data_7DJ2 # _model_server_result.job_id chCxvzwQomwFldgdyR4sKA _model_server_result.datetime_utc '2024-11-24 16:59:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7dj2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":602}' # _entry.id 7DJ2 # _exptl.entry_id 7DJ2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96 _cell.angle_gamma 90 _cell.entry_id 7DJ2 _cell.length_a 82.327 _cell.length_b 110.707 _cell.length_c 87.135 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7DJ2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLY 20 A GLY 20 1_555 D NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? metalc ? metalc2 A O VAL 23 A VAL 23 1_555 D NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc3 A O ALA 351 A ALA 351 1_555 D NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? metalc ? metalc4 A OG1 THR 354 A THR 354 1_555 D NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc5 A OG SER 355 A SER 355 1_555 D NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? metalc ? metalc6 B O GLY 20 B GLY 20 1_555 G NA NA . B NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? metalc ? metalc7 B O VAL 23 B VAL 23 1_555 G NA NA . B NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? metalc ? metalc8 B O ALA 351 B ALA 351 1_555 G NA NA . B NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? metalc ? metalc9 B OG1 THR 354 B THR 354 1_555 G NA NA . B NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc10 B OG SER 355 B SER 355 1_555 G NA NA . B NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7DJ2 _atom_sites.fract_transf_matrix[1][1] 0.012147 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001278 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009033 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01154 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 LEU A 1 601 601 LEU LEU . D 3 NA A 1 602 701 NA NA . E 4 BOG A 1 603 801 BOG BOG . F 2 LEU B 1 601 601 LEU LEU . G 3 NA B 1 602 701 NA NA . H 4 BOG B 1 603 801 BOG BOG . I 5 HOH A 1 701 44 HOH HOH . I 5 HOH A 2 702 153 HOH HOH . I 5 HOH A 3 703 261 HOH HOH . I 5 HOH A 4 704 21 HOH HOH . I 5 HOH A 5 705 7 HOH HOH . I 5 HOH A 6 706 104 HOH HOH . I 5 HOH A 7 707 172 HOH HOH . I 5 HOH A 8 708 63 HOH HOH . I 5 HOH A 9 709 84 HOH HOH . I 5 HOH A 10 710 54 HOH HOH . I 5 HOH A 11 711 209 HOH HOH . I 5 HOH A 12 712 182 HOH HOH . I 5 HOH A 13 713 75 HOH HOH . I 5 HOH A 14 714 132 HOH HOH . I 5 HOH A 15 715 1 HOH HOH . I 5 HOH A 16 716 38 HOH HOH . I 5 HOH A 17 717 124 HOH HOH . I 5 HOH A 18 718 79 HOH HOH . I 5 HOH A 19 719 32 HOH HOH . I 5 HOH A 20 720 57 HOH HOH . I 5 HOH A 21 721 161 HOH HOH . I 5 HOH A 22 722 126 HOH HOH . I 5 HOH A 23 723 47 HOH HOH . I 5 HOH A 24 724 188 HOH HOH . I 5 HOH A 25 725 26 HOH HOH . I 5 HOH A 26 726 46 HOH HOH . I 5 HOH A 27 727 102 HOH HOH . I 5 HOH A 28 728 5 HOH HOH . I 5 HOH A 29 729 231 HOH