data_7DIX # _model_server_result.job_id 3uCUJECIBZtcsXKxolWVNA _model_server_result.datetime_utc '2024-10-16 10:26:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7dix # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 7DIX # _exptl.entry_id 7DIX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 196.106 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description SELENOMETHIONINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.89 _cell.angle_gamma 90 _cell.entry_id 7DIX _cell.length_a 74.162 _cell.length_b 115.07 _cell.length_c 80.819 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7DIX _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,H 1 1 B,F,G,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLY 20 A GLY 20 1_555 E NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc2 A O ALA 22 A ALA 22 1_555 D NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc3 A O VAL 23 A VAL 23 1_555 E NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc4 A OD1 ASN 27 A ASN 27 1_555 D NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc5 A O THR 254 A THR 254 1_555 D NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? metalc ? metalc6 A OG1 THR 254 A THR 254 1_555 D NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc7 A OD1 ASN 286 A ASN 286 1_555 D NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.734 ? metalc ? metalc8 A O ALA 351 A ALA 351 1_555 E NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc9 A OG1 THR 354 A THR 354 1_555 E NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc10 A OG SER 355 A SER 355 1_555 E NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? metalc ? metalc11 C OXT MSE . A MSE 601 1_555 D NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? metalc ? metalc12 B O GLY 20 B GLY 20 1_555 G NA NA . B NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc13 B O VAL 23 B VAL 23 1_555 G NA NA . B NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc14 B O ALA 351 B ALA 351 1_555 G NA NA . B NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? metalc ? metalc15 B OG1 THR 354 B THR 354 1_555 G NA NA . B NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc16 B OG SER 355 B SER 355 1_555 G NA NA . B NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.51 ? # _chem_comp.formula 'C5 H11 N O2 Se' _chem_comp.formula_weight 196.106 _chem_comp.id MSE _chem_comp.mon_nstd_flag n _chem_comp.name SELENOMETHIONINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA MSE sing 224 n n N H MSE sing 225 n n N H2 MSE sing 226 n n CA C MSE sing 227 n n CA CB MSE sing 228 n n CA HA MSE sing 229 n n C O MSE doub 230 n n C OXT MSE sing 231 n n OXT HXT MSE sing 232 n n CB CG MSE sing 233 n n CB HB2 MSE sing 234 n n CB HB3 MSE sing 235 n n CG SE MSE sing 236 n n CG HG2 MSE sing 237 n n CG HG3 MSE sing 238 n n SE CE MSE sing 239 n n CE HE1 MSE sing 240 n n CE HE2 MSE sing 241 n n CE HE3 MSE sing 242 n n # _atom_sites.entry_id 7DIX _atom_sites.fract_transf_matrix[1][1] 0.013484 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003087 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00869 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012693 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MSE A 1 601 601 MSE MSE . D 3 NA A 1 602 701 NA NA . E 3 NA A 1 603 702 NA NA . F 2 MSE B 1 601 601 MSE MSE . G 3 NA B 1 602 702 NA NA . H 4 HOH A 1 701 6 HOH HOH . H 4 HOH A 2 702 7 HOH HOH . I 4 HOH B 1 701 5 HOH HOH . I 4 HOH B 2 702 4 HOH HOH . I 4 HOH B 3 703 3 HOH HOH . I 4 HOH B 4 704 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N MSE . . . C 2 22.859 -26.929 30.744 1 50.33 ? N MSE 601 A 1 HETATM 2 C CA MSE . . . C 2 21.6 -27.654 30.622 1 48.17 ? CA MSE 601 A 1 HETATM 3 C C MSE . . . C 2 21.563 -28.861 31.556 1 49.41 ? C MSE 601 A 1 HETATM 4 O O MSE . . . C 2 20.575 -29.594 31.609 1 46.79 ? O MSE 601 A 1 HETATM 5 O OXT MSE . . . C 2 22.521 -29.135 32.28 1 51.9 ? OXT MSE 601 A 1 HETATM 6 C CB MSE . . . C 2 21.379 -28.096 29.174 1 49.3 ? CB MSE 601 A 1 HETATM 7 C CG MSE . . . C 2 21.45 -26.955 28.171 1 49.86 ? CG MSE 601 A 1 HETATM 8 SE SE MSE . . . C 2 20.189 -25.525 28.582 1 76.35 ? SE MSE 601 A 1 HETATM 9 C CE MSE . . . C 2 18.537 -26.485 28.212 1 45.66 ? CE MSE 601 A 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 9 #