data_7DJ0 # _model_server_result.job_id lY2crrS1xj-E-sljfDM7LA _model_server_result.datetime_utc '2024-10-10 06:30:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7dj0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 7DJ0 # _exptl.entry_id 7DJ0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7DJ0 _cell.length_a 48.015 _cell.length_b 48.015 _cell.length_c 82.752 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7DJ0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 237 n n C1 H11 MPD sing 238 n n C1 H12 MPD sing 239 n n C1 H13 MPD sing 240 n n C2 O2 MPD sing 241 n n C2 CM MPD sing 242 n n C2 C3 MPD sing 243 n n O2 HO2 MPD sing 244 n n CM HM1 MPD sing 245 n n CM HM2 MPD sing 246 n n CM HM3 MPD sing 247 n n C3 C4 MPD sing 248 n n C3 H31 MPD sing 249 n n C3 H32 MPD sing 250 n n C4 O4 MPD sing 251 n n C4 C5 MPD sing 252 n n C4 H4 MPD sing 253 n n O4 HO4 MPD sing 254 n n C5 H51 MPD sing 255 n n C5 H52 MPD sing 256 n n C5 H53 MPD sing 257 n n # _atom_sites.entry_id 7DJ0 _atom_sites.fract_transf_matrix[1][1] 0.020827 _atom_sites.fract_transf_matrix[1][2] 0.012024 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024049 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012084 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MPO A 1 201 201 MPO MPO . C 3 MPD A 1 202 202 MPD MPD . D 4 HOH A 1 301 120 HOH HOH . D 4 HOH A 2 302 76 HOH HOH . D 4 HOH A 3 303 105 HOH HOH . D 4 HOH A 4 304 68 HOH HOH . D 4 HOH A 5 305 64 HOH HOH . D 4 HOH A 6 306 103 HOH HOH . D 4 HOH A 7 307 46 HOH HOH . D 4 HOH A 8 308 107 HOH HOH . D 4 HOH A 9 309 40 HOH HOH . D 4 HOH A 10 310 15 HOH HOH . D 4 HOH A 11 311 86 HOH HOH . D 4 HOH A 12 312 23 HOH HOH . D 4 HOH A 13 313 16 HOH HOH . D 4 HOH A 14 314 77 HOH HOH . D 4 HOH A 15 315 96 HOH HOH . D 4 HOH A 16 316 14 HOH HOH . D 4 HOH A 17 317 81 HOH HOH . D 4 HOH A 18 318 13 HOH HOH . D 4 HOH A 19 319 33 HOH HOH . D 4 HOH A 20 320 75 HOH HOH . D 4 HOH A 21 321 56 HOH HOH . D 4 HOH A 22 322 20 HOH HOH . D 4 HOH A 23 323 55 HOH HOH . D 4 HOH A 24 324 35 HOH HOH . D 4 HOH A 25 325 10 HOH HOH . D 4 HOH A 26 326 30 HOH HOH . D 4 HOH A 27 327 27 HOH HOH . D 4 HOH A 28 328 50 HOH HOH . D 4 HOH A 29 329 18 HOH HOH . D 4 HOH A 30 330 65 HOH HOH . D 4 HOH A 31 331 108 HOH HOH . D 4 HOH A 32 332 109 HOH HOH . D 4 HOH A 33 333 59 HOH HOH . D 4 HOH A 34 334 1 HOH HOH . D 4 HOH A 35 335 90 HOH HOH . D 4 HOH A 36 336 36 HOH HOH . D 4 HOH A 37 337 3 HOH HOH . D 4 HOH A 38 338 44 HOH HOH . D 4 HOH A 39 339 72 HOH HOH . D 4 HOH A 40 340 126 HOH HOH . D 4 HOH A 41 341 7 HOH HOH . D 4 HOH A 42 342 106 HOH HOH . D 4 HOH A 43 343 9 HOH HOH . D 4 HOH A 44 344 6 HOH HOH . D 4 HOH A 45 345 67 HOH HOH . D 4 HOH A 46 346 88 HOH HOH . D 4 HOH A 47 347 48 HOH HOH . D 4 HOH A 48 348 37 HOH HOH . D 4 HOH A 49 349 22 HOH HOH . D 4 HOH A 50 350 89 HOH HOH . D 4 HOH A 51 351 32 HOH HOH . D 4 HOH A 52 352 12 HOH HOH . D 4 HOH A 53 353 8 HOH HOH . D 4 HOH A 54 354 26 HOH HOH . D 4 HOH A 55 355 24 HOH HOH . D 4 HOH A 56 356 70 HOH HOH . D 4 HOH A 57 357 31 HOH HOH . D 4 HOH A 58 358 4 HOH HOH . D 4 HOH A 59 359 74 HOH HOH . D 4 HOH A 60 360 11 HOH HOH . D 4 HOH A 61 361 28 HOH HOH . D 4 HOH A 62 362 66 HOH HOH . D 4 HOH A 63 363 21 HOH HOH . D 4 HOH A 64 364 39 HOH HOH . D 4 HOH A 65 365 29 HOH HOH . D 4 HOH A 66 366 47 HOH HOH . D 4 HOH A 67 367 73 HOH HOH . D 4 HOH A 68 368 19 HOH HOH . D 4 HOH A 69 369 2 HOH HOH . D 4 HOH A 70 370 87 HOH HOH . D 4 HOH A 71 371 104 HOH HOH . D 4 HOH A 72 372 58 HOH HOH . D 4 HOH A 73 373 61 HOH HOH . D 4 HOH A 74 374 25 HOH HOH . D 4 HOH A 75 375 122 HOH HOH . D 4 HOH A 76 376 85 HOH HOH . D 4 HOH A 77 377 63 HOH HOH . D 4 HOH A 78 378 5 HOH HOH . D 4 HOH A 79 379 45 HOH HOH . D 4 HOH A 80 380 43 HOH HOH . D 4 HOH A 81 381 53 HOH HOH . D 4 HOH A 82 382 17 HOH HOH . D 4 HOH A 83 383 100 HOH HOH . D 4 HOH A 84 384 42 HOH HOH . D 4 HOH A 85 385 80 HOH HOH . D 4 HOH A 86 386 117 HOH HOH . D 4 HOH A 87 387 78 HOH HOH . D 4 HOH A 88 388 79 HOH HOH . D 4 HOH A 89 389 60 HOH HOH . D 4 HOH A 90 390 93 HOH HOH . D 4 HOH A 91 391 121 HOH HOH . D 4 HOH A 92 392 113 HOH HOH . D 4 HOH A 93 393 102 HOH HOH . D 4 HOH A 94 394 38 HOH HOH . D 4 HOH A 95 395 115 HOH HOH . D 4 HOH A 96 396 111 HOH HOH . D 4 HOH A 97 397 127 HOH HOH . D 4 HOH A 98 398 91 HOH HOH . D 4 HOH A 99 399 95 HOH HOH . D 4 HOH A 100 400 98 HOH HOH . D 4 HOH A 101 401 123 HOH HOH . D 4 HOH A 102 402 114 HOH HOH . D 4 HOH A 103 403 118 HOH HOH . D 4 HOH A 104 404 116 HOH HOH . D 4 HOH A 105 405 84 HOH HOH . D 4 HOH A 106 406 41 HOH HOH . D 4 HOH A 107 407 83 HOH HOH . D 4 HOH A 108 408 71 HOH HOH . D 4 HOH A 109 409 124 HOH HOH . D 4 HOH A 110 410 97 HOH HOH . D 4 HOH A 111 411 69 HOH HOH . D 4 HOH A 112 412 51 HOH HOH . D 4 HOH A 113 413 62 HOH HOH . D 4 HOH A 114 414 94 HOH HOH . D 4 HOH A 115 415 101 HOH HOH . D 4 HOH A 116 416 119 HOH HOH . D 4 HOH A 117 417 99 HOH HOH . D 4 HOH A 118 418 110 HOH HOH . D 4 HOH A 119 419 54 HOH HOH . D 4 HOH A 120 420 92 HOH HOH . D 4 HOH A 121 421 34 HOH HOH . D 4 HOH A 122 422 82 HOH HOH . D 4 HOH A 123 423 125 HOH HOH . D 4 HOH A 124 424 52 HOH HOH . D 4 HOH A 125 425 49 HOH HOH . D 4 HOH A 126 426 57 HOH HOH . D 4 HOH A 127 427 112 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . C 3 17.044 -21.222 -9.414 1 48.7 ? C1 MPD 202 A 1 HETATM 2 C C2 MPD . . . C 3 18.423 -20.881 -9.967 1 48.37 ? C2 MPD 202 A 1 HETATM 3 O O2 MPD . . . C 3 19.216 -20.306 -8.898 1 47.2 ? O2 MPD 202 A 1 HETATM 4 C CM MPD . . . C 3 19.094 -22.155 -10.459 1 45.09 ? CM MPD 202 A 1 HETATM 5 C C3 MPD . . . C 3 18.348 -19.896 -11.13 1 53.4 ? C3 MPD 202 A 1 HETATM 6 C C4 MPD . . . C 3 18.037 -18.475 -10.686 1 54.88 ? C4 MPD 202 A 1 HETATM 7 O O4 MPD . . . C 3 18.795 -17.542 -11.425 1 54.53 ? O4 MPD 202 A 1 HETATM 8 C C5 MPD . . . C 3 16.567 -18.208 -10.945 1 56.01 ? C5 MPD 202 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 261 _model_server_stats.encode_time_ms 16 _model_server_stats.element_count 8 #