data_7DIW # _model_server_result.job_id UAaWsZrbS1u35RchHE-7Bw _model_server_result.datetime_utc '2024-10-10 13:23:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7diw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 7DIW # _exptl.entry_id 7DIW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7DIW _cell.length_a 48.169 _cell.length_b 48.169 _cell.length_c 83.134 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7DIW _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLU 28 A GLU 28 1_555 A N CSO 29 A CSO 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale2 A C CSO 29 A CSO 29 1_555 A N PRO 30 A PRO 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? metalc ? metalc1 A SG CYS 88 A CYS 88 1_555 D HG HG . A HG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.297 ? metalc ? metalc2 A OD1 ASP 89 A ASP 89 1_555 D HG HG . A HG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.791 ? metalc ? metalc3 D HG HG . A HG 203 1_555 E O HOH . A HOH 319 6_664 ? ? ? ? ? ? ? ? ? ? ? ? 2.803 ? # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 251 n n C1 H11 MPD sing 252 n n C1 H12 MPD sing 253 n n C1 H13 MPD sing 254 n n C2 O2 MPD sing 255 n n C2 CM MPD sing 256 n n C2 C3 MPD sing 257 n n O2 HO2 MPD sing 258 n n CM HM1 MPD sing 259 n n CM HM2 MPD sing 260 n n CM HM3 MPD sing 261 n n C3 C4 MPD sing 262 n n C3 H31 MPD sing 263 n n C3 H32 MPD sing 264 n n C4 O4 MPD sing 265 n n C4 C5 MPD sing 266 n n C4 H4 MPD sing 267 n n O4 HO4 MPD sing 268 n n C5 H51 MPD sing 269 n n C5 H52 MPD sing 270 n n C5 H53 MPD sing 271 n n # _atom_sites.entry_id 7DIW _atom_sites.fract_transf_matrix[1][1] 0.02076 _atom_sites.fract_transf_matrix[1][2] 0.011986 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023972 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012029 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MPO A 1 201 201 MPO MPO . C 3 MPD A 1 202 251 MPD MPD . D 4 HG A 1 203 301 HG HG . E 5 HOH A 1 301 137 HOH HOH . E 5 HOH A 2 302 129 HOH HOH . E 5 HOH A 3 303 146 HOH HOH . E 5 HOH A 4 304 143 HOH HOH . E 5 HOH A 5 305 42 HOH HOH . E 5 HOH A 6 306 44 HOH HOH . E 5 HOH A 7 307 11 HOH HOH . E 5 HOH A 8 308 134 HOH HOH . E 5 HOH A 9 309 39 HOH HOH . E 5 HOH A 10 310 79 HOH HOH . E 5 HOH A 11 311 120 HOH HOH . E 5 HOH A 12 312 21 HOH HOH . E 5 HOH A 13 313 67 HOH HOH . E 5 HOH A 14 314 24 HOH HOH . E 5 HOH A 15 315 20 HOH HOH . E 5 HOH A 16 316 82 HOH HOH . E 5 HOH A 17 317 57 