data_7DIZ
#
_model_server_result.job_id            2TJABUmFOn8kdWPGqx7WnA 
_model_server_result.datetime_utc      '2025-08-01 08:22:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7diz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":202}' 
#
_entry.id    7DIZ 
#
_exptl.entry_id    7DIZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              118.174 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (4S)-2-METHYL-2,4-PENTANEDIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            7DIZ 
_cell.length_a            48.357 
_cell.length_b            48.357 
_cell.length_c            82.383 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7DIZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C6 H14 O2' 
_chem_comp.formula_weight    118.174 
_chem_comp.id                MPD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (4S)-2-METHYL-2,4-PENTANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MPD sing 237 n n 
C1 H11 MPD sing 238 n n 
C1 H12 MPD sing 239 n n 
C1 H13 MPD sing 240 n n 
C2 O2 MPD sing 241 n n 
C2 CM MPD sing 242 n n 
C2 C3 MPD sing 243 n n 
O2 HO2 MPD sing 244 n n 
CM HM1 MPD sing 245 n n 
CM HM2 MPD sing 246 n n 
CM HM3 MPD sing 247 n n 
C3 C4 MPD sing 248 n n 
C3 H31 MPD sing 249 n n 
C3 H32 MPD sing 250 n n 
C4 O4 MPD sing 251 n n 
C4 C5 MPD sing 252 n n 
C4 H4 MPD sing 253 n n 
O4 HO4 MPD sing 254 n n 
C5 H51 MPD sing 255 n n 
C5 H52 MPD sing 256 n n 
C5 H53 MPD sing 257 n n 
#
_atom_sites.entry_id                     7DIZ 
_atom_sites.fract_transf_matrix[1][1]    0.02068 
_atom_sites.fract_transf_matrix[1][2]    0.011939 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.023879 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012138 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MPO A 1 201 201 MPO MPO . 
C 3 MPD A 1 202 202 MPD MPD . 
D 4 HOH A 1 301 82 HOH HOH . 
D 4 HOH A 2 302 33 HOH HOH . 
D 4 HOH A 3 303 22 HOH HOH . 
D 4 HOH A 4 304 90 HOH HOH . 
D 4 HOH A 5 305 89 HOH HOH . 
D 4 HOH A 6 306 40 HOH HOH . 
D 4 HOH A 7 307 11 HOH HOH . 
D 4 HOH A 8 308 25 HOH HOH . 
D 4 HOH A 9 309 43 HOH HOH . 
D 4 HOH A 10 310 67 HOH HOH . 
D 4 HOH A 11 311 20 HOH HOH . 
D 4 HOH A 12 312 79 HOH HOH . 
D 4 HOH A 13 313 41 HOH HOH . 
D 4 HOH A 14 314 24 HOH HOH . 
D 4 HOH A 15 315 13 HOH HOH . 
D 4 HOH A 16 316 45 HOH HOH . 
D 4 HOH A 17 317 34 HOH HOH . 
D 4 HOH A 18 318 3 HOH HOH . 
D 4 HOH A 19 319 86 HOH HOH . 
D 4 HOH A 20 320 52 HOH HOH . 
D 4 HOH A 21 321 7 HOH HOH . 
D 4 HOH A 22 322 28 HOH HOH . 
D 4 HOH A 23 323 44 HOH HOH . 
D 4 HOH A 24 324 35 HOH HOH . 
D 4 HOH A 25 325 4 HOH HOH . 
D 4 HOH A 26 326 60 HOH HOH . 
D 4 HOH A 27 327 68 HOH HOH . 
D 4 HOH A 28 328 53 HOH HOH . 
D 4 HOH A 29 329 31 HOH HOH . 
D 4 HOH A 30 330 30 HOH HOH . 
D 4 HOH A 31 331 2 HOH HOH . 
D 4 HOH A 32 332 14 HOH HOH . 
D 4 HOH A 33 333 23 HOH HOH . 
D 4 HOH A 34 334 36 HOH HOH . 
D 4 HOH A 35 335 63 HOH HOH . 
D 4 HOH A 36 336 84 HOH HOH . 
D 4 HOH A 37 337 37 HOH HOH . 
D 4 HOH A 38 338 32 HOH HOH . 
D 4 HOH A 39 339 74 HOH HOH . 
D 4 HOH A 40 340 55 HOH HOH . 
