data_7DIS # _model_server_result.job_id UopRVbo72r2h-D0ePAT8Kg _model_server_result.datetime_utc '2024-10-10 09:33:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7dis # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 7DIS # _exptl.entry_id 7DIS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7DIS _cell.length_a 48.492 _cell.length_b 48.492 _cell.length_c 82.69 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7DIS _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 29 A CYS 29 1_555 A SG CYS 32 A CYS 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc1 A ND1 HIS 49 A HIS 49 1_555 D PT PT . A PT 203 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.282 ? metalc ? metalc2 A ND1 HIS 49 A HIS 49 1_555 D PT PT . A PT 203 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.062 ? metalc ? metalc3 A SD MET 59 A MET 59 1_555 E PT PT . A PT 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.217 ? metalc ? metalc4 A NZ LYS 93 A LYS 93 1_555 E PT PT . A PT 204 4_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc5 E PT PT . A PT 204 1_555 F O HOH . A HOH 374 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7DIS _atom_sites.fract_transf_matrix[1][1] 0.020622 _atom_sites.fract_transf_matrix[1][2] 0.011906 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023812 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012093 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MPO A 1 201 201 MPO MPO . C 3 MPD A 1 202 202 MPD MPD . D 4 PT A 1 203 301 PT PT . E 4 PT A 1 204 302 PT PT . F 5 HOH A 1 301 12 HOH HOH . F 5 HOH A 2 302 55 HOH HOH . F 5 HOH A 3 303 22 HOH HOH . F 5 HOH A 4 304 51 HOH HOH . F 5 HOH A 5 305 49 HOH HOH . F 5 HOH A 6 306 13 HOH HOH . F 5 HOH A 7 307 35 HOH HOH . F 5 HOH A 8 308 60 HOH HOH . F 5 HOH A 9 309 74 HOH HOH . F 5 HOH A 10 310 45 HOH HOH . F 5 HOH A 11 311 29 HOH HOH . F 5 HOH A 12 312 66 HOH HOH . F 5 HOH A 13 313 32 HOH HOH . F 5 HOH A 14 314 42 HOH HOH . F 5 HOH A 15 315 23 HOH HOH . F 5 HOH A 16 316 7 HOH HOH . F 5 HOH A 17 317 15 HOH HOH . F 5 HOH A 18 318 14 HOH HOH . F 5 HOH A 19 319 63 HOH HOH . F 5 HOH A 20 320 8 HOH HOH . F 5 HOH A 21 321 24 HOH HOH . F 5 HOH A 22 322 43 HOH HOH . F 5 HOH A 23 323 44 HOH HOH . F 5 HOH A 24 324 62 HOH HOH . F 5 HOH A 25 325 33 HOH HOH . F 5 HOH A 26 326 59 HOH HOH . F 5 HOH A 27 327 4 HOH HOH . F 5 HOH A 28 328 54 HOH HOH . F 5 HOH A 29 329 25 HOH HOH . F 5 HOH A 30 330 11 HOH HOH . F 5 HOH A 31 331 3 HOH HOH . F 5 HOH A 32 332 47 HOH HOH . F 5 HOH A 33 333 10 HOH HOH . F 5 HOH A 34 334 41 HOH HOH . F 5 HOH A 35 335 20 HOH HOH . F 5 HOH A 36 336 39 HOH HOH . F 5 HOH A 37 337 17 HOH HOH . F 5 HOH A 38 338 65 HOH HOH . F 5 HOH A 39 339 72 HOH HOH . F 5 HOH A 40 340 21 HOH HOH . F 5 HOH A 41 341 27 HOH HOH . F 5 HOH A 42 342 6 HOH HOH . F 5 HOH A 43 343 2 HOH HOH . F 5 HOH A 44 344 64 HOH HOH . F 5 HOH A 45 345 19 HOH HOH . F 5 HOH A 46 346 68 HOH HOH . F 5 HOH A 47 347 18 HOH HOH . F 5 HOH A 48 348 48 HOH HOH . F 5 HOH A 49 349 46 HOH HOH . F 5 HOH A 50 350 16 HOH HOH . F 5 HOH A 51 351 69 HOH HOH . F 5 HOH A 52 352 26 HOH HOH . F 5 HOH A 53 353 5 HOH HOH . F 5 HOH A 54 354 9 HOH HOH . F 5 HOH A 55 355 1 HOH HOH . F 5 HOH A 56 356 30 HOH HOH . F 5 HOH A 57 357 34 HOH HOH . F 5 HOH A 58 358 36 HOH HOH . F 5 HOH A 59 359 75 HOH HOH . F 5 HOH A 60 360 40 HOH HOH . F 5 HOH A 61 361 58 HOH HOH . F 5 HOH A 62 362 31 HOH HOH . F 5 HOH A 63 363 52 HOH HOH . F 5 HOH A 64 364 57 HOH HOH . F 5 HOH A 65 365 28 HOH HOH . F 5 HOH A 66 366 71 HOH HOH . F 5 HOH A 67 367 73 HOH HOH . F 5 HOH A 68 368 37 HOH HOH . F 5 HOH A 69 369 53 HOH HOH . F 5 HOH A 70 370 38 HOH HOH . F 5 HOH A 71 371 67 HOH HOH . F 5 HOH A 72 372 70 HOH HOH . F 5 HOH A 73 373 56 HOH HOH . F 5 HOH A 74 374 50 HOH HOH . F 5 HOH A 75 375 61 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . C 3 33.677 -16.69 4.797 1 64.74 ? C1 MPD 202 A 1 HETATM 2 C C2 MPD . . . C 3 32.999 -15.5 4.131 1 64.33 ? C2 MPD 202 A 1 HETATM 3 O O2 MPD . . . C 3 31.999 -14.958 5.031 1 61.67 ? O2 MPD 202 A 1 HETATM 4 C CM MPD . . . C 3 34.039 -14.424 3.842 1 63.69 ? CM MPD 202 A 1 HETATM 5 C C3 MPD . . . C 3 32.326 -15.928 2.83 1 69.69 ? C3 MPD 202 A 1 HETATM 6 C C4 MPD . . . C 3 31.457 -17.166 3.02 1 75.42 ? C4 MPD 202 A 1 HETATM 7 O O4 MPD . . . C 3 30.091 -16.815 2.988 1 71.81 ? O4 MPD 202 A 1 HETATM 8 C C5 MPD . . . C 3 31.746 -18.194 1.931 1 80.16 ? C5 MPD 202 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 8 #