HOH HOH . E 5 HOH A 18 318 56 HOH HOH . E 5 HOH A 19 319 2 HOH HOH . E 5 HOH A 20 320 41 HOH HOH . E 5 HOH A 21 321 138 HOH HOH . E 5 HOH A 22 322 52 HOH HOH . E 5 HOH A 23 323 51 HOH HOH . E 5 HOH A 24 324 86 HOH HOH . E 5 HOH A 25 325 58 HOH HOH . E 5 HOH A 26 326 91 HOH HOH . E 5 HOH A 27 327 9 HOH HOH . E 5 HOH A 28 328 10 HOH HOH . E 5 HOH A 29 329 97 HOH HOH . E 5 HOH A 30 330 55 HOH HOH . E 5 HOH A 31 331 36 HOH HOH . E 5 HOH A 32 332 148 HOH HOH . E 5 HOH A 33 333 18 HOH HOH . E 5 HOH A 34 334 119 HOH HOH . E 5 HOH A 35 335 107 HOH HOH . E 5 HOH A 36 336 93 HOH HOH . E 5 HOH A 37 337 88 HOH HOH . E 5 HOH A 38 338 95 HOH HOH . E 5 HOH A 39 339 5 HOH HOH . E 5 HOH A 40 340 125 HOH HOH . E 5 HOH A 41 341 103 HOH HOH . E 5 HOH A 42 342 73 HOH HOH . E 5 HOH A 43 343 75 HOH HOH . E 5 HOH A 44 344 71 HOH HOH . E 5 HOH A 45 345 3 HOH HOH . E 5 HOH A 46 346 84 HOH HOH . E 5 HOH A 47 347 17 HOH HOH . E 5 HOH A 48 348 141 HOH HOH . E 5 HOH A 49 349 87 HOH HOH . E 5 HOH A 50 350 8 HOH HOH . E 5 HOH A 51 351 136 HOH HOH . E 5 HOH A 52 352 45 HOH HOH . E 5 HOH A 53 353 104 HOH HOH . E 5 HOH A 54 354 25 HOH HOH . E 5 HOH A 55 355 7 HOH HOH . E 5 HOH A 56 356 92 HOH HOH . E 5 HOH A 57 357 34 HOH HOH . E 5 HOH A 58 358 72 HOH HOH . E 5 HOH A 59 359 12 HOH HOH . E 5 HOH A 60 360 13 HOH HOH . E 5 HOH A 61 361 61 HOH HOH . E 5 HOH A 62 362 28 HOH HOH . E 5 HOH A 63 363 35 HOH HOH . E 5 HOH A 64 364 46 HOH HOH . E 5 HOH A 65 365 49 HOH HOH . E 5 HOH A 66 366 48 HOH HOH . E 5 HOH A 67 367 6 HOH HOH . E 5 HOH A 68 368 23 HOH HOH . E 5 HOH A 69 369 38 HOH HOH . E 5 HOH A 70 370 4 HOH HOH . E 5 HOH A 71 371 19 HOH HOH . E 5 HOH A 72 372 14 HOH HOH . E 5 HOH A 73 373 29 HOH HOH . E 5 HOH A 74 374 114 HOH HOH . E 5 HOH A 75 375 40 HOH HOH . E 5 HOH A 76 376 33 HOH HOH . E 5 HOH A 77 377 111 HOH HOH . E 5 HOH A 78 378 76 HOH HOH . E 5 HOH A 79 379 27 HOH HOH . E 5 HOH A 80 380 108 HOH HOH . E 5 HOH A 81 381 149 HOH HOH . E 5 HOH A 82 382 126 HOH HOH . E 5 HOH A 83 383 1 HOH HOH . E 5 HOH A 84 384 153 HOH HOH . E 5 HOH A 85 385 15 HOH HOH . E 5 HOH A 86 386 102 HOH HOH . E 5 HOH A 87 387 133 HOH HOH . E 5 HOH A 88 388 22 HOH HOH . E 5 HOH A 89 389 53 HOH HOH . E 5 HOH A 90 390 26 HOH HOH . E 5 HOH A 91 391 74 HOH HOH . E 5 HOH A 92 392 62 HOH HOH . E 5 HOH A 93 393 110 HOH HOH . E 5 HOH A 94 394 43 HOH HOH . E 5 HOH A 95 395 47 HOH HOH . E 5 HOH A 96 396 30 HOH HOH . E 5 HOH A 97 397 89 HOH HOH . E 5 HOH A 