HOH . I 5 HOH A 30 730 28 HOH HOH . I 5 HOH A 31 731 101 HOH HOH . I 5 HOH A 32 732 15 HOH HOH . I 5 HOH A 33 733 30 HOH HOH . I 5 HOH A 34 734 39 HOH HOH . I 5 HOH A 35 735 114 HOH HOH . I 5 HOH A 36 736 69 HOH HOH . I 5 HOH A 37 737 105 HOH HOH . I 5 HOH A 38 738 13 HOH HOH . I 5 HOH A 39 739 234 HOH HOH . I 5 HOH A 40 740 143 HOH HOH . I 5 HOH A 41 741 113 HOH HOH . I 5 HOH A 42 742 2 HOH HOH . I 5 HOH A 43 743 64 HOH HOH . I 5 HOH A 44 744 112 HOH HOH . I 5 HOH A 45 745 61 HOH HOH . I 5 HOH A 46 746 117 HOH HOH . I 5 HOH A 47 747 81 HOH HOH . I 5 HOH A 48 748 167 HOH HOH . I 5 HOH A 49 749 35 HOH HOH . I 5 HOH A 50 750 19 HOH HOH . I 5 HOH A 51 751 142 HOH HOH . I 5 HOH A 52 752 164 HOH HOH . I 5 HOH A 53 753 51 HOH HOH . I 5 HOH A 54 754 115 HOH HOH . I 5 HOH A 55 755 162 HOH HOH . I 5 HOH A 56 756 10 HOH HOH . I 5 HOH A 57 757 34 HOH HOH . I 5 HOH A 58 758 145 HOH HOH . I 5 HOH A 59 759 144 HOH HOH . I 5 HOH A 60 760 168 HOH HOH . I 5 HOH A 61 761 147 HOH HOH . I 5 HOH A 62 762 95 HOH HOH . I 5 HOH A 63 763 98 HOH HOH . I 5 HOH A 64 764 219 HOH HOH . I 5 HOH A 65 765 185 HOH HOH . I 5 HOH A 66 766 118 HOH HOH . I 5 HOH A 67 767 60 HOH HOH . I 5 HOH A 68 768 250 HOH HOH . I 5 HOH A 69 769 55 HOH HOH . I 5 HOH A 70 770 200 HOH HOH . I 5 HOH A 71 771 237 HOH HOH . I 5 HOH A 72 772 160 HOH HOH . I 5 HOH A 73 773 123 HOH HOH . I 5 HOH A 74 774 78 HOH HOH . I 5 HOH A 75 775 229 HOH HOH . I 5 HOH A 76 776 163 HOH HOH . I 5 HOH A 77 777 125 HOH HOH . I 5 HOH A 78 778 181 HOH HOH . I 5 HOH A 79 779 8 HOH HOH . I 5 HOH A 80 780 177 HOH HOH . I 5 HOH A 81 781 111 HOH HOH . I 5 HOH A 82 782 170 HOH HOH . I 5 HOH A 83 783 214 HOH HOH . I 5 HOH A 84 784 62 HOH HOH . I 5 HOH A 85 785 146 HOH HOH . I 5 HOH A 86 786 217 HOH HOH . I 5 HOH A 87 787 165 HOH HOH . I 5 HOH A 88 788 45 HOH HOH . I 5 HOH A 89 789 116 HOH HOH . I 5 HOH A 90 790 239 HOH HOH . I 5 HOH A 91 791 178 HOH HOH . I 5 HOH A 92 792 59 HOH HOH . I 5 HOH A 93 793 86 HOH HOH . I 5 HOH A 94 794 187 HOH HOH . I 5 HOH A 95 795 183 HOH HOH . I 5 HOH A 96 796 206 HOH HOH . I 5 HOH A 97 797 31 HOH HOH . I 5 HOH A 98 798 121 HOH HOH . I 5 HOH A 99 799 252 HOH HOH . I 5 HOH A 100 800 29 HOH HOH . I 5 HOH A 101 801 198 HOH HOH . I 5 HOH A 102 802 193 HOH HOH . I 5 HOH A 103 803 230 HOH HOH . I 5 HOH A 104 804 180 HOH HOH . I 5 HOH A 105 805 68 HOH HOH . I 5 HOH A 106 806 106 HOH HOH . I 5 HOH A 107 807 197 HOH HOH . I 5 HOH A 108 808 131 HOH HOH . I 5 HOH A 109 809 258 HOH HOH . I 5 HOH A 110 810 195 HOH HOH . I 5 HOH A 111 811 248 HOH HOH . I 5 HOH A 112 812 65 HOH HOH . I 5 HOH A 113 813 82 HOH HOH . I 5 HOH A 114 814 135 HOH HOH . I 5 HOH A 115 815 203 HOH HOH . I 5 HOH A 116 816 244 HOH HOH . I 5 HOH A 117 817 152 HOH HOH . I 5 HOH A 118 818 186 HOH HOH . I 5 HOH A 119 819 259 HOH HOH . I 5 HOH A 120 820 154 HOH HOH . I 5 HOH A 121 821 242 HOH HOH . I 5 HOH A 122 822 150 HOH