D 4 HOH A 41 341 17 HOH HOH . 
D 4 HOH A 42 342 6 HOH HOH . 
D 4 HOH A 43 343 5 HOH HOH . 
D 4 HOH A 44 344 12 HOH HOH . 
D 4 HOH A 45 345 16 HOH HOH . 
D 4 HOH A 46 346 58 HOH HOH . 
D 4 HOH A 47 347 8 HOH HOH . 
D 4 HOH A 48 348 27 HOH HOH . 
D 4 HOH A 49 349 51 HOH HOH . 
D 4 HOH A 50 350 49 HOH HOH . 
D 4 HOH A 51 351 75 HOH HOH . 
D 4 HOH A 52 352 65 HOH HOH . 
D 4 HOH A 53 353 19 HOH HOH . 
D 4 HOH A 54 354 56 HOH HOH . 
D 4 HOH A 55 355 1 HOH HOH . 
D 4 HOH A 56 356 26 HOH HOH . 
D 4 HOH A 57 357 48 HOH HOH . 
D 4 HOH A 58 358 15 HOH HOH . 
D 4 HOH A 59 359 21 HOH HOH . 
D 4 HOH A 60 360 18 HOH HOH . 
D 4 HOH A 61 361 64 HOH HOH . 
D 4 HOH A 62 362 9 HOH HOH . 
D 4 HOH A 63 363 50 HOH HOH . 
D 4 HOH A 64 364 54 HOH HOH . 
D 4 HOH A 65 365 66 HOH HOH . 
D 4 HOH A 66 366 91 HOH HOH . 
D 4 HOH A 67 367 10 HOH HOH . 
D 4 HOH A 68 368 39 HOH HOH . 
D 4 HOH A 69 369 76 HOH HOH . 
D 4 HOH A 70 370 62 HOH HOH . 
D 4 HOH A 71 371 29 HOH HOH . 
D 4 HOH A 72 372 47 HOH HOH . 
D 4 HOH A 73 373 69 HOH HOH . 
D 4 HOH A 74 374 88 HOH HOH . 
D 4 HOH A 75 375 38 HOH HOH . 
D 4 HOH A 76 376 57 HOH HOH . 
D 4 HOH A 77 377 81 HOH HOH . 
D 4 HOH A 78 378 61 HOH HOH . 
D 4 HOH A 79 379 71 HOH HOH . 
D 4 HOH A 80 380 73 HOH HOH . 
D 4 HOH A 81 381 85 HOH HOH . 
D 4 HOH A 82 382 87 HOH HOH . 
D 4 HOH A 83 383 59 HOH HOH . 
D 4 HOH A 84 384 72 HOH HOH . 
D 4 HOH A 85 385 78 HOH HOH . 
D 4 HOH A 86 386 92 HOH HOH . 
D 4 HOH A 87 387 77 HOH HOH . 
D 4 HOH A 88 388 70 HOH HOH . 
D 4 HOH A 89 389 80 HOH HOH . 
D 4 HOH A 90 390 83 HOH HOH . 
D 4 HOH A 91 391 46 HOH HOH . 
D 4 HOH A 92 392 42 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MPD . . . C 3 -16.992 20.795 -9.438 1 42.06 ? C1 MPD 202 A 1 
HETATM 2 C C2 MPD . . . C 3 -18.455 20.564 -9.781 1 46.9 ? C2 MPD 202 A 1 
HETATM 3 O O2 MPD . . . C 3 -19.107 19.975 -8.634 1 47.54 ? O2 MPD 202 A 1 
HETATM 4 C CM MPD . . . C 3 -19.135 21.892 -10.085 1 50.49 ? CM MPD 202 A 1 
HETATM 5 C C3 MPD . . . C 3 -18.577 19.63 -10.979 1 51.49 ? C3 MPD 202 A 1 
HETATM 6 C C4 MPD . . . C 3 -17.97 18.255 -10.721 1 52.62 ? C4 MPD 202 A 1 
HETATM 7 O O4 MPD . . . C 3 -18.949 17.253 -10.889 1 48.46 ? O4 MPD 202 A 1 
HETATM 8 C C5 MPD . . . C 3 -16.824 17.983 -11.689 1 57.08 ? C5 MPD 202 A 1 
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_model_server_stats.io_time_ms              60 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           331 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           8 
#