98 398 59 HOH HOH . E 5 HOH A 99 399 16 HOH HOH . E 5 HOH A 100 400 140 HOH HOH . E 5 HOH A 101 401 100 HOH HOH . E 5 HOH A 102 402 142 HOH HOH . E 5 HOH A 103 403 123 HOH HOH . E 5 HOH A 104 404 50 HOH HOH . E 5 HOH A 105 405 131 HOH HOH . E 5 HOH A 106 406 144 HOH HOH . E 5 HOH A 107 407 118 HOH HOH . E 5 HOH A 108 408 115 HOH HOH . E 5 HOH A 109 409 113 HOH HOH . E 5 HOH A 110 410 77 HOH HOH . E 5 HOH A 111 411 122 HOH HOH . E 5 HOH A 112 412 150 HOH HOH . E 5 HOH A 113 413 116 HOH HOH . E 5 HOH A 114 414 98 HOH HOH . E 5 HOH A 115 415 135 HOH HOH . E 5 HOH A 116 416 66 HOH HOH . E 5 HOH A 117 417 80 HOH HOH . E 5 HOH A 118 418 68 HOH HOH . E 5 HOH A 119 419 152 HOH HOH . E 5 HOH A 120 420 147 HOH HOH . E 5 HOH A 121 421 31 HOH HOH . E 5 HOH A 122 422 99 HOH HOH . E 5 HOH A 123 423 127 HOH HOH . E 5 HOH A 124 424 132 HOH HOH . E 5 HOH A 125 425 81 HOH HOH . E 5 HOH A 126 426 94 HOH HOH . E 5 HOH A 127 427 60 HOH HOH . E 5 HOH A 128 428 130 HOH HOH . E 5 HOH A 129 429 105 HOH HOH . E 5 HOH A 130 430 124 HOH HOH . E 5 HOH A 131 431 70 HOH HOH . E 5 HOH A 132 432 145 HOH HOH . E 5 HOH A 133 433 117 HOH HOH . E 5 HOH A 134 434 69 HOH HOH . E 5 HOH A 135 435 101 HOH HOH . E 5 HOH A 136 436 151 HOH HOH . E 5 HOH A 137 437 106 HOH HOH . E 5 HOH A 138 438 121 HOH HOH . E 5 HOH A 139 439 90 HOH HOH . E 5 HOH A 140 440 64 HOH HOH . E 5 HOH A 141 441 96 HOH HOH . E 5 HOH A 142 442 63 HOH HOH . E 5 HOH A 143 443 32 HOH HOH . E 5 HOH A 144 444 78 HOH HOH . E 5 HOH A 145 445 65 HOH HOH . E 5 HOH A 146 446 54 HOH HOH . E 5 HOH A 147 447 85 HOH HOH . E 5 HOH A 148 448 128 HOH HOH . E 5 HOH A 149 449 112 HOH HOH . E 5 HOH A 150 450 109 HOH HOH . E 5 HOH A 151 451 83 HOH HOH . E 5 HOH A 152 452 37 HOH HOH . E 5 HOH A 153 453 139 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . C 3 16.919 -20.86 -9.289 1 40.6 ? C1 MPD 202 A 1 HETATM 2 C C2 MPD . . . C 3 18.283 -20.77 -9.961 1 43.38 ? C2 MPD 202 A 1 HETATM 3 O O2 MPD . . . C 3 19.247 -20.264 -9.006 1 43.99 ? O2 MPD 202 A 1 HETATM 4 C CM MPD . . . C 3 18.728 -22.158 -10.407 1 40.51 ? CM MPD 202 A 1 HETATM 5 C C3 MPD . . . C 3 18.225 -19.838 -11.167 1 47.28 ? C3 MPD 202 A 1 HETATM 6 C C4 MPD . . . C 3 17.669 -18.461 -10.819 1 51.69 ? C4 MPD 202 A 1 HETATM 7 O O4 MPD . . . C 3 18.66 -17.471 -10.999 1 46.45 ? O4 MPD 202 A 1 HETATM 8 C C5 MPD . . . C 3 16.472 -18.136 -11.706 1 58.8 ? C5 MPD 202 A 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 8 #