HOH . I 5 HOH A 123 823 243 HOH HOH . I 5 HOH A 124 824 215 HOH HOH . J 5 HOH B 1 701 254 HOH HOH . J 5 HOH B 2 702 222 HOH HOH . J 5 HOH B 3 703 37 HOH HOH . J 5 HOH B 4 704 18 HOH HOH . J 5 HOH B 5 705 42 HOH HOH . J 5 HOH B 6 706 90 HOH HOH . J 5 HOH B 7 707 260 HOH HOH . J 5 HOH B 8 708 27 HOH HOH . J 5 HOH B 9 709 41 HOH HOH . J 5 HOH B 10 710 14 HOH HOH . J 5 HOH B 11 711 25 HOH HOH . J 5 HOH B 12 712 50 HOH HOH . J 5 HOH B 13 713 40 HOH HOH . J 5 HOH B 14 714 9 HOH HOH . J 5 HOH B 15 715 166 HOH HOH . J 5 HOH B 16 716 148 HOH HOH . J 5 HOH B 17 717 48 HOH HOH . J 5 HOH B 18 718 96 HOH HOH . J 5 HOH B 19 719 77 HOH HOH . J 5 HOH B 20 720 33 HOH HOH . J 5 HOH B 21 721 136 HOH HOH . J 5 HOH B 22 722 23 HOH HOH . J 5 HOH B 23 723 24 HOH HOH . J 5 HOH B 24 724 6 HOH HOH . J 5 HOH B 25 725 103 HOH HOH . J 5 HOH B 26 726 128 HOH HOH . J 5 HOH B 27 727 91 HOH HOH . J 5 HOH B 28 728 171 HOH HOH . J 5 HOH B 29 729 36 HOH HOH . J 5 HOH B 30 730 49 HOH HOH . J 5 HOH B 31 731 134 HOH HOH . J 5 HOH B 32 732 100 HOH HOH . J 5 HOH B 33 733 80 HOH HOH . J 5 HOH B 34 734 228 HOH HOH . J 5 HOH B 35 735 119 HOH HOH . J 5 HOH B 36 736 138 HOH HOH . J 5 HOH B 37 737 224 HOH HOH . J 5 HOH B 38 738 253 HOH HOH . J 5 HOH B 39 739 175 HOH HOH . J 5 HOH B 40 740 3 HOH HOH . J 5 HOH B 41 741 190 HOH HOH . J 5 HOH B 42 742 221 HOH HOH . J 5 HOH B 43 743 88 HOH HOH . J 5 HOH B 44 744 216 HOH HOH . J 5 HOH B 45 745 52 HOH HOH . J 5 HOH B 46 746 22 HOH HOH . J 5 HOH B 47 747 17 HOH HOH . J 5 HOH B 48 748 16 HOH HOH . J 5 HOH B 49 749 20 HOH HOH . J 5 HOH B 50 750 212 HOH HOH . J 5 HOH B 51 751 139 HOH HOH . J 5 HOH B 52 752 233 HOH HOH . J 5 HOH B 53 753 235 HOH HOH . J 5 HOH B 54 754 12 HOH HOH . J 5 HOH B 55 755 207 HOH HOH . J 5 HOH B 56 756 184 HOH HOH . J 5 HOH B 57 757 151 HOH HOH . J 5 HOH B 58 758 87 HOH HOH . J 5 HOH B 59 759 246 HOH HOH . J 5 HOH B 60 760 110 HOH HOH . J 5 HOH B 61 761 76 HOH HOH . J 5 HOH B 62 762 156 HOH HOH . J 5 HOH B 63 763 238 HOH HOH . J 5 HOH B 64 764 251 HOH HOH . J 5 HOH B 65 765 211 HOH HOH . J 5 HOH B 66 766 141 HOH HOH . J 5 HOH B 67 767 223 HOH HOH . J 5 HOH B 68 768 122 HOH HOH . J 5 HOH B 69 769 149 HOH HOH . J 5 HOH B 70 770 179 HOH HOH . J 5 HOH B 71 771 130 HOH HOH . J 5 HOH B 72 772 155 HOH HOH . J 5 HOH B 73 773 256 HOH HOH . J 5 HOH B 74 774 129 HOH HOH . J 5 HOH B 75 775 107 HOH HOH . J 5 HOH B 76 776 227 HOH HOH . J 5 HOH B 77 777 220 HOH HOH . J 5 HOH B 78 778 245 HOH HOH . J 5 HOH B 79 779 232 HOH HOH . J 5 HOH B 80 780 89 HOH HOH . J 5 HOH B 81 781 225 HOH HOH . J 5 HOH B 82 782 66 HOH HOH . J 5 HOH B 83 783 205 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x -2.674 _atom_site.Cartn_y 15.09 _atom_site.Cartn_z -9.93 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 30.14 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 602 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #