data_7DJ1 # _model_server_result.job_id Q2H2ZpXV3XwDFNa9snyyew _model_server_result.datetime_utc '2024-10-16 12:24:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7dj1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":601}' # _entry.id 7DJ1 # _exptl.entry_id 7DJ1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 131.173 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description LEUCINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.93 _cell.angle_gamma 90 _cell.entry_id 7DJ1 _cell.length_a 81.853 _cell.length_b 94.115 _cell.length_c 94.248 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7DJ1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E 1 1 B,F,G,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLY 20 A GLY 20 1_555 E NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc2 A O ALA 22 A ALA 22 1_555 D NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc3 A O VAL 23 A VAL 23 1_555 E NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? metalc ? metalc4 A OD1 ASN 27 A ASN 27 1_555 D NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc5 A O THR 254 A THR 254 1_555 D NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? metalc ? metalc6 A OG1 THR 254 A THR 254 1_555 D NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? metalc ? metalc7 A OD1 ASN 286 A ASN 286 1_555 D NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.733 ? metalc ? metalc8 A O ALA 351 A ALA 351 1_555 E NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? metalc ? metalc9 A OG1 THR 354 A THR 354 1_555 E NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? metalc ? metalc10 A OG SER 355 A SER 355 1_555 E NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.827 ? metalc ? metalc11 C OXT LEU . A LEU 601 1_555 D NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.602 ? metalc ? metalc12 B O GLY 20 B GLY 20 1_555 H NA NA . B NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc13 B O ALA 22 B ALA 22 1_555 G NA NA . B NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc14 B O VAL 23 B VAL 23 1_555 H NA NA . B NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? metalc ? metalc15 B OD1 ASN 27 B ASN 27 1_555 G NA NA . B NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc16 B O THR 254 B THR 254 1_555 G NA NA . B NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.52 ? metalc ? metalc17 B OG1 THR 254 B THR 254 1_555 G NA NA . B NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? metalc ? metalc18 B OD1 ASN 286 B ASN 286 1_555 G NA NA . B NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? metalc ? metalc19 B O ALA 351 B ALA 351 1_555 H NA NA . B NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? metalc ? metalc20 B OG1 THR 354 B THR 354 1_555 H NA NA . B NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? metalc ? metalc21 B OG SER 355 B SER 355 1_555 H NA NA . B NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.685 ? metalc ? metalc22 F O LEU . B LEU 601 1_555 G NA NA . B NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.662 ? # _chem_comp.formula 'C6 H13 N O2' _chem_comp.formula_weight 131.173 _chem_comp.id LEU _chem_comp.mon_nstd_flag y _chem_comp.name LEUCINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA LEU sing 171 n n N H LEU sing 172 n n N H2 LEU sing 173 n n CA C LEU sing 174 n n CA CB LEU sing 175 n n CA HA LEU sing 176 n n C O LEU doub 177 n n C OXT LEU sing 178 n n CB CG LEU sing 179 n n CB HB2 LEU sing 180 n n CB HB3 LEU sing 181 n n CG CD1 LEU sing 182 n n CG CD2 LEU sing 183 n n CG HG LEU sing 184 n n CD1 HD11 LEU sing 185 n n CD1 HD12 LEU sing 186 n n CD1 HD13 LEU sing 187 n n CD2 HD21 LEU sing 188 n n CD2 HD22 LEU sing 189 n n CD2 HD23 LEU sing 190 n n OXT HXT LEU sing 191 n n # _atom_sites.entry_id 7DJ1 _atom_sites.fract_transf_matrix[1][1] 0.012217 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001269 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010625 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010667 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 LEU A 1 601 601 LEU LEU . D 3 NA A 1 602 701 NA NA . E 3 NA A 1 603 702 NA NA . F 2 LEU B 1 601 601 LEU LEU . G 3 NA B 1 602 701 NA NA . H 3 NA B 1 603 702 NA NA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N LEU . . . F 2 16.868 22.788 6.917 1 71.25 ? N LEU 601 B 1 HETATM 2 C CA LEU . . . F 2 16.721 23.167 8.318 1 71.47 ? CA LEU 601 B 1 HETATM 3 C C LEU . . . F 2 15.813 24.376 8.468 1 70.57 ? C LEU 601 B 1 HETATM 4 O O LEU . . . F 2 15.011 24.686 7.588 1 71.25 ? O LEU 601 B 1 HETATM 5 C CB LEU . . . F 2 18.081 23.466 8.946 1 72.02 ? CB LEU 601 B 1 HETATM 6 C CG LEU . . . F 2 18.986 22.257 9.176 1 74.86 ? CG LEU 601 B 1 HETATM 7 C CD1 LEU . . . F 2 20.315 22.692 9.775 1 75.28 ? CD1 LEU 601 B 1 HETATM 8 C CD2 LEU . . . F 2 18.299 21.222 10.05 1 74.42 ? CD2 LEU 601 B 1 HETATM 9 O OXT LEU . . . F 2 15.886 25.095 9.463 1 70.82 ? OXT LEU 601 B 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 260 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 9 #