 HOH A 105 405 62 HOH HOH . 
F 5 HOH A 106 406 89 HOH HOH . 
F 5 HOH A 107 407 101 HOH HOH . 
F 5 HOH A 108 408 93 HOH HOH . 
F 5 HOH A 109 409 53 HOH HOH . 
F 5 HOH A 110 410 114 HOH HOH . 
F 5 HOH A 111 411 66 HOH HOH . 
F 5 HOH A 112 412 40 HOH HOH . 
F 5 HOH A 113 413 102 HOH HOH . 
F 5 HOH A 114 414 88 HOH HOH . 
F 5 HOH A 115 415 112 HOH HOH . 
F 5 HOH A 116 416 110 HOH HOH . 
F 5 HOH A 117 417 55 HOH HOH . 
F 5 HOH A 118 418 78 HOH HOH . 
F 5 HOH A 119 419 47 HOH HOH . 
F 5 HOH A 120 420 94 HOH HOH . 
F 5 HOH A 121 421 80 HOH HOH . 
F 5 HOH A 122 422 85 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MPD . . . C 3 -17.086 20.643 -9.092 1 50.34 ? C1 MPD 202 A 1 
HETATM 2 C C2 MPD . . . C 3 -18.459 20.563 -9.742 1 49.99 ? C2 MPD 202 A 1 
HETATM 3 O O2 MPD . . . C 3 -19.398 20.01 -8.794 1 53.92 ? O2 MPD 202 A 1 
HETATM 4 C CM MPD . . . C 3 -18.924 21.97 -10.097 1 51.6 ? CM MPD 202 A 1 
HETATM 5 C C3 MPD . . . C 3 -18.423 19.685 -10.993 1 55.11 ? C3 MPD 202 A 1 
HETATM 6 C C4 MPD . . . C 3 -17.755 18.326 -10.778 1 59.65 ? C4 MPD 202 A 1 
HETATM 7 O O4 MPD . . . C 3 -18.634 17.268 -11.095 1 53.35 ? O4 MPD 202 A 1 
HETATM 8 C C5 MPD . . . C 3 -16.518 18.185 -11.659 1 70.09 ? C5 MPD 202 A 1 
#
_model_server_stats.io_time_ms              35 
_model_server_stats.parse_time_ms           24 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           267 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           8 
#